ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-ass... 31 1.0
2LANC2_MOUSE (Q9JJK2) LanC-like protein 2 (Testis-specific adriam... 28 5.0
3EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA re... 28 6.5

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (Peripheral benzodiazepine
           receptor-interacting protein) (PBR-IP) (RIM-binding
           protein 1) (RIM-BP1)
          Length = 1857

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +2

Query: 41  GPLHVVMHSLQHSRSSTIVLLMHMAV*CRDRVVPSDLLYHRADA 172
           GPLH+ + +L  SR S+  L   +AV  R  VVPS L  HR  A
Sbjct: 853 GPLHISVQALT-SRGSSDPLRCCLAVGARAGVVPSQLRVHRLTA 895



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>LANC2_MOUSE (Q9JJK2) LanC-like protein 2 (Testis-specific adriamycin|
           sensitivity protein)
          Length = 450

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +2

Query: 41  GPLHV---VMHSLQHSRSS----TIVLLMHMAV*CRDRVVPSDLLYHRA 166
           GPL V   + H L+    S    T +L MH  + C++  +P +LLY RA
Sbjct: 153 GPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYGRA 201



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>EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)|
           (LPA-2)
          Length = 351

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 22  LKRQFKRTLTCSYAQLTTFKIVHYCTTNAHGG 117
           ++R F+R L C+  + +T + VHY T++A GG
Sbjct: 302 MRRTFRRLLCCACLRQSTRESVHY-TSSAQGG 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,070,170
Number of Sequences: 219361
Number of extensions: 436606
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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