ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
2gb|AY107363.1| Zea mays PCO107756 mRNA sequence 98 5e-17
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
4dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
5gb|AC149134.2| Medicago truncatula, complete sequence 56 2e-04
6ref|NM_180009.1| Arabidopsis thaliana unknown protein AT2G41050 ... 52 0.002
7gb|AY133749.1| Arabidopsis thaliana clone U19895 unknown protein... 52 0.002
8gb|AY080611.1| Arabidopsis thaliana unknown protein (At2g41050) ... 52 0.002
9gb|AC004261.3| Arabidopsis thaliana chromosome 2 clone T3K9 map ... 52 0.002
10gb|AF386526.1| Shigella flexneri 2a str. 301 virulence plasmid p... 42 2.4
11gb|AC146147.3| Pan troglodytes BAC clone RP43-2J16 from 7, compl... 42 2.4
12gb|AY359242.1| Pseudendoclonium akinetum mitochondrion, complete... 42 2.4
13emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on... 42 2.4
14emb|Z81528.1|CEF35E2 Caenorhabditis elegans Cosmid F35E2, comple... 42 2.4
15gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, comple... 42 2.4
16gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete s... 42 2.4
17gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete se... 42 2.4
18gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha pol... 42 2.4
19emb|AL391753.1|SFPWR100 Shigella flexneri virulence plasmid pWR1... 42 2.4
20gb|BC105473.1| Bos taurus cDNA clone IMAGE:7988010, with apparen... 42 2.4
21gb|AC034303.14| Homo sapiens chromosome 17, clone RP11-648P8, co... 42 2.4
22gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, comp... 42 2.4
23gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, r... 42 2.4
24gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid... 42 2.4
25gb|AC006476.3|AC006476 Homo sapiens PAC clone RP4-764O12 from 7,... 42 2.4
26gb|AC002347.3| Homo sapiens chromosome 17, clone CTC-297N7, comp... 42 2.4
27gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell... 42 2.4
28gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55... 42 2.4
29dbj|AB078681.2| Human immunodeficiency virus 1 gene for gag-pol ... 42 2.4
30gb|AY879342.1| Shigella flexneri plasmid pSF5, complete sequence 42 2.4
31emb|BX294124.8| Mouse DNA sequence from clone RP23-80H12 on chro... 42 2.4
32gb|AF027390.1|AF027390 Homo sapiens 7q telomere, complete sequence 42 2.4
33emb|AL672101.22| Mouse DNA sequence from clone RP23-170E12 on ch... 42 2.4
34emb|AL928726.5| Mouse DNA sequence from clone RP23-397A11 on chr... 42 2.4
35gb|AF427209.1| HIV-1 isolate bnu34 from USA pol protein (pol) ge... 40 9.3
36gb|AY660308.1| HIV-1 clone 4_M84_CD4memory_pt20 from France reve... 40 9.3
37gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 40 9.3
38gb|AY362469.1| Valeriana officinalis NADH dehydrogenase subunit ... 40 9.3
39gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 9.3
40emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 ... 40 9.3
41gb|AC147434.12| Medicago truncatula clone mth2-28h7, complete se... 40 9.3
42gb|BC109733.1| Bos taurus carnitine O-octanoyltransferase, mRNA ... 40 9.3
43emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on ch... 40 9.3
44emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chrom... 40 9.3
45gb|AC091026.6| Homo sapiens chromosome 8, clone CTD-2584D11, com... 40 9.3
46gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, comp... 40 9.3
47emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10,... 40 9.3
48emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, ... 40 9.3
49emb|CR626937.1| Human DNA sequence from clone XX-NCIH2171_3C16, ... 40 9.3
50gb|AC182359.3| Spermophilus tridecemlineatus clone VMRC20-329J14... 40 9.3
51dbj|AK021746.1| Homo sapiens cDNA FLJ11684 fis, clone HEMBA1004909 40 9.3
52gb|AC109351.3| Homo sapiens BAC clone RP11-417M17 from 4, comple... 40 9.3
53gb|AC157216.2| Pan troglodytes BAC clone CH251-66E23 from chromo... 40 9.3
54gb|AC021355.8| Homo sapiens, clone RP11-24P4, complete sequence 40 9.3
55gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 40 9.3
56gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, comple... 40 9.3
57gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2... 40 9.3
58dbj|AB127931.1| Sphingomonas sp. A1 nadK gene for ATP-NAD kinase... 40 9.3
59gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 40 9.3
60emb|AL772346.5| Mouse DNA sequence from clone RP23-413E7 on chro... 40 9.3 
>dbj|AK069474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E21, full
            insert sequence
          Length = 1825

 Score =  141 bits (71), Expect = 3e-30
 Identities = 149/175 (85%)
 Strand = Plus / Minus

                                                                        
Query: 509  gcttccggtaatgaaaataaaggaactgaaaaataatgaaagaatcaagcaaaacacatc 568
            ||||||| ||||| |||||||| ||||||| |||||| |||| |||||||||||||||||
Sbjct: 1349 gcttccgataatggaaataaagaaactgaagaataataaaagtatcaagcaaaacacatc 1290

                                                                        
Query: 569  ctccagcatctacaagccacggcagatttggtctaagtcttgcccagtccaaactattca 628
            |||||||||||||||||||||| ||||| ||  ||||| ||| ||| ||||  || ||||
Sbjct: 1289 ctccagcatctacaagccacggtagattcggcttaagttttgaccaatccatgcttttca 1230

