ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30g21 |
|---|---|
| Clone Library Name | barley_pub |
>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1| Length = 149 Score = 61.6 bits (148), Expect = 2e-09 Identities = 26/52 (50%), Positives = 39/52 (75%) Frame = -1 Query: 588 LSKTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVA 433 LS+ A E I++EAY+ LRDR P P QV+++L G+FAFIL+D+ + + F+A Sbjct: 97 LSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 46.2 bits (108), Expect = 7e-05 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Frame = -1 Query: 582 KTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFF 403 +T ++ +++ Y+ ++GP + + DL G FAF LYD+ + + D G IP + Sbjct: 94 QTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLY 146 Query: 402 WGVDSEDHLVFSDDNELLKAGCGNSFAPFPKGCF-YTTSGGLQSFEH 265 G D L + + + L C + FP G + ++ G ++S+ H Sbjct: 147 MGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGEIRSYYH 192
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = -1 Query: 492 LSGRFAFILYDTVSKSTFVAADADG--SIPFFWGVDSEDHLVFSDDNELLKAGCGNSFAP 319 L G F+F+L DT S VA DA G S+ WG+D + S + + L C F Sbjct: 116 LDGIFSFVLLDTRDNSFMVARDAIGVTSLYIGWGLDGS--VWISSEMKGLNDDC-EHFET 172 Query: 318 FPKGCFYTTS-GGLQSFEHP 262 FP G FY++ GG + + +P Sbjct: 173 FPPGHFYSSKLGGFKQWYNP 192
>ASNH_MYCTU (P64247) Putative asparagine synthetase [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 652 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -1 Query: 510 SQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDNELL 349 ++V++ L G FAF L+DTV++ F A D G P F + V S+ LL Sbjct: 128 TEVLQRLRGMFAFALWDTVTRELFCARDPFGIKPLFIATGAGGTAVASEKKCLL 181
>ASNH_MYCBO (P64248) Putative asparagine synthetase [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 652 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -1 Query: 510 SQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDNELL 349 ++V++ L G FAF L+DTV++ F A D G P F + V S+ LL Sbjct: 128 TEVLQRLRGMFAFALWDTVTRELFCARDPFGIKPLFIATGAGGTAVASEKKCLL 181
>ASNS_MESAU (P17714) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 34.7 bits (78), Expect = 0.21 Identities = 25/76 (32%), Positives = 35/76 (46%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDN 358 L D+G + Q + L G FAFIL DT +K F+ D G P F + + L + Sbjct: 103 LYDKGGI--EQTICMLDGVFAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEA 160 Query: 357 ELLKAGCGNSFAPFPK 310 + L +S PF K Sbjct: 161 KGL-VSLKHSTTPFLK 175
>ASNS_CRIGR (P19891) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 34.7 bits (78), Expect = 0.21 Identities = 25/76 (32%), Positives = 35/76 (46%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDN 358 L D+G + Q + L G FAFIL DT +K F+ D G P F + + L + Sbjct: 103 LYDKGGI--EQTICMLDGVFAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEA 160 Query: 357 ELLKAGCGNSFAPFPK 310 + L +S PF K Sbjct: 161 KGL-VSLKHSTTPFLK 175
>ASNS_PONPY (Q5R6W9) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 33.5 bits (75), Expect = 0.47 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHL 376 L D+G + Q + L G FAF+L DT +K F+ D G P F + + L Sbjct: 103 LYDKGGI--EQTICMLDGVFAFVLLDTATKKVFLGRDTYGVRPLFKAMTEDGFL 154
