| Clone Name | rbaal30e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 777 bits (392), Expect = 0.0 Identities = 485/512 (94%), Gaps = 3/512 (0%) Strand = Plus / Minus Query: 29 taaatattacaatgagcttttatttttcttgctgtgtaatgtggaagtcattgctcatgg 88 |||||||||||||||| |||| |||||||||| ||| ||| ||||||||||||||||||| Sbjct: 976 taaatattacaatgagtttttgtttttcttgccgtggaatctggaagtcattgctcatgg 917 Query: 89 gaacgttttcatgcgcagacaccaaacagtacagtacagaacagaatcttcctggcgtgc 148 ||| ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct: 916 aaacattttcgtgtgcagataccaaacagtacagtacagagcagaagcttcctggcgtgc 857 Query: 149 ttctttacaaggaaaagctctcctaaatgctcccaggcatattttt-gcgatacaggcta 207 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || Sbjct: 856 ttctttacaaggaaaagctctcctaaatgctcccaggcttattttttgcgatacagactg 797 Query: 208 caaacacttttacat-ctataggatctgcctgctactcaaaagtaccgcggacacacata 266 |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 796 caaacacttttacagactataggatctgcctgctactcaaa-gtaccgcggacacacata 738 Query: 267 tttacagatccacaagtaccgggcatgggctcctgcgcctctaaaacttcagcatggcct 326 |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 737 tttacagatccacaagtaccgggcatggactcctgcatctctaaaacttcagcatggcct 678 Query: 327 ccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctggttta 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 ccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctggttta 618 Query: 387 ctatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcactgttt 446 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 617 ctatcggtaatctgtggatcttcttcctgagcatcagagctgcggcatcggtcactgttt 558 Query: 447 tatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtccttgacc 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 557 tatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtctttggcc 498 Query: 507 catgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| || |||||||||||||| Sbjct: 497 catgtgaagccctcacgtgatcgctcttgacg 466
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 646 bits (326), Expect = 0.0 Identities = 389/406 (95%), Gaps = 3/406 (0%) Strand = Plus / Plus Query: 130 cagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctcccaggcata 189 ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| || Sbjct: 35 cagaagcttccgggcgtgcttctttacaaggaaaagctctcctaaaagttcccaggctta 94 Query: 190 tttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaa 248 ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| Sbjct: 95 tttttgcgatacaggctacaa-cacttttacagactatag-atctgcctgctactcaaaa 152 Query: 249 gtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctct 308 | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 153 gcaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctct 212 Query: 309 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctatta 368 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 213 aaaacttcagcatggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacctatta 272 Query: 369 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 332 Query: 429 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 392 Query: 489 caatcttcgtccttgacccatgtgaagccctcgcgcgatcgctctt 534 ||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 393 caatcttcgtctttggcccatgtgaagccctcgcgcaatcgctctt 438
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 458
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 458
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 464
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 450
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 994 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 934 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 882
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 450
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 450
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 458
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 458
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 451
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 208 bits (105), Expect = 1e-50 Identities = 201/233 (86%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 425 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576 Query: 426 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 485 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516 Query: 486 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 |||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 463
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 194 bits (98), Expect = 2e-46 Identities = 201/234 (85%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 365 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890 Query: 366 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 424 | ||||| ||||||| ||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830 Query: 425 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 484 ||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770 Query: 485 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacg 538 ||||||||||||||| |||||||||| |||||||| || || || ||||||||| Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacg 716
