>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877|
          Length = 164

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 27/112 (24%), Positives = 57/112 (50%)
 Frame = -3

Query: 721 EDGSDLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD 542
           E   D  LPI + ++ +  +    + +  PRP  +++++++   +G++++ VRI ++   
Sbjct: 24  EANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVRIVDLQEG 83

Query: 541 AYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKV 386
            +Y+ L   +       I    +PSD++ IA R  VPI V + +    GL +
Sbjct: 84  TFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129

>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing|
           protein 1 (GTF2I repeat domain-containing protein 1)
           (Muscle TFII-I repeat domain-containing protein 1)
           (General transcription factor III) (Slow-muscle-fiber
           enhancer binding
          Length = 959

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 547 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 368
           +DA  SR+ +A T  E+    F+ K  +A+ I +  +VP    KRI  N G  +I+  P 
Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748

Query: 367 G 365
           G
Sbjct: 749 G 749

>NALP4_HUMAN (Q96MN2) NACHT-, LRR- and PYD-containing protein 4|
           (PYRIN-containing APAF1-like protein 4) (PAAD and
           NACHT-containing protein 2) (PYRIN and NACHT-containing
           protein 2) (Ribonuclease inhibitor 2)
          Length = 994

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 80  SYVHIHIVHLDVCRSFYFLGKGHYVHPHLAL 172
           SYV +H+   + C + ++L K H  HPH A+
Sbjct: 447 SYVFLHVCIQEFCAALFYLLKSHLDHPHPAV 477

>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)|
           (Keratin-4) (K4)
          Length = 534

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = -3

Query: 625 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 452
           T +N++++ T     T    +  E + + Y S  R  L   GN++  +  +LK       
Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235

Query: 451 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVNSDQIQYARLDKPGDQ 308
            F+ K   ++NKR A  N   V++     +Y+N  +++ A++D   D+
Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLNKVELE-AKVDSLNDE 282

>ION3_CARAU (P18520) Intermediate filament protein ON3|
          Length = 520

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = -3

Query: 556 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 383
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214

Query: 382 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 281
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247

>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857|
          Length = 508

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = -3

Query: 679 TPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD-AYYSRLYLAKTGN 503
           TP  +L+AA   +   RP      +E  E   Y  RL+++ E+     Y  + Y  + G 
Sbjct: 402 TPEAVLVAAADALSAARP---GARRESLE--NYIKRLMKLEEIAKSFKYVEKAYAIQAGR 456

Query: 502 EEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 383
           E  VI    K  DA+       +  ++ + + Y   LKV+
Sbjct: 457 EIRVIVEPDKVDDALAEKLAYDISKKIEEELEYPGVLKVV 496

>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)|
           (Keratin-8) (K8)
          Length = 520

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = -3

Query: 556 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 383
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220

Query: 382 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 281
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253

>WDR67_HUMAN (Q96DN5) WD-repeat protein 67|
          Length = 1066

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 137 GKGHYVHPHLALLYRVLFVCPEHEKAISVL--SSIFITFLNSSNKHAAHQIKLLGFKARL 310
           G G Y   +   ++R L   PE+  A S L      + FLN   K+     KLL    R 
Sbjct: 421 GYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRT 480

Query: 311 VAGLVQSRVL 340
           ++ L    V+
Sbjct: 481 LSALAHWSVI 490

>ATC1_DUNBI (P54209) Cation-transporting ATPase CA1 (EC 3.6.3.-)|
          Length = 1037

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 26/104 (25%), Positives = 39/104 (37%)
 Frame = -3

Query: 676 PSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEE 497
           P ++LL  + N  +   T  N  K + ++  Y            DA   R      G  +
Sbjct: 113 PMVILLILVANATVGVVTERNAEKAIEQLKSYEA---------DDATVLR-----NGQLQ 158

Query: 496 EVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTG 365
            + S D+ P D + +A   KVP        Y   LK+ Q   TG
Sbjct: 159 LIPSADIVPGDIVELAVGNKVPADTRVSHIYTTSLKIDQSLLTG 202

>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 613

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 268 MLVAAVEERYKDAAQYRD 215
           M  AA +ERY+DAA+YRD
Sbjct: 211 MAAAAADERYEDAARYRD 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,796,254
Number of Sequences: 219361
Number of extensions: 2251767
Number of successful extensions: 6152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6151
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)