>ASNS_HUMAN (P08243) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) (Cell cycle control protein TS11) Length = 560 Score = 33.5 bits (75), Expect = 0.47 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHL 376 L D+G + Q + L G FAF+L DT +K F+ D G P F + + L Sbjct: 103 LYDKGGI--EQTICMLDGVFAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFL 154
>ASNS_RAT (P49088) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 33.1 bits (74), Expect = 0.61 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDN 358 L D+G + + + L G FAFIL DT +K F+ D G P F + + L + Sbjct: 103 LYDKGGI--EKTICMLDGVFAFILLDTANKKVFLGRDTYGVRPLFKALTEDGFLAVCSEA 160 Query: 357 ELLKAGCGNSFAPFPK 310 + L +S PF K Sbjct: 161 KGL-VSLKHSTTPFLK 175
>ASNS_MOUSE (Q61024) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 33.1 bits (74), Expect = 0.61 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDN 358 L D+G + + + L G FAFIL DT +K F+ D G P F + + L + Sbjct: 103 LYDKGGI--EKTICMLDGVFAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEA 160 Query: 357 ELLKAGCGNSFAPFPK 310 + L +S PF K Sbjct: 161 KGL-VSLKHSTTPFLK 175
>ASNS_CHICK (Q5ZJU3) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 32.7 bits (73), Expect = 0.80 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = -1 Query: 537 LRDRGPLPASQVVRDLSGRFAFILYDTVSKSTFVAADADGSIPFF 403 L +RG + Q L G FAFIL DT ++ F+A D G P F Sbjct: 103 LYNRGGI--EQTASMLDGVFAFILLDTANRKVFLARDTYGVRPLF 145
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 32.7 bits (73), Expect = 0.80 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = -1 Query: 501 VRDLSGRFAFILYDTVSKSTFVAADADG--SIPFFWGVDSEDHLVFSDDNELLKAGCGNS 328 V L G F+F+L D+ + A DA G S+ WG+D + S + + L C N Sbjct: 113 VEMLDGMFSFVLLDSRDNTFIAARDAFGITSLYIGWGLDGS--VWISSELKGLHDECEN- 169 Query: 327 FAPFPKGCFYTT-SGGLQSFEHPLNELKAVP 238 F FP G Y++ + G + + +P +A+P Sbjct: 170 FEVFPPGHVYSSKTEGFRRWYNPPWFSEAIP 200
>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (Cholesterol efflux regulatory protein) Length = 2261 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +1 Query: 394 DAPEEGDTA--ISISSDEGGFRHRVVQDESKPSTEISHDLAGWERAPVPEGSVGLNQDGN 567 DAPE+ T ++ + + GF R ++ P T W APVP+ + L Q+GN Sbjct: 1394 DAPEDTGTLELLNALTKDPGFGTRCMEGNPIPDTPCQAGEEEWTTAPVPQTIMDLFQNGN 1453
>ASNS2_YEAST (P49090) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 571 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -1 Query: 492 LSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSE--DHLVFSDDNELLKAGCGNSFAP 319 L G FAF LYD+ A D G + + G S+ + + F+ + + L C +S Sbjct: 115 LDGMFAFCLYDSKKDRIVAARDPIGVVTLYMGRSSQSPETVYFASELKCLTDVC-DSIIS 173 Query: 318 FPKGCFY 298 FP G Y Sbjct: 174 FPPGHVY 180
>PYRC_SERMA (Q9S3S1) Dihydroorotase (EC 3.5.2.3) (DHOase) (Fragment)| Length = 204 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = -1 Query: 471 ILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDNELLKAGCGNSFAPFPK-GCFYT 295 IL V + A A GS FF G DS HL ++ AGC N+ P + Sbjct: 81 ILKRNVHQEALRQAVASGSDRFFLGTDSAPHLKHRKESSCGCAGCFNAPNAIPAYAAVFE 140 Query: 294 TSGGLQSFE 268 G L+ FE Sbjct: 141 QLGALEHFE 149
