ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expr... 32 0.37
2HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expr... 30 1.1
3PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter 29 2.4
4SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocys... 29 3.1
5KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial pr... 28 5.3
6ATPG_MYCPN (Q50330) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 27 9.1

>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 271

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 241 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSP 384
           N+ F  L++ +RT V++    HP  S     AL  + G S   G  YP P
Sbjct: 56  NSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPSGFGGPLYPFP 105



to top

>HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 270

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 241 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSP 384
           N+ F  L++ +RT V++    HP  S  +  AL  + G     G  YP P
Sbjct: 55  NSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFP 104



to top

>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 271 FRTWVHQDPSCHPTLSPKADQALTGSL-GKSACSGYPSP 384
           F  +VH+DPS HPT+  +  + +  SL G       P P
Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIP 286



to top

>SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocysteine lyase)|
           (EC 4.4.1.16) (Selenocysteine reductase) (Selenocysteine
           beta-lyase) (SCL)
          Length = 410

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 24  ICTYINSDLENEVYLVALTCANHTFPSTGTSETFLLEQDQMGIQIMEHH 170
           I  +IN+  ++E+  V  T       +    ETF+ + D + I  MEHH
Sbjct: 76  IAKFINAKSDSEIIFVKGTTEGINLVANTWGETFIKKGDNIVITQMEHH 124



to top

>KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial precursor (EC|
           2.7.3.2) (U-MtCK) (Mia-CK) (Acidic-type mitochondrial
           creatine kinase)
          Length = 418

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 357 LPQRPGQRLVSLG*EGGMTRGVLMDPST 274
           L  RPG RL++L   G +T G+L+ P +
Sbjct: 9   LSARPGLRLLALAGAGSLTAGILLRPES 36



to top

>ATPG_MYCPN (Q50330) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 279

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = -1

Query: 300 RGVLMDPSTETSDKVLETIIAVLKISLFSSVCIMLV*IKQLMVSDA-P*SVFPFDLVLVR 124
           R +  D   + SD+++E       +     +CI+    K  ++  A    VFPFD+ + +
Sbjct: 134 RDLSFDYCQQVSDQIMEQF----DLHQLDRICIIYTQFKNPLIQHANSFQVFPFDVAMFK 189

Query: 123 RFHLFPLREMYDL----HR*VQPNRPRFLDLSL 37
            F+   + +  D        ++   P+F D++L
Sbjct: 190 AFNPVKMEQKLDFEPDEETIIKLISPQFFDIAL 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,834,208
Number of Sequences: 219361
Number of extensions: 1156975
Number of successful extensions: 2769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2769
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top