ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30f17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195383.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041L14.16), mRNA Length = 1656 Score = 60.0 bits (30), Expect = 1e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 589 gacacatcaaaatagaaatccatgccattaacagtccttggaggtagcttcattccgttt 648 ||||| |||||||||||||| ||||||||||| | |||||||| |||| ||| || || Sbjct: 1361 gacacgtcaaaatagaaatctctgccattaacattgcttggaggaagctccatcccattg 1302 Query: 649 acagatttattctcttgtttaataaggttattttgatt 686 || | |||||||||||| || || | || ||||||||| Sbjct: 1301 actggtttattctcttgcttgatcacgtcattttgatt 1264 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Minus Query: 476 gatttccgttcacatattgaactgttgaaaaagctgaaggaagcaaataagctctttcca 535 ||||| ||||||| | ||||| | |||| |||| |||||||||| ||| |||||||||| Sbjct: 1474 gattttcgttcacgtcttgaatagctgaagaagcggaaggaagcagataggctctttcca 1415 Query: 536 tggagttctctatcctctgata 557 | || || ||||| |||||||| Sbjct: 1414 tagaattttctattctctgata 1393 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 ttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 350 ||||||||| |||||||||| | ||||||||||| ||||| |||||||| Sbjct: 1656 ttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1606
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 60.0 bits (30), Expect = 1e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 589 gacacatcaaaatagaaatccatgccattaacagtccttggaggtagcttcattccgttt 648 ||||| |||||||||||||| ||||||||||| | |||||||| |||| ||| || || Sbjct: 75373 gacacgtcaaaatagaaatctctgccattaacattgcttggaggaagctccatcccattg 75432 Query: 649 acagatttattctcttgtttaataaggttattttgatt 686 || | |||||||||||| || || | || ||||||||| Sbjct: 75433 actggtttattctcttgcttgatcacgtcattttgatt 75470 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 476 gatttccgttcacatattgaactgttgaaaaagctgaaggaagcaaataagctctttcca 535 ||||| ||||||| | ||||| | |||| |||| |||||||||| ||| |||||||||| Sbjct: 75260 gattttcgttcacgtcttgaatagctgaagaagcggaaggaagcagataggctctttcca 75319 Query: 536 tggagttctctatcctctgata 557 | || || ||||| |||||||| Sbjct: 75320 tagaattttctattctctgata 75341 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 298 gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 350 ||||||||||| |||||||||| | ||||||||||| ||||| |||||||| Sbjct: 75076 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 75128
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 1e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 589 gacacatcaaaatagaaatccatgccattaacagtccttggaggtagcttcattccgttt 648 ||||| |||||||||||||| ||||||||||| | |||||||| |||| ||| || || Sbjct: 6526807 gacacgtcaaaatagaaatctctgccattaacattgcttggaggaagctccatcccattg 6526748 Query: 649 acagatttattctcttgtttaataaggttattttgatt 686 || | |||||||||||| || || | || ||||||||| Sbjct: 6526747 actggtttattctcttgcttgatcacgtcattttgatt 6526710 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Minus Query: 476 gatttccgttcacatattgaactgttgaaaaagctgaaggaagcaaataagctctttcca 535 ||||| ||||||| | ||||| | |||| |||| |||||||||| ||| |||||||||| Sbjct: 6526920 gattttcgttcacgtcttgaatagctgaagaagcggaaggaagcagataggctctttcca 6526861 Query: 536 tggagttctctatcctctgata 557 | || || ||||| |||||||| Sbjct: 6526860 tagaattttctattctctgata 6526839 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 298 gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 350 ||||||||||| |||||||||| | ||||||||||| ||||| |||||||| Sbjct: 6527104 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6527052
>dbj|AK068249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146P20, full insert sequence Length = 2388 Score = 60.0 bits (30), Expect = 1e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 589 gacacatcaaaatagaaatccatgccattaacagtccttggaggtagcttcattccgttt 648 ||||| |||||||||||||| ||||||||||| | |||||||| |||| ||| || || Sbjct: 1560 gacacgtcaaaatagaaatctctgccattaacattgcttggaggaagctccatcccattg 1501 Query: 649 acagatttattctcttgtttaataaggttattttgatt 686 || | |||||||||||| || || | || ||||||||| Sbjct: 1500 actggtttattctcttgcttgatcacgtcattttgatt 1463 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Minus Query: 476 gatttccgttcacatattgaactgttgaaaaagctgaaggaagcaaataagctctttcca 535 ||||| ||||||| | ||||| | |||| |||| |||||||||| ||| |||||||||| Sbjct: 1673 gattttcgttcacgtcttgaatagctgaagaagcggaaggaagcagataggctctttcca 1614 Query: 536 tggagttctctatcctctgata 557 | || || ||||| |||||||| Sbjct: 1613 tagaattttctattctctgata 1592 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 298 gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 350 ||||||||||| |||||||||| | ||||||||||| ||||| |||||||| Sbjct: 1857 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1805