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = -2 Query: 542 EPSGTGALSQPARS*EISVDGLLSSCTTRCRNPPSSLLMLMAVSPSSGASTPKTTLCSLT 363 EPS +S V LSS T+ NP ++ L + SPSS +++P +T S + Sbjct: 159 EPSSASIISP--------VTSTLSSTTSS--NPTTTSLSSTSTSPSSTSTSPSSTSTSSS 208 Query: 362 TMSFSRQGAETHSRH---SPKAAST 297 + S S T S SP + ST Sbjct: 209 STSTSSSSTSTSSSSTSTSPSSTST 233
>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) Length = 2261 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +1 Query: 394 DAPEEGDTA--ISISSDEGGFRHRVVQDESKPSTEISHDLAGWERAPVPEGSVGLNQDGN 567 DAPE+ T ++ + + GF R ++ P T W +PVP+ V L Q+GN Sbjct: 1394 DAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLAGEEDWTISPVPQSIVDLFQNGN 1453
>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor| Length = 1322 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 476 LSSCTTR-CRNPPSSLLMLMAVSPSSGASTPKTTLCSLTTMSFSRQGAET 330 ++SC + C SS ++ A SGA+T TT C ++T ++Q ET Sbjct: 1025 VTSCESHVCTESISSAIVSTATVTVSGATTEYTTWCPISTTEITKQTTET 1074
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = -2 Query: 473 SSCTTRCRNPPSSLLMLMAVSPSSGASTPKTTLCSLTTMSFSRQGAETHSRHSPKAASTP 294 S+ TT R PP+ + ++ P TT C +T + + THS +PK T Sbjct: 77 STTTTTTRAPPTKPTCKSTSTTTTTTRAPPTTTCKTSTTTTTTHKPTTHS--TPKTKPTK 134 Query: 293 H 291 H Sbjct: 135 H 135
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 30.0 bits (66), Expect = 5.2 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%) Frame = +2 Query: 152 PTRGIPESFLASLSTLKVEPHIWPWLSTRGTAFSSFSGCSKLCSPPDVV*KQPLGNGANE 331 PT G ES + S K P +RG+A K SP QP G+ A+ Sbjct: 1441 PTSGDDESGMGRPSPFKS-----PLAGSRGSAHGCSRHLQKRNSPSQEELLQPAGSEASS 1495 Query: 332 FPH----------------PALRSSLSSENTRWSSESTPQKK---GILPSASAATKVDFD 454 PH P L S +S ++R +P++ G P++++ K+ Sbjct: 1496 EPHNSTGESCLPRRELEGTPYLGSGISLFSSRDPESESPKEPAHIGTTPASTSVLKIPQG 1555 Query: 455 TVSYRMKA 478 V++R A Sbjct: 1556 QVAFRSAA 1563
>HUTG_HALSA (Q9HQD7) Probable formimidoylglutamase (EC 3.5.3.8)| (Formiminoglutamase) (Formiminoglutamate hydrolase) Length = 306 Score = 29.6 bits (65), Expect = 6.7 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -1 Query: 501 VRDLSGRFAFILYDTVSKSTFVAADADGSIPFFW-GVDSEDHLVFSDDNELLKAGCGNSF 325 +RD GR + S VAAD DGS+ +D DH+ S D ++L A + Sbjct: 195 LRDQGGR--------IVTSDAVAADRDGSLDAAREALDGVDHVYVSVDIDVLDAAYPGAS 246 Query: 324 APFPKG 307 AP P G Sbjct: 247 APTPGG 252
>ODO1_PETHY (Q50EX6) ODORANT1 protein (MYB-like protein ODO1)| Length = 294 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +2 Query: 290 DVV*KQPLGNGANEFPHPALRSSLSSENTRWSSESTPQKKGILPSASAATKVDFDTVS 463 D V +PL AN P S + EN + PQ + +A+AAT +FD S Sbjct: 122 DPVTHEPLKKEANLSDQPTTESDQNKENGHQQVQVVPQSTNV--TAAAATSTEFDNNS 177
>ASNH1_METJA (Q58516) Putative asparagine synthetase [glutamine-hydrolyzing] 1| (EC 6.3.5.4) Length = 541 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 501 VRDLSGRFAFILYDTVSKSTFVAADADGSIPFFWGVDSEDHLVFSDDNELL 349 + +L G +AF +YD +A D G P F+ VD + + F+ + + L Sbjct: 129 LEELDGDYAFAIYDKSKNVVRLARDMFGVKPLFY-VDRDKYFAFASERKAL 178
>X_WHVW6 (P11294) Trans-activating protein X| Length = 141 Score = 29.3 bits (64), Expect = 8.8 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +2 Query: 266 CSKLCSPPDVV*KQPLG--NGANEFPHPALRSSLSSENTRWSSESTPQKKGILPSASAA 436 C +L S DV+ +P+G + FP PA S+ SS ++ S+ + G LP+ A+ Sbjct: 6 CCQLDSARDVLLLRPIGPQSSGPPFPRPAAGSAASSASSPSPSDESDLPLGRLPACFAS 64
