ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30i13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY... 44 5e-04
2GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-ga... 34 0.36
3GON4L_RAT (Q535K8) GON-4-like protein (Protein GON4) (GON-4 homo... 32 1.4
4CNTN5_CHICK (Q90W79) Contactin-5 precursor (F11 axonin-1-related... 32 1.8
5SIRT2_HUMAN (Q8IXJ6) NAD-dependent deacetylase sirtuin-2 (EC 3.5... 31 2.3
6SIRT2_RAT (Q924Y7) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1... 31 2.3
7SIRT2_PONPY (Q5RBF1) NAD-dependent deacetylase sirtuin-2 (EC 3.5... 31 2.3
8V014_FOWPV (Q9J5I7) Putative ankyrin repeat protein FPV014 30 6.8

>WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY DNA-binding|
           protein 20)
          Length = 557

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
 Frame = -3

Query: 586 ETDTVSLDLGVGIS---PNHSDATNQMQSSGPDQMQYQMQTMGSMYGNMRHPSSMAAPAV 416
           ETDT+SL+LGVGIS   PNH+   +Q Q+    Q+  Q    G  +    H S M++   
Sbjct: 458 ETDTISLNLGVGISSDGPNHASNEHQHQN---QQLVNQTHPNGVNF-RFVHASPMSSYYA 513

Query: 415 QGNSAGRMYGSREEKGNEGFTFRATPMDHSANLCYSSAGNLVMGP 281
             NS    YG RE K NE      + +++S+     + G +  GP
Sbjct: 514 SLNSGMNQYGQRETK-NETQNGDISSLNNSSYPYPPNMGRVQSGP 557



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>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel|
           3.1) (AtGLR2)
          Length = 921

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
 Frame = +3

Query: 177 TQLRILL---KRLSLQSIVGNI*FMEL*AFADTLIPSHGPMTKFPA-LL*HRLAEWSIGV 344
           ++LRIL+   KR    SI+G + FME       ++   GP T   A +L H   E ++  
Sbjct: 67  SKLRILMNDAKRSGFLSIMGALQFMET-----DVVAIIGPQTSIMAHVLSHLANELTV-- 119

Query: 345 ALKVNPSLPFSSLEPYMRPAEFPCTAGAAIDDGCLMLPYIEPMVCI*YCIWS 500
                P L F++L+P + P +FP     A  D  LM    E    I Y  WS
Sbjct: 120 -----PMLSFTALDPTLSPLQFPFFVQTAPSDLFLMRAIAE---MITYYGWS 163



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>GON4L_RAT (Q535K8) GON-4-like protein (Protein GON4) (GON-4 homolog)|
          Length = 2256

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 394  CGQQSFLVPLALPLMMDVSCCRTSNPW 474
            CG+ SF  P ALP M   S  RTS PW
Sbjct: 1069 CGEDSFESPAALPAMPSGSEARTSFPW 1095



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>CNTN5_CHICK (Q90W79) Contactin-5 precursor (F11 axonin-1-related protein 2)|
           (FAR-2)
          Length = 1027

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -3

Query: 523 NQMQSSGPDQMQYQMQTMGSMYGNMRHPSSMAAPAVQGNSAGRMYGSREEKGNEGFTFRA 344
           N+M+ SG    QYQ  T  +M+G++    ++   A  GN +GR   +   +  +G     
Sbjct: 90  NEMKDSG----QYQCLTT-NMFGSILSREAVLQFAYLGNFSGRTRSAVSVREGQGVVLMC 144

Query: 343 TPMDHSANLCYS 308
           +P  HS  + YS
Sbjct: 145 SPPLHSPEIIYS 156



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>SIRT2_HUMAN (Q8IXJ6) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-)|
           (SIR2-like) (SIR2-like protein 2)
          Length = 389

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 182 IENLAEEIVITKHCW*YMIHGAMSICRHSHSLSWTHDQVPSTAIA*VS*MVHRCGSESKP 361
           I  L +E ++  H   Y  H   + CRH + LSW  +++ S     V+     C S  KP
Sbjct: 175 IAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSE----VTPKCEDCQSLVKP 230

Query: 362 FVTF 373
            + F
Sbjct: 231 DIVF 234



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>SIRT2_RAT (Q924Y7) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-)|
           (SIR2-like protein 2)
          Length = 352

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 182 IENLAEEIVITKHCW*YMIHGAMSICRHSHSLSWTHDQVPSTAIA*VS*MVHRCGSESKP 361
           I  L +E ++  H   Y  H   + CRH + LSW  +++ S     V+     C S  KP
Sbjct: 138 IAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSE----VTPKCEDCQSLVKP 193

Query: 362 FVTF 373
            + F
Sbjct: 194 DIVF 197



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>SIRT2_PONPY (Q5RBF1) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-)|
          Length = 352

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 182 IENLAEEIVITKHCW*YMIHGAMSICRHSHSLSWTHDQVPSTAIA*VS*MVHRCGSESKP 361
           I  L +E ++  H   Y  H   + CRH + LSW  +++ S     V+     C S  KP
Sbjct: 138 IAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSE----VTPKCEDCQSLVKP 193

Query: 362 FVTF 373
            + F
Sbjct: 194 DIVF 197



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>V014_FOWPV (Q9J5I7) Putative ankyrin repeat protein FPV014|
          Length = 437

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 214 CNDNLFSKILNCVSVTSQFSRRQVC*YKLYLG 119
           C+DN  +K LNC+S    F  RQ+  Y +  G
Sbjct: 351 CDDNAIAKCLNCISCEGFFIYRQLIEYTIERG 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,760,359
Number of Sequences: 219361
Number of extensions: 1730085
Number of successful extensions: 3815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3814
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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