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 1e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 589 gacacatcaaaatagaaatccatgccattaacagtccttggaggtagcttcattccgttt 648 ||||| |||||||||||||| ||||||||||| | |||||||| |||| ||| || || Sbjct: 6529193 gacacgtcaaaatagaaatctctgccattaacattgcttggaggaagctccatcccattg 6529134 Query: 649 acagatttattctcttgtttaataaggttattttgatt 686 || | |||||||||||| || || | || ||||||||| Sbjct: 6529133 actggtttattctcttgcttgatcacgtcattttgatt 6529096 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Minus Query: 476 gatttccgttcacatattgaactgttgaaaaagctgaaggaagcaaataagctctttcca 535 ||||| ||||||| | ||||| | |||| |||| |||||||||| ||| |||||||||| Sbjct: 6529306 gattttcgttcacgtcttgaatagctgaagaagcggaaggaagcagataggctctttcca 6529247 Query: 536 tggagttctctatcctctgata 557 | || || ||||| |||||||| Sbjct: 6529246 tagaattttctattctctgata 6529225 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 298 gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 350 ||||||||||| |||||||||| | ||||||||||| ||||| |||||||| Sbjct: 6529490 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6529438
>gb|AY107073.1| Zea mays PCO090813 mRNA sequence Length = 690 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Minus Query: 524 aagctctttccatggagttctctatcctctgata 557 |||| ||||||||||| ||||||||||||||||| Sbjct: 111 aagccctttccatggaattctctatcctctgata 78
>ref|XM_478188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4057 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ccatggagttctctatcctctg 554 |||||||||||||||||||||| Sbjct: 3447 ccatggagttctctatcctctg 3426
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ccatggagttctctatcctctg 554 |||||||||||||||||||||| Sbjct: 18285463 ccatggagttctctatcctctg 18285484
>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1218_C12 Length = 105861 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ccatggagttctctatcctctg 554 |||||||||||||||||||||| Sbjct: 88706 ccatggagttctctatcctctg 88727
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ccatggagttctctatcctctg 554 |||||||||||||||||||||| Sbjct: 14958 ccatggagttctctatcctctg 14979
>dbj|AK067461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102E06, full insert sequence Length = 4056 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ccatggagttctctatcctctg 554 |||||||||||||||||||||| Sbjct: 3446 ccatggagttctctatcctctg 3425
>emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 in linkage group 7, complete sequence Length = 87084 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 tgaatccgaatcaagtattcca 198 |||||||||||||||||||||| Sbjct: 63976 tgaatccgaatcaagtattcca 63955
>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/ pseudouridylate synthase AT1G76050 transcript variant AT1G76050.1 mRNA, complete cds Length = 2223 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatgaa 265 ||||||||||||||||||||| Sbjct: 616 gaaacattttcagatgatgaa 636
>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/ pseudouridylate synthase AT1G76050 transcript variant AT1G76050.2 mRNA, complete cds Length = 2239 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatgaa 265 ||||||||||||||||||||| Sbjct: 651 gaaacattttcagatgatgaa 671
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 cctctgatacataatgagttg 569 ||||||||||||||||||||| Sbjct: 51601 cctctgatacataatgagttg 51621
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence Length = 215147 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 587 cagacacatcaaaatagaaatccat 611 |||||||||||||||| |||||||| Sbjct: 209425 cagacacatcaaaataaaaatccat 209401
>gb|AY046912.1| Farfantepenaeus californiensis 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products Length = 1378 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 666 tttaataaggttattttgatt 686 ||||||||||||||||||||| Sbjct: 364 tttaataaggttattttgatt 344
>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence Length = 215644 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 gaagcaaatctgaaacattttcaga 258 |||||||||||| |||||||||||| Sbjct: 4070 gaagcaaatctggaacattttcaga 4046
>emb|CR644924.2|CNS0EWLE Tetraodon nigroviridis full-length cDNA Length = 756 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 388 gaaatgaattctgttgtttct 408 ||||||||||||||||||||| Sbjct: 471 gaaatgaattctgttgtttct 451
>emb|CR635643.2|CNS0EPFL Tetraodon nigroviridis full-length cDNA Length = 756 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 388 gaaatgaattctgttgtttct 408 ||||||||||||||||||||| Sbjct: 471 gaaatgaattctgttgtttct 451
>emb|AL589764.19| Human DNA sequence from clone RP11-806J18 on chromosome 1 Contains the PSMB4 gene for proteasome (prosome, macropain) subunit beta type 4, the POGZ gene for pogo transposable element with ZNF domain and two CpG islands, complete sequence Length = 126491 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 673 aggttattttgattctccaac 693 ||||||||||||||||||||| Sbjct: 84949 aggttattttgattctccaac 84969
>emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chromosome 6, complete sequence Length = 101064 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 tgaattctgttgtttctgctg 412 ||||||||||||||||||||| Sbjct: 51250 tgaattctgttgtttctgctg 51270
>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class II antigen (DSB), MHC class II antigen (DYA), MHC class II antigen (DYB), MHC class II antigen (DOB), transporter 2 ATP-binding cassette sub-family B (TAP2), proteasome subunit beta type 8 (PSMB8), transporter 1 ATP-binding cassette sub-family B (TAP1), proteosome subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC class II antigen (DMB), MHC class II antigen (DMA), bromodomain containing 2 (BRD2), MHC class II antigen (DOA), collagen type XI alpha 2 (COL11A2), retinoid X receptor beta (RXRB), solute carrier family 39 zinc transporter member 7 (HKE4), and hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes, complete cds; and ring finger protein 1 (RING1) gene, partial cds Length = 447010 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 666 tttaataaggttattttgatt 686 ||||||||||||||||||||| Sbjct: 323118 tttaataaggttattttgatt 323138
>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence Length = 138021 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 gaagcaaatctgaaacattttcaga 258 |||||||||||| |||||||||||| Sbjct: 50604 gaagcaaatctggaacattttcaga 50580
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ttattgatatatagaccattt 468 ||||||||||||||||||||| Sbjct: 761736 ttattgatatatagaccattt 761716 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ttattgatatatagaccattt 468 ||||||||||||||||||||| Sbjct: 304933 ttattgatatatagaccattt 304953
>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatgaa 265 ||||||||||||||||||||| Sbjct: 650 gaaacattttcagatgatgaa 670
>gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, complete sequence Length = 92932 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 tttgactgcttagacctcctagttt 301 |||||||||||||| |||||||||| Sbjct: 29442 tttgactgcttagatctcctagttt 29466
>gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chromosome unknown, complete sequence Length = 172771 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 673 aggttattttgattctccaac 693 ||||||||||||||||||||| Sbjct: 18574 aggttattttgattctccaac 18554
>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I, complete sequence Length = 95870 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatgaa 265 ||||||||||||||||||||| Sbjct: 90589 gaaacattttcagatgatgaa 90609
>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA pseudouridylate synthase, complete cds, clone: RAFL17-47-D22 Length = 1546 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatgaa 265 ||||||||||||||||||||| Sbjct: 608 gaaacattttcagatgatgaa 628
>emb|AL806530.6| Mouse DNA sequence from clone RP23-152B24 on chromosome 4, complete sequence Length = 85718 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttccttttcacctagtgcagacacat 595 ||||| |||||||| |||||||||||||| Sbjct: 64830 ttgttacttttcacttagtgcagacacat 64802
>gb|AC168274.5| Mus musculus BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 177020 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacattacataaatacatt 26 |||||||||||||||||||| Sbjct: 32443 acacattacataaatacatt 32424
>gb|AC104202.13| Mus musculus chromosome 5, clone RP24-558F5, complete sequence Length = 189841 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 666 tttaataaggttattttgattctc 689 |||||||||||| ||||||||||| Sbjct: 25696 tttaataaggtttttttgattctc 25719
>gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome 16, complete sequence Length = 138498 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tctgaaacattttcagatga 261 |||||||||||||||||||| Sbjct: 132960 tctgaaacattttcagatga 132941
>gb|AC005372.1| Homo sapiens chromosome 5, P1 clone 1195e2 (LBNL H73), complete sequence Length = 44957 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacattacataaatacatt 26 |||||||||||||||||||| Sbjct: 25180 acacattacataaatacatt 25161
>gb|AC084315.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353M17, complete sequence Length = 92644 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 545 ctatcctctgatacataatgagtt 568 |||||||||| ||||||||||||| Sbjct: 73804 ctatcctctgctacataatgagtt 73827
>gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, complete sequence Length = 169772 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 acatcaaaatagaaatccat 611 |||||||||||||||||||| Sbjct: 3385 acatcaaaatagaaatccat 3404
