>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  389 bits (196), Expect = e-105
 Identities = 223/235 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaaaacatgcccagcaatcgcttggntgcgatgcggncttaggtaggtaaaacatcag 60
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1359 aacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcag 1300

                                                                        
Query: 61   atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgt 120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1299 atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 1240

                                                                        
Query: 121  tgggtcgnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 180
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 1180

                                                                   
Query: 181  ntgngctcctttaccncntaatgaaccagncttcatcgcatcctggttagcatca 235
             || |||||||||||    || ||||||| |||||||||||||||||||||||||
Sbjct: 1179 ctgtgctcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatca 1125

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  351 bits (177), Expect = 6e-94
 Identities = 189/195 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaaaacatgcccagcaatcgcttggntgcgatgcggncttaggtaggtaaaacatcag 60
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 7719 aacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcag 7660

                                                                        
Query: 61   atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgt 120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7659 atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 7600

                                                                        
Query: 121  tgggtcgnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 180
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7599 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 7540

                           
Query: 181  ntgngctcctttacc 195
             || |||||||||||
Sbjct: 7539 ctgtgctcctttacc 7525



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 203  gaaccagncttcatcgcatcctggttagcatca 235
            ||||||| |||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatca 7263

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  309 bits (156), Expect = 2e-81
 Identities = 189/198 (95%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaaaacatgcccagcaatcgcttggntgcgatgcggncttag-gtaggtaaaacatca 59
            ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct: 1668 aacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgtaggtaaaacatca 1609

                                                                        
Query: 60   gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg-tcgncgctccttgcc 118
            |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1608 gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgcc 1549

                                                                        
Query: 119  gttgggtcgnagttcttggcattttggtcggtgcaaccttccggca-cgggcaaagtacc 177
            ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1548 gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggcaaagtacc 1489

                              
Query: 178  ttgntgngctcctttacc 195
            ||| || |||||||||||
Sbjct: 1488 ttgctgtgctcctttacc 1471



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 203  gaaccagncttcatcgcatcctggttagcatca 235
            ||||||| |||||||||||||||||||||||||
Sbjct: 1412 gaaccagtcttcatcgcatcctggttagcatca 1380

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  204 bits (103), Expect = 9e-50
 Identities = 177/201 (88%), Gaps = 7/201 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaaacatgcccagcaatcgcttggntgcgatgcggn-cttaggta-----ggtaaaa 54
           ||||||||||||||||||||||||||| ||||||||||  ||||||||     | |||||
Sbjct: 739 aacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaa 680

                                                                       
Query: 55  catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctcct 114
           ||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 679 catcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcct 621

                                                                       
Query: 115 tgccgttgggtcgnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagt 174
            |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||||||
Sbjct: 620 cgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaaagt 561

                                
Query: 175 accttgntgngctcctttacc 195
           |||||| || || ||||||||
Sbjct: 560 accttgctgtgcccctttacc 540



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 205 accagncttcatcgcatcctggttagcatca 235
           ||||| |||||||||||||||||||||||||
Sbjct: 480 accagtcttcatcgcatcctggttagcatca 450

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  204 bits (103), Expect = 9e-50
 Identities = 177/201 (88%), Gaps = 7/201 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaaaacatgcccagcaatcgcttggntgcgatgcggn-cttaggta-----ggtaaaa 54
            ||||||||||||||||||||||||||| ||||||||||  ||||||||     | |||||
Sbjct: 1589 aacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaa 1530

                                                                        
Query: 55   catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctcct 114
            ||||||||||||||  |||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1529 catcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcct 1471

                                                                        
Query: 115  tgccgttgggtcgnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagt 174
             |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||||||
Sbjct: 1470 cgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaaagt 1411

                                 
Query: 175  accttgntgngctcctttacc 195
            |||||| || || ||||||||
Sbjct: 1410 accttgctgtgcccctttacc 1390



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 205  accagncttcatcgcatcctggttagcatca 235
            ||||| |||||||||||||||||||||||||
Sbjct: 1330 accagtcttcatcgcatcctggttagcatca 1300

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  182 bits (92), Expect = 3e-43
 Identities = 148/169 (87%)
 Strand = Plus / Minus

