ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106321.1| Zea mays PCO088178 mRNA sequence 335 1e-88
2ref|NM_190383.1| Oryza sativa (japonica cultivar-group), predic... 329 6e-87
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
4dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
5ref|XM_324096.1| Neurospora crassa OR74A predicted protein (NCU0... 46 0.14
6ref|XM_955282.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.14
7emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on ... 46 0.14
8emb|BX897676.1| Neurospora crassa DNA linkage group VI BAC clone... 46 0.14
9gb|AC117229.3| Mus musculus BAC clone RP23-380M1 from chromosome... 44 0.53
10emb|AL928798.20| Mouse DNA sequence from clone RP23-7A19 on chro... 44 0.53
11gb|BC039276.1| Mus musculus pleckstrin homology domain containin... 42 2.1
12gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosom... 42 2.1
13gb|BC016134.1| Mus musculus pleckstrin homology domain containin... 42 2.1
14gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer ... 42 2.1
15gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell... 42 2.1
16gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell... 42 2.1
17gb|AC104333.2| Homo sapiens chromosome 1 clone RP11-348H3, compl... 42 2.1
18dbj|AK154634.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 2.1
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 2.1
20dbj|AK033666.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 42 2.1
21emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chro... 42 2.1
22gb|AF089023.1|AF089023 Euphagus carolinus cytochrome b (cytb) ge... 42 2.1
23gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72... 42 2.1
24emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on ch... 42 2.1
25ref|NM_175175.3| Mus musculus pleckstrin homology domain contain... 42 2.1
26emb|AL928738.8| Mouse DNA sequence from clone RP23-76M15 on chro... 42 2.1
27ref|NM_115487.3| Arabidopsis thaliana unknown protein AT3G56290 ... 40 8.3
28gb|AY665795.1| Cynomys ludovicianus clone A115 microsatellite se... 40 8.3
29gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22... 40 8.3
30gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 8.3
31gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 40 8.3
32ref|XM_601826.2| PREDICTED: Bos taurus similar to type IV alpha ... 40 8.3
33ref|XM_363197.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.3
34gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, compl... 40 8.3
35gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome... 40 8.3
36gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complet... 40 8.3
37ref|XM_820621.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 50... 40 8.3
38gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complet... 40 8.3
39emb|Z99495.1|HS441J1 Human DNA sequence from clone RP3-441J1 on ... 40 8.3
40emb|AL359928.11| Human DNA sequence from clone RP11-80D19 on chr... 40 8.3
41emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chro... 40 8.3
42emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chr... 40 8.3
43gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 8.3
44emb|AL450406.17| Mouse DNA sequence from clone RP23-262J21 on ch... 40 8.3
45gb|BC045562.1| Homo sapiens cDNA clone IMAGE:4815142 40 8.3
46gb|BC040199.1| Homo sapiens cDNA clone IMAGE:4816860 40 8.3
47gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, com... 40 8.3
48gb|AY081675.1| Arabidopsis thaliana putative protein (At3g56290)... 40 8.3
49gb|AC011405.6| Homo sapiens chromosome 5 clone CTB-46B19, comple... 40 8.3
50gb|AC108093.2| Homo sapiens chromosome 5 clone CTD-2541K6, compl... 40 8.3
51gb|AY062503.1| Arabidopsis thaliana putative protein (At3g56290;... 40 8.3
52gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene,... 40 8.3
53dbj|AB197319.1| Uncultured bacterium C23O gene for catechol 2,3-... 40 8.3
54gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 40 8.3
55gb|AC009180.9|AC009180 Homo sapiens chromosome 7 clone RP11-209G... 40 8.3
56dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.3
57gb|AF151527.1|AF151527 Hyphantria cunea serpin gene, complete cds 40 8.3
58gb|AC125520.3| Mus musculus BAC clone RP24-281J17 from 8, comple... 40 8.3
59gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome... 40 8.3
60emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chro... 40 8.3 
>gb|AY106321.1| Zea mays PCO088178 mRNA sequence
          Length = 748

 Score =  335 bits (169), Expect = 1e-88
 Identities = 265/297 (89%)
 Strand = Plus / Minus

                                                                       
Query: 303 tatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaactttg 362
           ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| |  |||
Sbjct: 444 tatcttcctagcttgtcaacctgcctcggctccccccttgtgtccttcttgcagatcttg 385