>gb|AY813321.1| Schistosoma japonicum SJCHGC05709 protein mRNA, complete cds Length = 970 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 ctctgatacataatgagttg 569 |||||||||||||||||||| Sbjct: 266 ctctgatacataatgagttg 247
>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete sequence Length = 224482 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aatccgaatcaagtattcca 198 |||||||||||||||||||| Sbjct: 100273 aatccgaatcaagtattcca 100292
>gb|AC104102.4| Mus musculus BAC clone RP24-377I13 from 15, complete sequence Length = 187284 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 666 tttaataaggttattttgattctc 689 ||||||| |||||||||||||||| Sbjct: 68799 tttaatagggttattttgattctc 68776
>gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complete sequence Length = 83743 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 gacacattacataaatacattgtc 29 |||||||||||||||| ||||||| Sbjct: 23075 gacacattacataaatccattgtc 23098
>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence Length = 220746 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 546 tatcctctgatacataatgagttg 569 |||||||||||||||| ||||||| Sbjct: 83899 tatcctctgatacatagtgagttg 83922
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two novel pseudogenes, a novel gene, a pseudogene similar to part of double homeobox, 4 (DUX4), a FSHD region gene 1 (FRG1) pseudogene and four CpG islands, complete sequence Length = 191980 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 37274 atagttaattttctcctaaa 37255
>emb|BX119919.5| Human DNA sequence from clone RP11-987D21 on chromosome X, complete sequence Length = 55442 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aaatctgaaacattttcaga 258 |||||||||||||||||||| Sbjct: 1956 aaatctgaaacattttcaga 1937
>emb|AL591385.7| Human DNA sequence from clone RP11-391M20 on chromosome 9 Contains a novel gene similar to phosphoglucomutase 5 (PGM5), a pseudogene similar to part of FSHD region gene 1 (FRG1) and two CpG island, complete sequence Length = 174765 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 40871 atagttaattttctcctaaa 40852
>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGM5) and a CpG island, complete sequence Length = 157266 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 102143 atagttaattttctcctaaa 102162
>emb|AL353756.5| Human DNA sequence from clone RP11-415D9 on chromosome 9, complete sequence Length = 146155 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 646 tttacagatttattctcttgttta 669 ||||||||||||||||| |||||| Sbjct: 6158 tttacagatttattctcatgttta 6181
>gb|AC073176.8| Homo sapiens chromosome 10 clone RP11-432J9, complete sequence Length = 175610 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 acatcaaaatagaaatccat 611 |||||||||||||||||||| Sbjct: 82603 acatcaaaatagaaatccat 82584
>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains a novel gene similar to human and rodent RRAD (Ras-related protein associated with diabetes), a novel gene, a novel gene similar to mouse PNP (purine-nucleoside phosphorylase), a novel gene similar to human and rodent SOX11 (SRY (sex determining region Y)-box 11) and a CpG island, complete sequence Length = 204498 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 aatccgaatcaagtattccatttc 202 |||| ||||||||||||||||||| Sbjct: 18413 aatcagaatcaagtattccatttc 18390
>emb|AL645988.6| Mouse DNA sequence from clone RP23-67J22 on chromosome 11 Contains four novel genes (9130409J20Rik, A530088H08Rik), two genes for a novel proteins (2310004I24Rik, A730055C05Rik, LOC193004), the Sco1 gene for SCO cytochrome oxidase deficient homolog 1 (yeast), the 5' end of the Myh3 gene for skeletal muscle embryonic myosin heavy polypeptide 3 and a CpG island, complete sequence Length = 217003 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 559 ataatgagttgttccttttcacct 582 ||||||||| |||||||||||||| Sbjct: 147672 ataatgagtcgttccttttcacct 147695
>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161577 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 347 acttattagcaggtgaggacacatcctc 374 |||||||| |||||||||||||||||| Sbjct: 85829 acttattaaaaggtgaggacacatcctc 85802
>emb|CR848842.7| Human DNA sequence from clone WI2-2998D17 on chromosome 1, complete sequence Length = 44069 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gcaggtgaggacacatcctctaga 378 ||||||||||||||||||| |||| Sbjct: 14360 gcaggtgaggacacatcctgtaga 14337
>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FSG1) (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5) and four CpG islands, complete sequence Length = 196461 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 42983 atagttaattttctcctaaa 42964
>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence Length = 153040 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 91436 atagttaattttctcctaaa 91417
