ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila D... 30 4.5
2NRAM1_CHICK (P51027) Natural resistance-associated macrophage pr... 30 5.9
3K6PP_MOUSE (Q9WUA3) 6-phosphofructokinase type C (EC 2.7.1.11) (... 30 5.9
4Y876_METJA (Q58286) Putative ABC transporter permease protein MJ... 30 5.9
5SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor 30 5.9
6TRMD_AZOSE (Q5NXM5) tRNA (guanine-N(1)-)-methyltransferase (EC 2... 30 7.7
7LPXK_METCA (Q60B49) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 30 7.7

>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3)
          Length = 618

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +2

Query: 317 WTSPSCRSPAQ-SCAVCPACPSXXXXXXXXXXPPQCKGTPPAHRKPCRG*PR 469
           WT P C  P   S  + P  PS          P  C G P A+   C   PR
Sbjct: 243 WTGPLCTVPVSTSSCLSPRGPSSATTGCLVPGPGPCDGNPCANGGSCSETPR 294



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>NRAM1_CHICK (P51027) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 555

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 495 LETLRRLSFLVPLGDILPEALLFLAFIIGVVAVIHSIHKVLR 620
           L TLR L +L+PLG +L   + F+ +++   ++ H    + R
Sbjct: 493 LPTLRGLGYLIPLGLLLVAYVAFVTYLLWTCSIAHGARFLAR 534



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>K6PP_MOUSE (Q9WUA3) 6-phosphofructokinase type C (EC 2.7.1.11)|
           (Phosphofructokinase 1) (Phosphohexokinase)
           (Phosphofructo-1-kinase isozyme C) (PFK-C)
          Length = 784

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 629 GVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQGFQALISWSFPPAVILGM 450
           G++    ++ +YDG   +  GQ K+  W DV  W  +                   ILG 
Sbjct: 435 GIADGHKMFAIYDGFEGFANGQIKEIGWADVGGWTGQG----------------GSILGT 478

Query: 449 AFDVPGEYL 423
              +PG+YL
Sbjct: 479 KRTLPGKYL 487



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>Y876_METJA (Q58286) Putative ABC transporter permease protein MJ0876|
          Length = 351

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +3

Query: 525 VPLGDILPEALLFLAFIIGVVAVIHSIHKVL 617
           + LGD++P  +  + FIIGV+ +I S++ +L
Sbjct: 193 ITLGDVIPMTICSIIFIIGVMFLIKSLNALL 223



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>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor|
          Length = 2176

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 605  YGVYDGH-----HTYDEGQEKKGFWEDVSEWYQEAEPPQGFQALISWSFPPAVI 459
            YG  DGH     HT  +  E++   ED+ EW +     Q F A+ S  +  AV+
Sbjct: 1142 YGRSDGHGKTLSHTVQDRVEREYTIEDLEEWTEYRVQVQAFNAIGSGPWSQAVV 1195



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>TRMD_AZOSE (Q5NXM5) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 263

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 365 DKPHNFEPEIYMMERSKRDKLIADYNSMDIWDFNEKYGELWDFTVNRDDLIQ 210
           D PH   PEIY  ER  +  L  ++ ++  W   +  G  W     R DL+Q
Sbjct: 188 DCPHYTRPEIYAGERVPQVLLSGNHAAIRRWRLKQALGTTWR---RRPDLLQ 236



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>LPXK_METCA (Q60B49) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 336

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 533 EWYQEAEPPQGFQALISWSFPPAVILGMAFDVPGEYLYIGAAIFIV 396
           +WY EA+PP G +AL S  F  AV L   +      + +G  + +V
Sbjct: 15  QWYAEAQPPWGLRAL-SRGFGAAVALRRGYYRRNAKVSLGVPVIVV 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,871,987
Number of Sequences: 219361
Number of extensions: 1892417
Number of successful extensions: 4670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4669
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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