                                                                       
Query: 363 caggtcttgtccacccaaccttcctccacgtattcgccatcaacttcaacatatgacttg 422
           ||||||||||| |||||||| |||||||||||||  || || ||||||||||||||||||
Sbjct: 384 caggtcttgtcgacccaaccctcctccacgtattgcccgtcgacttcaacatatgacttg 325

                                                                       
Query: 423 aagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatactgttcccttgtc 482
           |||||||||| |||||||||||||||||||| || ||| ||| | ||||| ||||| |||
Sbjct: 324 aagaaatcctggtaggtgccaccaatcttccgcctaagtgctccgtactgctccctcgtc 265

                                                                       
Query: 483 atcctcccttcatctttgatggaatccctggcctcgtacagcagctccgcgtccttctcc 542
           ||||||||| || || || |||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 264 atcctccctccacctctggtggactccctggcctcgtacagcagctcggcgtccttctcc 205

                                                                    
Query: 543 gaccggacctgcgagaagtccagcgcctcggtgatgttcccaaacagggactgcttg 599
           |||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct: 204 gaccggacctgcgagaagtccagcgcctcggtgatgcttccgaagagggactgcttg 148
to top
>ref|NM_190383.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score =  329 bits (166), Expect = 6e-87
 Identities = 265/298 (88%)
 Strand = Plus / Minus

                                                                       
Query: 302 atatcttcctagattgtcaacttgccttggctcccctcttgtgtctttcttgcaaacttt 361
           |||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 447 atatcttcctagcttgtcgacctgcctgggttcccctctagtgtccttcttgcaaacttt 388

                                                                       
Query: 362 gcaggtcttgtccacccaaccttcctccacgtattcgccatcaacttcaacatatgactt 421
           ||||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||
Sbjct: 387 gcaggtcttatccacccaaccttcctctacgtattccccgtcaacatccacatatgactt 328

                                                                       
Query: 422 gaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatactgttcccttgt 481
           |||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||
Sbjct: 327 gaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatactgctcctttgt 268

                                                                       
Query: 482 catcctcccttcatctttgatggaatccctggcctcgtacagcagctccgcgtccttctc 541
           |||||| ||| |||| ||  |||  || ||||| || ||||| |||||||||||||||||
Sbjct: 267 catccttcctccatcctttgtggcctctctggcttcatacagaagctccgcgtccttctc 208

                                                                     
Query: 542 cgaccggacctgcgagaagtccagcgcctcggtgatgttcccaaacagggactgcttg 599
           ||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||
Sbjct: 207 cgaccggacctgcgagaagtccagcgcctcggtgatgctcccgaacaatgactgcttg 150
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 5e-26
 Identities = 160/192 (83%)
 Strand = Plus / Minus

                                                                            
Query: 216      tttgatggtacaaaagaagttcatctgccgaagagtttggaaaagaagtttgttggtttc 275
                |||||| ||||||  |||||||||||| |||| | |||||  |||| ||| || ||||| 
Sbjct: 35169590 tttgattgtacaattgaagttcatctggcgaacaatttggcgaagatgttggtcggtttt 35169531

                                                                            
Query: 276      gagttctctgcgcacgccacatgcatatatcttcctagattgtcaacttgccttggctcc 335
                | ||||||   ||| || |||||   |||||||||||| ||||| || ||||| || |||
Sbjct: 35169530 gggttctccaagcatgcgacatgtgcatatcttcctagcttgtcgacctgcctgggttcc 35169471

                                                                            
Query: 336      cctcttgtgtctttcttgcaaactttgcaggtcttgtccacccaaccttcctccacgtat 395
                ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 35169470 cctctagtgtccttcttgcaaactttgcaggtcttatccacccaaccttcctctacgtat 35169411

                            
Query: 396      tcgccatcaact 407
                || || ||||||
Sbjct: 35169410 tccccgtcaact 35169399



 Score =  123 bits (62), Expect = 7e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                            
Query: 510      ctggcctcgtacagcagctccgcgtccttctccgaccggacctgcgagaagtccagcgcc 569
                ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35169049 ctggcttcatacagaagctccgcgtccttctccgaccggacctgcgagaagtccagcgcc 35168990

                                              
Query: 570      tcggtgatgttcccaaacagggactgcttg 599
                ||||||||| |||| ||||  |||||||||
Sbjct: 35168989 tcggtgatgctcccgaacaatgactgcttg 35168960



