>SEC7_YEAST (P11075) Protein transport protein SEC7|
          Length = 2009

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -1

Query: 667 ENLGSPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEVGKNGTRQPDSDSKPESEWVEQDE 488
           EN GS   + E  ++ +NG+          +K H + G++G    D D   + +  ++D+
Sbjct: 55  ENAGSTAETKETSNDATNGMKTPEETEDTNDKRHDDEGEDGDEDEDEDEDEDEDNGDEDD 114

Query: 487 PGV 479
             V
Sbjct: 115 EDV 117

>ADRB2_MESAU (P04274) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 418

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  Q     +    LLN+LGY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIQDNLIPKEVYILLNWLGYVNSAFNPLIY 326

>ADRB2_RAT (P10608) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 418

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  ++    +    LLN+LGY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIRANLIPKEVYILLNWLGYVNSAFNPLIY 326

>ADRB2_FELCA (Q9TST5) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 418

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  Q     +    LLN++GY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIQDNLIPKEVYILLNWVGYVNSAFNPLIY 326

>ADRB2_BOVIN (Q28044) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 418

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  +     +    LLN+LGY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIKDNLIRKEIYILLNWLGYINSAFNPLIY 326

>ADRB2_CANFA (P54833) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 415

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  Q     +    LLN++GY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIQDNLIPKEVYILLNWVGYVNSAFNPLIY 326

>ADRB2_HUMAN (P07550) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 413

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  Q     +    LLN++GY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY 326

>ADRB2_MOUSE (P18762) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 418

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  +     +    LLN+LGY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIRDNLIPKEVYILLNWLGYVNSAFNPLIY 326

>HORN_MOUSE (Q8VHD8) Hornerin|
          Length = 2496

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 655 SPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEV-GKNGTRQPDSDSKPESEWVEQDEPG 482
           S + SGE YS+G+     S+G S+V    H    GK GT    S S   S    ++  G
Sbjct: 216 STKGSGECYSSGNGKHGSSSGGSAVSGSGHSNTYGKQGTGSRHSSSNRRSRSTSRESSG 274

>ADRB2_MACMU (Q28509) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor)
          Length = 415

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 544 FRSCQLPGESYF*LNLVH*KQSTH*TRSNMALLNFLGYLNSQL-PLIY 684
           F  C LP   +F +N+VH  Q     +    LLN++GY+NS   PLIY
Sbjct: 282 FTLCWLP---FFIVNIVHVIQDNLIPKEVYILLNWVGYVNSGFNPLIY 326

>YAEQ_SHIFL (P0AA98) Hypothetical protein yaeQ|
          Length = 181

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -1

Query: 544 TRQPDSDSKPESEWVEQDEPGVYITLTALPGGARDLKRA-----RFSRKRFSETQAEQWW 380
           TR   +D +PE+ W+  D  G+ + +       R +K+A       +   ++   A+ WW
Sbjct: 58  TRGLCADDEPEA-WLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWW 116

Query: 379 QENRARVYELYNVRV 335
           Q+N+++  +  N+ V
Sbjct: 117 QQNQSKCVQFANLSV 131

>YAEQ_ECOLI (P0AA97) Hypothetical protein yaeQ|
          Length = 181

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -1

Query: 544 TRQPDSDSKPESEWVEQDEPGVYITLTALPGGARDLKRA-----RFSRKRFSETQAEQWW 380
           TR   +D +PE+ W+  D  G+ + +       R +K+A       +   ++   A+ WW
Sbjct: 58  TRGLCADDEPEA-WLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWW 116

Query: 379 QENRARVYELYNVRV 335
           Q+N+++  +  N+ V
Sbjct: 117 QQNQSKCVQFANLSV 131

>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor|
          Length = 932

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 547 GTRQPDSDSKPESEWVEQDEPGVYITLTALPGGARDLK 434
           G  +PD D++      +Q EPG     +A PGGA+ +K
Sbjct: 250 GESEPDIDTQASEGTEDQGEPGPAAEASAEPGGAQSVK 287

>XYLB_STRRU (P27156) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 481

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 483 GSTLPLLPYLEGQEISREPVSAGSVLARRKQSNGGKRIEQGYTSCI 346
           G  + LLP+L+G+     P S+G +   R  + GG+ ++  Y   +
Sbjct: 319 GHGVTLLPFLDGERTPNLPRSSGLLHGLRHDTTGGQLLQAAYDGAV 364

