ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YO092_YEAST (Q12010) Uncharacterized protein YOL092W 52 2e-06
2STM1_SCHPO (Q10482) Seven transmembrane protein 1 42 0.002
3YBZ7_YEAST (P38279) Hypothetical 33.5 kDa protein in MRPS9-YSW1 ... 34 0.47
4PERN_IPOBA (O04796) Neutral peroxidase precursor (EC 1.11.1.7) (... 30 6.9
5NODU_AZOCA (Q07759) Nodulation protein U (EC 2.1.3.-) 30 9.0

>YO092_YEAST (Q12010) Uncharacterized protein YOL092W|
          Length = 308

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 35/59 (59%)
 Frame = -1

Query: 683 LMFTFALVGNTTYVGSILVNSLDWARLRPNLPWLVDAGGCVLLDSFIIFQFLYFHYRKQ 507
           L F FA +GNTT++ S++V SLDW  L  N  WLV + G + +D  I  QF  +   K+
Sbjct: 246 LFFLFACLGNTTFIFSVIVISLDWKYLIMNASWLVGSIGTLFMDFVIFSQFFIYKRNKK 304



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>STM1_SCHPO (Q10482) Seven transmembrane protein 1|
          Length = 271

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = -1

Query: 683 LMFTFALVGNTTYVGSILV-NSLDWARLR-PNLPWLVDAGGCVLLDSFIIFQFLYF--HY 516
           + F  A VGNT+Y  SILV  + D+      NLPW++ A   + LD +I +QF+ +  HY
Sbjct: 212 IFFVLASVGNTSYAFSILVFPASDYLNYTYANLPWILGAFSTIFLDIYIFYQFIKYRNHY 271



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>YBZ7_YEAST (P38279) Hypothetical 33.5 kDa protein in MRPS9-YSW1 intergenic|
           region
          Length = 296

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 683 LMFTFALVGNTTYVGSILVNSLDWARLRPNLPWLVDAGGCVLLDSFIIFQFLYF 522
           L F FA +GNT+++ S+L  S           WL+ + G +L+D  +  QF  +
Sbjct: 242 LFFLFACLGNTSFIISVLSAS-----------WLIGSAGTLLMDFTVFIQFFLY 284



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>PERN_IPOBA (O04796) Neutral peroxidase precursor (EC 1.11.1.7) (SwPN1)|
          Length = 348

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 358 PCLCSSARGVAIVQLSKKNAQSPCRCSPIS 447
           P   +S RG +++  +K+NAQ+ C  +P+S
Sbjct: 126 PANSNSVRGFSVIDQAKRNAQTKCADTPVS 155



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>NODU_AZOCA (Q07759) Nodulation protein U (EC 2.1.3.-)|
          Length = 560

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 35  EHLDKIGLVPHKKNLQMSNAEPYLESGW 118
           EH D+I L  H+   Q S+ + Y+  GW
Sbjct: 41  EHTDEIALALHRSGFQPSDIDEYIIDGW 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,368,872
Number of Sequences: 219361
Number of extensions: 2189267
Number of successful extensions: 4491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4490
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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