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                            
Query: 411      acatatgacttgaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatac 470
                ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 35169282 acatatgacttgaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatac 35169223

                 
Query: 471      t 471
                |
Sbjct: 35169222 t 35169222
to top
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score =  127 bits (64), Expect = 5e-26
 Identities = 160/192 (83%)
 Strand = Plus / Minus

                                                                         
Query: 216   tttgatggtacaaaagaagttcatctgccgaagagtttggaaaagaagtttgttggtttc 275
             |||||| ||||||  |||||||||||| |||| | |||||  |||| ||| || ||||| 
Sbjct: 48674 tttgattgtacaattgaagttcatctggcgaacaatttggcgaagatgttggtcggtttt 48615

                                                                         
Query: 276   gagttctctgcgcacgccacatgcatatatcttcctagattgtcaacttgccttggctcc 335
             | ||||||   ||| || |||||   |||||||||||| ||||| || ||||| || |||
Sbjct: 48614 gggttctccaagcatgcgacatgtgcatatcttcctagcttgtcgacctgcctgggttcc 48555

                                                                         
Query: 336   cctcttgtgtctttcttgcaaactttgcaggtcttgtccacccaaccttcctccacgtat 395
             ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 48554 cctctagtgtccttcttgcaaactttgcaggtcttatccacccaaccttcctctacgtat 48495

                         
Query: 396   tcgccatcaact 407
             || || ||||||
Sbjct: 48494 tccccgtcaact 48483



 Score =  123 bits (62), Expect = 7e-25
 Identities = 83/90 (92%)
 Strand = Plus / Minus

                                                                         
Query: 510   ctggcctcgtacagcagctccgcgtccttctccgaccggacctgcgagaagtccagcgcc 569
             ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48133 ctggcttcatacagaagctccgcgtccttctccgaccggacctgcgagaagtccagcgcc 48074

                                           
Query: 570   tcggtgatgttcccaaacagggactgcttg 599
             ||||||||| |||| ||||  |||||||||
Sbjct: 48073 tcggtgatgctcccgaacaatgactgcttg 48044



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                         
Query: 411   acatatgacttgaagaaatccttgtaggtgccaccaatcttcctccgaagcgctgcatac 470
             ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 48366 acatatgacttgaagaaatccttgtaggtgccaccgatcttcctccgaagtgctccatac 48307

              
Query: 471   t 471
             |
Sbjct: 48306 t 48306
to top
>ref|XM_324096.1| Neurospora crassa OR74A predicted protein (NCU04740.1) partial mRNA
          Length = 1305

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 240 ctgccgaagagtttggaaaagaagtttgttg 270
           |||||||||||| ||||| ||||||||||||
Sbjct: 706 ctgccgaagagtatggaagagaagtttgttg 736
to top
>ref|XM_955282.1| Neurospora crassa OR74A hypothetical protein (NCU04740.1) partial
           mRNA
          Length = 1305

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 240 ctgccgaagagtttggaaaagaagtttgttg 270
           |||||||||||| ||||| ||||||||||||
Sbjct: 706 ctgccgaagagtatggaagagaagtttgttg 736
to top
>emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on chromosome 1q24-25 Contains
             part of the TNR gene fortenascin R (restrictin, janusin),
             complete sequence
          Length = 134539

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 115   ctcatcaaaaaatatttcacatg 137
             |||||||||||||||||||||||
Sbjct: 78503 ctcatcaaaaaatatttcacatg 78481
to top
>emb|BX897676.1| Neurospora crassa DNA linkage group VI BAC clone B8I24
          Length = 83591

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 240   ctgccgaagagtttggaaaagaagtttgttg 270
             |||||||||||| ||||| ||||||||||||
Sbjct: 73296 ctgccgaagagtatggaagagaagtttgttg 73326
to top
>gb|AC117229.3| Mus musculus BAC clone RP23-380M1 from chromosome 2, complete sequence
          Length = 187221

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 254    ggaaaagaagtttgttggtttc 275
              ||||||||||||||||||||||
Sbjct: 101998 ggaaaagaagtttgttggtttc 102019
to top
>emb|AL928798.20| Mouse DNA sequence from clone RP23-7A19 on chromosome 2, complete
             sequence
          Length = 192734