                                                                        
Query: 67   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtc 126
            |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 127  gnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgntgngc 186
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| || ||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                             
Query: 187  tcctttaccncntaatgaaccagncttcatcgcatcctggttagcatca 235
            |||||||||    || ||||||| |||||| ||||||| ||| ||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatca 1321

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  168 bits (85), Expect = 5e-39
 Identities = 168/195 (86%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 8    catgcccagcaatcgcttggntgcgatgcgg-ncttaggta-----ggtaaaacatcag- 60
            ||||||||||| |||||||  ||||||||||  ||||||||      || ||||||||| 
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 61   atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgt 120
            ||| | |||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 121  tgggtcgnagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 180
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 181  ntgngctcctttacc 195
             || |||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                          
Query: 76     tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
              ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 136    ggcattttggtcggtgcaaccttccggcacgggca 170
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 42.1 bits (21), Expect = 0.76
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                          
Query: 94     gcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttggtcggtgca 153
              ||||||||||||| ||||||| || || |||||| ||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 154    accttccggcacggg 168
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                         
Query: 76    tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
             ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 136   ggcattttggtcggtgcaaccttccggcacgggca 170
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 42.1 bits (21), Expect = 0.76
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                         
Query: 94    gcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttggtcggtgca 153
             ||||||||||||| ||||||| || || |||||| ||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 154   accttccggcacggg 168
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 76       tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
                ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 136      ggcattttggtcggtgcaaccttccggcacgggca 170
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 42.1 bits (21), Expect = 0.76
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 94       gcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttggtcggtgca 153
                ||||||||||||| ||||||| || || |||||| ||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 154      accttccggcacggg 168
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 76       tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
                ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 136      ggcattttggtcggtgcaaccttccggcacgggca 170
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 42.1 bits (21), Expect = 0.76
 Identities = 61/75 (81%)
 Strand = Plus / Plus

                                                                            
Query: 94       gcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttggtcggtgca 153
                ||||||||||||| ||||||| || || |||||| ||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 154      accttccggcacggg 168
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  129 bits (65), Expect = 4e-27
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  117 bits (59), Expect = 2e-23
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                       
Query: 82  aaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcatt 141
           ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 142 ttggtcggtgcaaccttccggcacgggca 170
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  113 bits (57), Expect = 3e-22
 Identities = 86/95 (90%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 76   tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaa-ttctt 1504

                                               
Query: 136  ggcattttggtcggtgcaaccttccggcacgggca 170
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 76  tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
           |||||||||| | |||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 136 ggcattttggtcggtgcaaccttccggcacgggca 170
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                           
Query: 76      tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
               |||||| ||||||||||||||| ||| ||||  |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 136     ggcattttggtcggtgcaaccttccggcacgggca 170
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                         
Query: 76    tgcttaaaaggtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttctt 135
             |||||| ||||||||||||||| ||| ||||  |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 136   ggcattttggtcggtgcaaccttccggcacgggca 170
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86   gtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttgg 145
            ||||| ||||||||||| ||| ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 146  tcggtgcaaccttc 159
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86   gtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttgg 145
            ||||| ||||||||||| ||| ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 146  tcggtgcaaccttc 159
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86   gtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttgg 145
            ||||| ||||||||||| ||| ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 146  tcggtgcaaccttc 159
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 86   gtgtaaaggcagctgccgtcgncgctccttgccgttgggtcgnagttcttggcattttgg 145
            ||||| ||||||||||| ||| ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 146  tcggtgcaaccttc 159
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 203 gaaccagncttcatcgcatcctggttagcatca 235
           ||||||| |||||||||||||||||||||||||
Sbjct: 276 gaaccagtcttcatcgcatcctggttagcatca 244

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 52      aaacatcagatattaaaagtg 72
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 52      aaacatcagatattaaaagtg 72
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     aaacatcagatattaaaagtg 72
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     tcagatattaaaagtggcat 76
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     tcagatattaaaagtggcat 76
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tcagatattaaaagtggcat 76
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tggcatgcttaaaaggtgta 90
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     atcagatattaaaagtggcatgct 79
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,144,353
Number of Sequences: 3902068
Number of extensions: 1144353
Number of successful extensions: 18375
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18279
Number of HSP's gapped (non-prelim): 74
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)