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 137 bits (69), Expect = 4e-29 Identities = 169/204 (82%) Strand = Plus / Minus Query: 307 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 366 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535 Query: 367 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 426 ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475 Query: 427 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 486 || ||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| || Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415 Query: 487 tgcaatcttcgtccttgacccatg 510 | ||||||||| | |||||||| Sbjct: 414 cgatatcttcgtcttggacccatg 391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 361 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 420 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731 Query: 421 cagagctgcggcatc 435 ||||||||| ||||| Sbjct: 35111730 cagagctgccgcatc 35111716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 364 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 440 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 499 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 500 cttgac 505 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 361 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 420 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087 Query: 421 cagagctgcggcatc 435 ||||||||| ||||| Sbjct: 7086 cagagctgccgcatc 7072 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 364 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 440 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 499 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 500 cttgac 505 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 361 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 420 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894 Query: 421 cagagctgcggcatc 435 ||||||||| ||||| Sbjct: 84893 cagagctgccgcatc 84879 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 364 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 440 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 499 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 500 cttgac 505 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 361 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 420 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459 Query: 421 cagagctgcggcatc 435 ||||||||| ||||| Sbjct: 2460 cagagctgccgcatc 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 306 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 364 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 440 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 499 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 500 cttgac 505 ||||| Sbjct: 2629 tttgac 2634
>emb|AL355597.19| Human DNA sequence from clone RP11-358N3 on chromosome 10 Contains a CpG island, complete sequence Length = 89340 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 41 tgagcttttatttttcttgctgt 63 ||||||||||||||||||||||| Sbjct: 50295 tgagcttttatttttcttgctgt 50317
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 aaacacttttacatctatagga 230 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>emb|AL591718.14| Human DNA sequence from clone RP11-399A15 on chromosome 6 Contains the 5' end of HCRTR2 gene for hypocretin (orexin) receptor 2, complete sequence Length = 159698 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 ttatttttcttgctgtgtaat 68 ||||||||||||||||||||| Sbjct: 83018 ttatttttcttgctgtgtaat 82998
>emb|AL031581.1|DMC115C2 Drosophila melanogaster cosmid clone 115C2 Length = 46630 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cttcttctaaatattacaatg 42 ||||||||||||||||||||| Sbjct: 37817 cttcttctaaatattacaatg 37837
>gb|AC104602.3| Drosophila melanogaster X BAC RP98-16G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 161668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cttcttctaaatattacaatg 42 ||||||||||||||||||||| Sbjct: 146019 cttcttctaaatattacaatg 146039
>gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 of 74 of the complete sequence Length = 315092 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cttcttctaaatattacaatg 42 ||||||||||||||||||||| Sbjct: 129386 cttcttctaaatattacaatg 129406
>gb|AC102320.6| Mus musculus chromosome 1, clone RP24-459A11, complete sequence Length = 121264 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 caaacagtacagtacagaacagaa 134 |||||||||||| ||||||||||| Sbjct: 120145 caaacagtacagaacagaacagaa 120122
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tctgtggatcttcttcttga 416 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tcttcttgagcatcagagct 427 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, complete sequence Length = 162384 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gagcttttatttttcttgct 61 |||||||||||||||||||| Sbjct: 83492 gagcttttatttttcttgct 83473
>gb|AC111162.5| Homo sapiens chromosome 11, clone RP11-75L18, complete sequence Length = 119944 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 agcttttatttttcttgctgtgta 66 ||||||||||||||||| |||||| Sbjct: 1779 agcttttatttttcttgttgtgta 1802
>gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, complete sequence Length = 165287 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 agcttttatttttcttgctgtgta 66 ||||||||||||||||| |||||| Sbjct: 21322 agcttttatttttcttgttgtgta 21299
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tttgcgatacaggctacaaa 211 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gctctcctaaatgctcccag 184 |||||||||||||||||||| Sbjct: 76812 gctctcctaaatgctcccag 76793
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 322 ggcctccaacgcgcgaagaacgtcatcg 349 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 acatatttacagatccacaa 281 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 acatatttacagatccacaa 281 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103
>emb|Z81462.1|CEC04H5 Caenorhabditis elegans Cosmid C04H5, complete sequence Length = 27955 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gcttttatttttcttgctgt 63 |||||||||||||||||||| Sbjct: 15907 gcttttatttttcttgctgt 15926
>gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, complete sequence Length = 211188 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 caaacagtacagtacagaacagaa 134 |||||||||||| ||||||||||| Sbjct: 36506 caaacagtacagaacagaacagaa 36483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,282,143 Number of Sequences: 3902068 Number of extensions: 5282143 Number of successful extensions: 103274 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103173 Number of HSP's gapped (non-prelim): 93 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)