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 254   ggaaaagaagtttgttggtttc 275
             ||||||||||||||||||||||
Sbjct: 23543 ggaaaagaagtttgttggtttc 23522
to top
>gb|BC039276.1| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2, mRNA (cDNA clone MGC:36376
           IMAGE:4987735), complete cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 cccttcatctttgatggaatc 508
           |||||||||||||||||||||
Sbjct: 474 cccttcatctttgatggaatc 454
to top
>gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosome 14, complete
             sequence
          Length = 191219

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   cccttcatctttgatggaatc 508
             |||||||||||||||||||||
Sbjct: 90782 cccttcatctttgatggaatc 90762
to top
>gb|BC016134.1| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2, mRNA (cDNA clone MGC:28979
           IMAGE:4503757), complete cds
          Length = 2897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 cccttcatctttgatggaatc 508
           |||||||||||||||||||||
Sbjct: 464 cccttcatctttgatggaatc 444
to top
>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147520

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     tctgctcatgtgctacttgat 92
              |||||||||||||||||||||
Sbjct: 131919 tctgctcatgtgctacttgat 131899
to top
>gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178965

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    ctcatcaaaaaatatttcaca 135
              |||||||||||||||||||||
Sbjct: 147922 ctcatcaaaaaatatttcaca 147942
to top
>gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194790

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ctcatcaaaaaatatttcaca 135
              |||||||||||||||||||||
Sbjct: 171988 ctcatcaaaaaatatttcaca 171968
to top
>gb|AC104333.2| Homo sapiens chromosome 1 clone RP11-348H3, complete sequence
          Length = 162984

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    tggaatgtgcatatatgctca 118
             |||||||||||||||||||||
Sbjct: 48523 tggaatgtgcatatatgctca 48503
to top
>dbj|AK154634.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630101M03
           product:pleckstrin homology domain containing, family F
           (with FYVE domain) member 2, full insert sequence
          Length = 1964

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 cccttcatctttgatggaatc 508
           |||||||||||||||||||||
Sbjct: 514 cccttcatctttgatggaatc 494
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 553     gcgagaagtccagcgcctcgg 573
               |||||||||||||||||||||
Sbjct: 1358714 gcgagaagtccagcgcctcgg 1358734
to top
>dbj|AK033666.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
           library, clone:9130213H04 product:CDNA FLJ13187 FIS,
           CLONE NT2RP3004242, WEAKLY SIMILAR TO PUTATIVE RHO/RAC
           GUANINE NUCLEOTIDE EXCHANGE FACTOR (HYPOTHETICAL 27.8
           KDA PROTEIN) homolog [Homo sapiens], full insert
           sequence
          Length = 2228

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 cccttcatctttgatggaatc 508
           |||||||||||||||||||||
Sbjct: 517 cccttcatctttgatggaatc 497
to top
>emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chromosome 1, complete
            sequence
          Length = 173609

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 98   tggaatgtgcatatatgctca 118
            |||||||||||||||||||||
Sbjct: 7233 tggaatgtgcatatatgctca 7253
to top
>gb|AF089023.1|AF089023 Euphagus carolinus cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 888

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 368 cttgtccacccaaccttcctccacg 392
           |||||||||| ||||||||||||||
Sbjct: 463 cttgtccacctaaccttcctccacg 487
to top
>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete
              sequence
          Length = 301136

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ctcatcaaaaaatatttcaca 135
              |||||||||||||||||||||
Sbjct: 221280 ctcatcaaaaaatatttcaca 221260
to top
>emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on chromosome 4, complete
             sequence
          Length = 208663

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 488   cccttcatctttgatggaatc 508
             |||||||||||||||||||||
Sbjct: 86004 cccttcatctttgatggaatc 86024
to top
>ref|NM_175175.3| Mus musculus pleckstrin homology domain containing, family F (with
           FYVE domain) member 2 (Plekhf2), mRNA
          Length = 2897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 cccttcatctttgatggaatc 508
           |||||||||||||||||||||
Sbjct: 464 cccttcatctttgatggaatc 444
to top
>emb|AL928738.8| Mouse DNA sequence from clone RP23-76M15 on chromosome 4, complete
             sequence
          Length = 188568

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 476   ccttgtcatcctcccttcatctttg 500
             ||||||||||||| |||||||||||
Sbjct: 63456 ccttgtcatcctctcttcatctttg 63432
to top
>ref|NM_115487.3| Arabidopsis thaliana unknown protein AT3G56290 mRNA, complete cds
          Length = 753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 369 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 412
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 416 ttgtccacccatccctcctccacatattgcccatccacttcaac 373
to top
>gb|AY665795.1| Cynomys ludovicianus clone A115 microsatellite sequence
          Length = 690

