>LDLR_RAT (P35952) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 879

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 543 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVY 388
           N  +  S LS    Y      GTS  +D+     +  P G L  DW+HG +Y
Sbjct: 439 NNRIYWSDLSQRKIYSAVMDQGTSLSYDAIISGDLHAPDG-LAVDWIHGNIY 489

>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169|
          Length = 263

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 490 LHVVGRVAGELAADEVQVTAAGPVVVEVDE 579
           L+ VGR  GE+  DE+++   G V+VEV E
Sbjct: 170 LNRVGRDFGEMGRDEIEMLIKGKVLVEVPE 199

>METE_VIBPA (Q87NA1) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 760

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 543 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVYLGRETTDG 364
           N + I  + S D T++V W      I ++        PV + P  +L    YLG+E  +G
Sbjct: 123 NYHYIVPEFSKDDTFEVSWPQLFEEINEAVQAGHKVKPVLLGPVSYL----YLGKEVEEG 178

Query: 363 FD 358
           FD
Sbjct: 179 FD 180

>TRXR2_HUMAN (Q9NNW7) Thioredoxin reductase 2, mitochondrial precursor (EC|
           1.8.1.9) (TR3) (TR-beta) (Selenoprotein Z) (SelZ)
          Length = 524

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 486 TNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVYLGRETTDGFDCHLW 346
           ++GT ++   A  R  RLP G L   W       G+E T  FD  LW
Sbjct: 270 SHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTT--GKEDTGTFDTVLW 314

>LAMB_ECOLI (P02943) Maltoporin precursor (Maltose-inducible porin) (Lambda|
           receptor protein)
          Length = 446

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = +2

Query: 326 QTKSTLVQRWQSKPSVVSRPR*T-----APWSQSGGRTPTGN 436
           Q K TL Q+WQ+  S+ SRP        A W +  G   TGN
Sbjct: 367 QYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGN 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,454,802
Number of Sequences: 219361
Number of extensions: 1067197
Number of successful extensions: 3281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3281
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)