>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 690

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -1

Query: 682 ISMATENLGSPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEVGKNGTRQPDSDSKPESEW 503
           I+   ++  S   SG      S  LT S   + VR + H    K   RQPD  S+PE + 
Sbjct: 306 IAQEPQSQPSKTPSGGAEEVPSKPLTASGRKNFVRERPHTTSSKQ--RQPDVKSEPERQS 363

Query: 502 VEQDE 488
             QDE
Sbjct: 364 PTQDE 368

>ECM13_YEAST (P38195) Extracellular matrix protein 13|
          Length = 257

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -1

Query: 679 SMATENLGSPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEVGKNGTRQPDSDSKPESEWV 500
           ++ T N  +   +G+P+S G   L++ +   S  N +  +VGK    +   +S+   ++ 
Sbjct: 53  NVETHNAATNALAGDPFSKGPENLSIEHIELSNANASKNDVGKEENAEKTIESEDYCDFY 112

Query: 499 EQDE 488
             DE
Sbjct: 113 SSDE 116

>SEC9_YARLI (Q6C5G0) Protein transport protein SEC9|
          Length = 608

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 658 GSPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEVGKNGT 542
           GSP    +PYSNG  G    NG S+    ++   G NG+
Sbjct: 89  GSPYGGSDPYSNGGGG----NGGSNSNGGSNSNGGSNGS 123

>EFTU_BACSU (P33166) Elongation factor Tu (EF-Tu) (P-40)|
          Length = 396

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 187 RKSAKENASPHFPNSSTPSFFQALINLATKHMLYVSEVHHYQYWQLICPPHEHY 348
           +KS K  A  +      P   +  I ++T H+ Y +E  HY +  + CP H  Y
Sbjct: 38  KKSGKGTAMAYDQIDGAPEERERGITISTAHVEYETETRHYAH--VDCPGHADY 89

>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -1

Query: 676  MATENLGSPRNSGEPYSNGSNGLTVSNGPSSVRNKTHLEVGKNGTRQP----DSDSKPES 509
            +A +  G P +SG+  S+   G   S GP+S       E G   +  P      D   ES
Sbjct: 2346 LAIKTFGQPPSSGDAGSSTGAGAAESGGPTSPGEPAPSETGSASSMPPLEGEPGDPDLES 2405

Query: 508  EWVEQDEP 485
            + VE   P
Sbjct: 2406 DQVELQPP 2413

>TAF1_HUMAN (P21675) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 250 kDa
            subunit) (TAF(II)250) (TAFII-250) (TAFII250)
            (TBP-associated factor 250 kDa) (p250) (Cell cycle gene 1
            protein)
          Length = 1872

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = -1

Query: 535  PDSDSKPESEWVEQDEPGVYITLTALPGGARDLKRARFSRKRFSETQAEQWWQENRARVY 356
            P+ + K  S W   D      T  A  G     K AR SR  FS  + ++ ++E   R++
Sbjct: 1013 PEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSR--FSVAEHQERYKEECQRIF 1070

Query: 355  ELYNVRVVDKSVASIDSD 302
            +L N  +    V S D+D
Sbjct: 1071 DLQNKVLSSTEVLSTDTD 1088

>RPGR1_HUMAN (Q96KN7) X-linked retinitis pigmentosa GTPase regulator-interacting|
            protein 1 (RPGR-interacting protein 1)
          Length = 1286

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = -2

Query: 582  LEIRLTWKLARTEPDSPIR----TLSLSLNG*SKMNQGSTLPLLPYLEGQEISREPVSAG 415
            ++++L WK     P+S ++    T        SK++        P  +       P+ AG
Sbjct: 919  IQVQLDWKFPYIPPESFLKPEAQTKGKDTKDSSKISSEEEKASFPSQDQMASPEVPIEAG 978

Query: 414  SVLARRKQSNGGKRIEQ 364
               ++RK  +GG+R E+
Sbjct: 979  QYRSKRKPPHGGERKEK 995


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,102,117
Number of Sequences: 219361
Number of extensions: 2009225
Number of successful extensions: 6124
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6110
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)