ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30g07 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 213 bits (541), Expect = 4e-55 Identities = 102/131 (77%), Positives = 117/131 (89%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N+I RH RLG ATRLAV AWGLKNCT+KEE S+TVTAV+VPP+ID SEIV+ AW+RY Sbjct: 271 LENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRY 330 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 224 NLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM+LKD+GYPV +GSGVAAA+ YL Sbjct: 331 NLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYL 390 Query: 223 SNSTPLIPSRI 191 + PLIPSRI Sbjct: 391 QHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 146 bits (369), Expect = 4e-35 Identities = 74/120 (61%), Positives = 91/120 (75%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+NV RH LG ATR AVAAWGLK C + E SDTVTA++ P +D+++I+KHA+ RY Sbjct: 252 LENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRY 311 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 224 NL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM L D G V GSGVAAA++YL Sbjct: 312 NLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 141 bits (356), Expect = 1e-33 Identities = 73/123 (59%), Positives = 88/123 (71%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 LDNV RHTRL + R AV AWGLK C ++ + +SDTV+A++VP IDS+ I K A+ RY Sbjct: 266 LDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRY 325 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 224 N S GLGLNKVAGKVFRIGHLG L+E+ + G L EM LKD G +KLGSG AAA Y Sbjct: 326 NTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYF 385 Query: 223 SNS 215 S + Sbjct: 386 SKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 76.3 bits (186), Expect = 6e-14 Identities = 47/120 (39%), Positives = 68/120 (56%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 ++N +KRH RL ATR + A G++ KE S TVT+ P I+ S+ +Y Sbjct: 265 IENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKY 323 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 224 N+ + G +AGK+FRIGH+G E ++L L VE+ LK++G+ VK SGV A L Sbjct: 324 NIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 72.8 bits (177), Expect = 7e-13 Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+++ RH R ATR A+ A L +E S +TAV P +++ +I KR+ Sbjct: 263 LESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATPG-MEADKIRSLMKKRF 320 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VKLGSGVAAAAAY 227 +++L G + ++ K+FR+GHLG +++ +L C+ +E+VL ++G+ G+GVAAAA Sbjct: 321 DIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARV 380 Query: 226 LSN 218 SN Sbjct: 381 FSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 67.0 bits (162), Expect = 4e-11 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+ + +RH RL ATR A+ A L + S +TAV P +++ I KR+ Sbjct: 263 LEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAVA-PQGVEAENIRSLMKKRF 320 Query: 403 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VKLGSGVAAAAAY 227 +++L G + + G++FRIGHLG + + +L + +E VL ++GY G+GVAAA+ Sbjct: 321 DIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRV 380 Query: 226 LSNS 215 LS + Sbjct: 381 LSTA 384
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 433 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 266 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 265 VK 260 VK Sbjct: 135 VK 136
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/83 (30%), Positives = 37/83 (44%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N +RH + GLK + E T+T V VP + +IV + + Sbjct: 306 LENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHF 365 Query: 403 NLSLGLGLNKVAGKVFRIGHLGH 335 N+ + GL KV RIG LG+ Sbjct: 366 NIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 39.3 bits (90), Expect = 0.008 Identities = 25/82 (30%), Positives = 38/82 (46%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N ++H + A GL+ + TVT V VP D +IV + +R+ Sbjct: 306 LENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDWRDIVSYLIERF 365 Query: 403 NLSLGLGLNKVAGKVFRIGHLG 338 + + GL GKV RIG +G Sbjct: 366 GIEITGGLGPSTGKVLRIGLMG 387
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 39.3 bits (90), Expect = 0.008 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+ +RH A + A GL+ + VT V +P ID + ++ Sbjct: 288 LETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDGESVRDMLLAQF 346 Query: 403 NLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAY 227 + + +AGK++RIG +G+ + +L L G+E VL ++ G + AA Sbjct: 347 GIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDV 406 Query: 226 LSNS 215 N+ Sbjct: 407 YENA 410
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 37.0 bits (84), Expect = 0.041 Identities = 25/82 (30%), Positives = 37/82 (45%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N ++H + A GL+ + TVT V VP D +IV + + Sbjct: 284 LENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHF 343 Query: 403 NLSLGLGLNKVAGKVFRIGHLG 338 ++ + GL GKV RIG LG Sbjct: 344 DIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 36.2 bits (82), Expect = 0.070 Identities = 24/82 (29%), Positives = 37/82 (45%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N ++H + + GL+ + TVT V VP D +IV + + Sbjct: 306 LENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVNYVMDHF 365 Query: 403 NLSLGLGLNKVAGKVFRIGHLG 338 ++ + GL GKV RIG LG Sbjct: 366 DIEITGGLGPSMGKVLRIGLLG 387
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 33.1 bits (74), Expect = 0.60 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 Query: 475 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 338 TVT V+VP +IV + + + + GL A KV RIG LG Sbjct: 320 TVTTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.78 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 217 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 309 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 219 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 350 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/83 (26%), Positives = 36/83 (43%) Frame = -1 Query: 583 LDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRY 404 L+N +RH + GLK + E T+T V Y + +IV + + Sbjct: 306 LENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NWRDIVSYVLDHF 364 Query: 403 NLSLGLGLNKVAGKVFRIGHLGH 335 ++ + GL +V RIG LG+ Sbjct: 365 SIEISGGLGPTEERVLRIGLLGY 387
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 217 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 315 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -1 Query: 574 VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNL 398 V +R L TR ++ W GL+ T S +TA +PP D++ + W R+ + Sbjct: 301 VRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLRHGLWDRFRI 360 Query: 397 SLGLGLNKVAGKVFRI 350 + + L++ G + R+ Sbjct: 361 DVPV-LDRPDGPLLRV 375
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 195 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 353 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -3 Query: 308 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 141 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,107,403 Number of Sequences: 219361 Number of extensions: 1502063 Number of successful extensions: 6100 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6075 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