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 580 tcccaaacagggactgcttg 599
           ||||||||||||||||||||
Sbjct: 605 tcccaaacagggactgcttg 624
to top
>gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22, complete sequence
          Length = 125108

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   cacccaaccttcctccacgt 393
             ||||||||||||||||||||
Sbjct: 17040 cacccaaccttcctccacgt 17021
to top
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     aaaagaagtttgttggtttc 275
               ||||||||||||||||||||
Sbjct: 1065995 aaaagaagtttgttggtttc 1065976
to top
>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
          Length = 127380

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    aaaagaagtttgttggtttc 275
              ||||||||||||||||||||
Sbjct: 107996 aaaagaagtttgttggtttc 107977
to top
>ref|XM_601826.2| PREDICTED: Bos taurus similar to type IV alpha 6 collagen isoform A
            precursor (LOC523526), mRNA
          Length = 4990

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  ttgatggaatccctggcctc 517
            ||||||||||||||||||||
Sbjct: 4046 ttgatggaatccctggcctc 4065
to top
>ref|XM_363197.1| Magnaporthe grisea 70-15 hypothetical protein (MG08781.4) partial
           cds
          Length = 567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 cctggcctcgtacagcagct 528
           ||||||||||||||||||||
Sbjct: 204 cctggcctcgtacagcagct 223
to top
>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  aacttcaacatatgacttga 423
            ||||||||||||||||||||
Sbjct: 7563 aacttcaacatatgacttga 7582
to top
>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence
          Length = 218807

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    aaaagaagtttgttggtttc 275
              ||||||||||||||||||||
Sbjct: 101170 aaaagaagtttgttggtttc 101151
to top
>gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complete sequence
          Length = 158663

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   cacccaaccttcctccacgt 393
             ||||||||||||||||||||
Sbjct: 51969 cacccaaccttcctccacgt 51950
to top
>ref|XM_820621.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 50S ribosomal protein
           L2 (Tb927.5.3360) partial mRNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 aaaagaagtttgttggtttc 275
           ||||||||||||||||||||
Sbjct: 596 aaaagaagtttgttggtttc 615
to top
>gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complete sequence
          Length = 96556

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tcccctcttgtgtctttctt 352
             ||||||||||||||||||||
Sbjct: 25599 tcccctcttgtgtctttctt 25618
to top
>emb|Z99495.1|HS441J1 Human DNA sequence from clone RP3-441J1 on chromosome 6p24 Contains the
             5' end of gene KIAA1733, complete sequence
          Length = 151213

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aaatatttcacatggacaac 143
             ||||||||||||||||||||
Sbjct: 74256 aaatatttcacatggacaac 74237
to top
>emb|AL359928.11| Human DNA sequence from clone RP11-80D19 on chromosome 1, complete
             sequence
          Length = 63855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 301   tatatcttcctagattgtcaactt 324
             |||||||||||| |||||||||||
Sbjct: 11370 tatatcttcctaaattgtcaactt 11393
to top
>emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chromosome 6 Contains a
             putative novel gene, complete sequence
          Length = 72139

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gttcatctagttctctccta 62
             ||||||||||||||||||||
Sbjct: 29408 gttcatctagttctctccta 29389
to top
>emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chromosome 13, complete
             sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aatatttcacatggacaacacatt 148
             ||||||||||||||| ||||||||
Sbjct: 12197 aatatttcacatggataacacatt 12174
to top
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 204     aacaacatcgggtttgatggtaca 227
               |||||||||||| |||||||||||
Sbjct: 2540373 aacaacatcgggattgatggtaca 2540396
to top
>emb|AL450406.17| Mouse DNA sequence from clone RP23-262J21 on chromosome 13 Contains two
              serine (or cysteine) proteinase inhibitor clade B (Serpinb)
              pseudogenes, a G protein-coupled receptor family C (Gprc)
              pseudogene, a vomeronasal 2 receptor (V2r) or Gprc group 2
              member A related sequence (Gprc2a-rs) pseudogene, two genes
              for novel Serpinb members, the Serpinb6 gene for serine (or
              cysteine) proteinase inhibitor clade B member 6 and a CpG
              island, complete sequence
          Length = 213270