>gb|AC113167.2| Homo sapiens chromosome 5 clone CTC-529J12, complete sequence Length = 140187 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 atttattctcttgtttaata 672 |||||||||||||||||||| Sbjct: 10210 atttattctcttgtttaata 10191
>gb|AC093749.3| Homo sapiens BAC clone RP11-30B7 from 4, complete sequence Length = 163102 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 9061 atagttaattttctcctaaa 9080
>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete sequence Length = 162793 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 15961 atagttaattttctcctaaa 15980
>gb|AC010301.7| Homo sapiens chromosome 5 clone CTB-2L9, complete sequence Length = 155067 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacattacataaatacatt 26 |||||||||||||||||||| Sbjct: 111586 acacattacataaatacatt 111567
>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete sequence Length = 172519 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 13755 atagttaattttctcctaaa 13736
>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence Length = 19120 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 caaatctgaaacattttcag 257 |||||||||||||||||||| Sbjct: 2275 caaatctgaaacattttcag 2256
>gb|AC008448.7| Homo sapiens chromosome 5 clone CTC-340N24, complete sequence Length = 156821 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 atttattctcttgtttaata 672 |||||||||||||||||||| Sbjct: 79669 atttattctcttgtttaata 79650
>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186278 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aaatctgaaacattttcaga 258 |||||||||||||||||||| Sbjct: 182651 aaatctgaaacattttcaga 182632
>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1 Length = 87210 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 atttatagttaattttctcctaaa 61 |||||| ||||||||||||||||| Sbjct: 71358 atttatcgttaattttctcctaaa 71335
>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete sequence Length = 179198 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atagttaattttctcctaaa 61 |||||||||||||||||||| Sbjct: 125158 atagttaattttctcctaaa 125177
>emb|CT030723.18| Mouse DNA sequence from clone RP23-33L24 on chromosome 16, complete sequence Length = 241451 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 ttattctcttgtttaataag 674 |||||||||||||||||||| Sbjct: 95384 ttattctcttgtttaataag 95403
>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence Length = 189515 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ccagggaggaacataccaac 170 |||||||||||||||||||| Sbjct: 121867 ccagggaggaacataccaac 121848
>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence Length = 205086 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 acacattacataaatacatt 26 |||||||||||||||||||| Sbjct: 48718 acacattacataaatacatt 48737
>dbj|AK114540.1| Ciona intestinalis cDNA, clone:cieg005k22, full insert sequence Length = 2560 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 tttattctcttgtttaataa 673 |||||||||||||||||||| Sbjct: 2517 tttattctcttgtttaataa 2536
>emb|AL837516.14| Mouse DNA sequence from clone RP23-234L8 on chromosome 2, complete sequence Length = 202046 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aatgacacattacataaata 22 |||||||||||||||||||| Sbjct: 162929 aatgacacattacataaata 162910
>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence Length = 127190 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gaaacattttcagatgatga 264 |||||||||||||||||||| Sbjct: 54557 gaaacattttcagatgatga 54576
>gb|AC154415.3| Mus musculus BAC clone RP24-232A21 from chromosome 16, complete sequence Length = 177893 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 ttattctcttgtttaataag 674 |||||||||||||||||||| Sbjct: 112084 ttattctcttgtttaataag 112103
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 catttgttccaagatttccg 483 |||||||||||||||||||| Sbjct: 893456 catttgttccaagatttccg 893437
>gb|L41560.1|HUMPCBD Homo sapiens (clones HGPCD2 and HGPCD15) pterin-4a-carbinolamine dehydratase (PCBD) gene, complete cds Length = 12404 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 acatcaaaatagaaatccat 611 |||||||||||||||||||| Sbjct: 3379 acatcaaaatagaaatccat 3398 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,693,453 Number of Sequences: 3902068 Number of extensions: 7693453 Number of successful extensions: 163308 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162967 Number of HSP's gapped (non-prelim): 341 length of query: 722 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 699 effective length of database: 17,143,297,704 effective search space: 11983165095096 effective search space used: 11983165095096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