>DNBI_EHV1V (Q6S6P0) Major DNA-binding protein| Length = 1209 Score = 29.3 bits (64), Expect = 8.8 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Frame = +1 Query: 85 CQDWQFTTRVIELVVVRPISGTTDARDPRVLLGL--AVDLEGGATHLALAVHAWHGL--- 249 C+ F T V E + + G P V + AV GA LAV W GL Sbjct: 1044 CEAGGFGTGVRENTLSEQVRGIVSEGGPMVQTAVFAAVLHALGARTQHLAVDDWIGLVDD 1103 Query: 250 QFVQRMLEALQPSRCGVEAAFGEWRE*VSAPCLEKLIVVREHKVVFGVDAPEEG 411 +F+ L+AL + V FGEW S ++L+ E + G A EG Sbjct: 1104 EFLAASLDALNAT---VVDQFGEW----SVEAAQELVKNMEAQTTAGAVAAGEG 1150
>DNBI_EHV1B (P28932) Major DNA-binding protein| Length = 1209 Score = 29.3 bits (64), Expect = 8.8 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Frame = +1 Query: 85 CQDWQFTTRVIELVVVRPISGTTDARDPRVLLGL--AVDLEGGATHLALAVHAWHGL--- 249 C+ F T V E + + G P V + AV GA LAV W GL Sbjct: 1044 CEAGGFGTGVRENTLSEQVRGIVSEGGPMVQTAVFAAVLHALGARTQHLAVDDWIGLVDD 1103 Query: 250 QFVQRMLEALQPSRCGVEAAFGEWRE*VSAPCLEKLIVVREHKVVFGVDAPEEG 411 +F+ L+AL + V FGEW S ++L+ E + G A EG Sbjct: 1104 EFLAASLDALNAT---VVDQFGEW----SVEAAQELVKNMEAQTTAGAVAAGEG 1150
>EX7L_PSESM (Q886X9) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 459 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +2 Query: 305 QPLGNGANEFPHPALRSSLSSENTRWSSEST-----PQKKGILPSASAATKVDFDTVSYR 469 +P G+GA AL++ LS E + PQ+ GI+ S + A D +V R Sbjct: 109 EPAGDGALRLAFDALKAKLSDEGLFSADRKVALPLHPQRIGIISSPTGAVIRDIISVFRR 168 Query: 470 MKANRPLRSLTTWLAGRGPLSRRV 541 L + T + GR +++ V Sbjct: 169 RAPRVELTLIPTAVQGREAINQIV 192
>MYOM1_MOUSE (Q62234) Myomesin-1 (Skelemin)| Length = 1666 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/77 (27%), Positives = 29/77 (37%) Frame = +2 Query: 203 VEPHIWPWLSTRGTAFSSFSGCSKLCSPPDVV*KQPLGNGANEFPHPALRSSLSSENTRW 382 V P +WP LS + G SPP LG+ N+ P+ SS + Sbjct: 818 VSPDVWPQLSDTPGGLTDSRGGMNGASPPTSQKDALLGSNPNKPSPPSSPSSRGQKEVST 877 Query: 383 SSESTPQKKGILPSASA 433 SES + P +A Sbjct: 878 VSESVQEPLSSPPQEAA 894
>DNBI_EHV1 (Q03444) Major DNA-binding protein (Fragment)| Length = 375 Score = 29.3 bits (64), Expect = 8.8 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Frame = +1 Query: 85 CQDWQFTTRVIELVVVRPISGTTDARDPRVLLGL--AVDLEGGATHLALAVHAWHGL--- 249 C+ F T V E + + G P V + AV GA LAV W GL Sbjct: 210 CEAGGFGTGVRENTLSEQVRGIVSEGGPMVQTAVFAAVLHALGARTQHLAVDDWIGLVDD 269 Query: 250 QFVQRMLEALQPSRCGVEAAFGEWRE*VSAPCLEKLIVVREHKVVFGVDAPEEG 411 +F+ L+AL + V FGEW S ++L+ E + G A EG Sbjct: 270 EFLAASLDALNAT---VVDQFGEW----SVEAAQELVKNMEAQTTAGAVAAGEG 316
>KARG_LIOJA (O15990) Arginine kinase (EC 2.7.3.3) (AK)| Length = 349 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 390 SEDHLVFSDDNELLKAGCGNSFAPFPKGCFY 298 +EDH +F+D + LKA G P +G F+ Sbjct: 176 TEDHFLFNDSDRFLKAASGYDDWPTGRGIFF 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,317,776 Number of Sequences: 219361 Number of extensions: 1675865 Number of successful extensions: 5873 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5864 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