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    aatatttcacatggacaaca 144
              ||||||||||||||||||||
Sbjct: 120369 aatatttcacatggacaaca 120350
to top
>gb|BC045562.1| Homo sapiens cDNA clone IMAGE:4815142
          Length = 3092

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  cacccaaccttcctccacgt 393
            ||||||||||||||||||||
Sbjct: 1874 cacccaaccttcctccacgt 1855
to top
>gb|BC040199.1| Homo sapiens cDNA clone IMAGE:4816860
          Length = 3212

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  cacccaaccttcctccacgt 393
            ||||||||||||||||||||
Sbjct: 1991 cacccaaccttcctccacgt 1972
to top
>gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, complete sequence
          Length = 167547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tttcttgcaaactttgcagg 366
             ||||||||||||||||||||
Sbjct: 18565 tttcttgcaaactttgcagg 18546
to top
>gb|AY081675.1| Arabidopsis thaliana putative protein (At3g56290) mRNA, complete
           cds
          Length = 655

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 369 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 412
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 389 ttgtccacccatccctcctccacatattgcccatccacttcaac 346
to top
>gb|AC011405.6| Homo sapiens chromosome 5 clone CTB-46B19, complete sequence
          Length = 184541

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    atatatgctcatcaaaaaatattt 131
              |||||||||||||| |||||||||
Sbjct: 136833 atatatgctcatcataaaatattt 136810
to top
>gb|AC108093.2| Homo sapiens chromosome 5 clone CTD-2541K6, complete sequence
          Length = 71915

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 98    tggaatgtgcatatatgctcatcaaaaa 125
             |||||| |||||| ||||||||||||||
Sbjct: 24685 tggaatatgcatacatgctcatcaaaaa 24712
to top
>gb|AY062503.1| Arabidopsis thaliana putative protein (At3g56290; F18O21_250) mRNA,
           complete cds
          Length = 744

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 369 ttgtccacccaaccttcctccacgtattcgccatcaacttcaac 412
           ||||||||||| || |||||||| ||||  ||||| ||||||||
Sbjct: 416 ttgtccacccatccctcctccacatattgcccatccacttcaac 373
to top
>gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene, complete cds,
              alternatively spliced
          Length = 379048

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tttcttgcaaactttgcagg 366
              ||||||||||||||||||||
Sbjct: 364908 tttcttgcaaactttgcagg 364927
to top
>dbj|AB197319.1| Uncultured bacterium C23O gene for catechol 2,3-dioxygenase,
           partial cds, clone: R2-375-103b
          Length = 375

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 557 gaagtccagcgcctcggtga 576
           ||||||||||||||||||||
Sbjct: 94  gaagtccagcgcctcggtga 75
to top
>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    aaatatttcacatggacaac 143
              ||||||||||||||||||||
Sbjct: 150354 aaatatttcacatggacaac 150373
to top
>gb|AC009180.9|AC009180 Homo sapiens chromosome 7 clone RP11-209G24, complete sequence
          Length = 163384

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   tcatgtgctacttgatatat 96
            ||||||||||||||||||||
Sbjct: 9321 tcatgtgctacttgatatat 9302
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 560     gtccagcgcctcggtgatgt 579
               ||||||||||||||||||||
Sbjct: 6749816 gtccagcgcctcggtgatgt 6749797
to top
>gb|AF151527.1|AF151527 Hyphantria cunea serpin gene, complete cds
          Length = 18665

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 300  atatatcttcctagattgtcaact 323
            ||||||||| ||||||||||||||
Sbjct: 7250 atatatcttgctagattgtcaact 7227
to top
>gb|AC125520.3| Mus musculus BAC clone RP24-281J17 from 8, complete sequence
          Length = 178227

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    atctttgatggaatccctgg 513
              ||||||||||||||||||||
Sbjct: 119255 atctttgatggaatccctgg 119236
to top
>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence
          Length = 234110

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aatatttcacatggacaaca 144
              ||||||||||||||||||||
Sbjct: 151616 aatatttcacatggacaaca 151635
to top
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete
             sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   atcctcccttcatctttgat 502
             ||||||||||||||||||||
Sbjct: 28895 atcctcccttcatctttgat 28876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,807,955
Number of Sequences: 3902068
Number of extensions: 5807955
Number of successful extensions: 111290
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111064
Number of HSP's gapped (non-prelim): 224
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top