                                                                   
Query: 629  caaggatactccctacatatgtcgtattccccaccaaagcaaaggtaaacattag 683
            |||| ||||| || || ||||||  ||| ||||| || ||||| |||||||||||
Sbjct: 1229 caagtatacttccaacgtatgtcacatttcccactaatgcaaaagtaaacattag 1175
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>gb|AY107363.1| Zea mays PCO107756 mRNA sequence
          Length = 494

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 505 ctttgcttccggtaatgaaaataaaggaactgaaaaataatgaaagaatcaagcaaaaca 564
           ||||||||||| ||||| |||||||||||||||| ||| || |||||||| |||||||||
Sbjct: 411 ctttgcttccgataatggaaataaaggaactgaagaatgataaaagaatccagcaaaaca 470

                            
Query: 565 catcctccagcatctac 581
           ||||||||||| |||||
Sbjct: 471 catcctccagcgtctac 487
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                           
Query: 547     aaagaatcaagcaaaacacatcctccagcatctacaagccacggcagatttggtctaagt 606
               |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||
Sbjct: 9134511 aaagtatcaagcaaaacacatcctccagcatctacaagccacggtagattcggcttaagt 9134570

                                               
Query: 607     cttgcccagtccaaactattcacaaggatact 638
                ||| ||| ||||  || |||||||| |||||
Sbjct: 9134571 tttgaccaatccatgcttttcacaagtatact 9134602
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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0011D01
          Length = 168655

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 547   aaagaatcaagcaaaacacatcctccagcatctacaagccacggcagatttggtctaagt 606
             |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||
Sbjct: 34893 aaagtatcaagcaaaacacatcctccagcatctacaagccacggtagattcggcttaagt 34952

                                             
Query: 607   cttgcccagtccaaactattcacaaggatact 638
              ||| ||| ||||  || |||||||| |||||
Sbjct: 34953 tttgaccaatccatgcttttcacaagtatact 34984
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>gb|AC149134.2| Medicago truncatula, complete sequence
          Length = 133336

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 562   acacatcctccagcatctacaagccacggcagatttggtc 601
             |||||||||||||||||||| ||||| || ||||||||||
Sbjct: 37775 acacatcctccagcatctaccagccatggtagatttggtc 37736
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>ref|NM_180009.1| Arabidopsis thaliana unknown protein AT2G41050 mRNA, complete cds
          Length = 1545

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 551  aatcaagcaaaacacatcctccagcatctacaagccacggcagatt 596
            ||||||||| |||||||||||| ||||| |||||||| || |||||
Sbjct: 1258 aatcaagcacaacacatcctcctgcatcaacaagccatggtagatt 1213
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>gb|AY133749.1| Arabidopsis thaliana clone U19895 unknown protein (At2g41050) mRNA,
            complete cds
          Length = 1162

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 551  aatcaagcaaaacacatcctccagcatctacaagccacggcagatt 596
            ||||||||| |||||||||||| ||||| |||||||| || |||||
Sbjct: 1042 aatcaagcacaacacatcctcctgcatcaacaagccatggtagatt 997
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>gb|AY080611.1| Arabidopsis thaliana unknown protein (At2g41050) mRNA, complete cds
          Length = 1561

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 551  aatcaagcaaaacacatcctccagcatctacaagccacggcagatt 596
            ||||||||| |||||||||||| ||||| |||||||| || |||||
Sbjct: 1258 aatcaagcacaacacatcctcctgcatcaacaagccatggtagatt 1213
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>gb|AC004261.3| Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete
             sequence
          Length = 91539

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 551   aatcaagcaaaacacatcctccagcatctacaagccacggcagatt 596
             ||||||||| |||||||||||| ||||| |||||||| || |||||
Sbjct: 62144 aatcaagcacaacacatcctcctgcatcaacaagccatggtagatt 62099
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>gb|AF386526.1| Shigella flexneri 2a str. 301 virulence plasmid pCP301, complete
             sequence
          Length = 221618

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 517   taatgaaaataaaggaactgaaaaataat 545
             ||||||||||||||||| |||||||||||
Sbjct: 18972 taatgaaaataaaggaa-tgaaaaataat 18999
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>gb|AC146147.3| Pan troglodytes BAC clone RP43-2J16 from 7, complete sequence
          Length = 167352

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 525   ataaaggaactgaaaaataatgaaa 549
             |||||| ||||||||||||||||||
Sbjct: 24667 ataaagtaactgaaaaataatgaaa 24643
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>gb|AY359242.1| Pseudendoclonium akinetum mitochondrion, complete genome
          Length = 95880

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 520   tgaaaataaaggaactgaaaa 540
             |||||||||||||||||||||
Sbjct: 53988 tgaaaataaaggaactgaaaa 54008
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>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete
             sequence
          Length = 100991

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   aaaatagagataccatgaaga 204
             |||||||||||||||||||||
Sbjct: 74383 aaaatagagataccatgaaga 74363
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>emb|Z81528.1|CEF35E2 Caenorhabditis elegans Cosmid F35E2, complete sequence
          Length = 37439

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 341   gcaaattaagcgtgtgacctt 361
             |||||||||||||||||||||
Sbjct: 29493 gcaaattaagcgtgtgacctt 29473
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>gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, complete sequence
          Length = 177476

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 525    ataaaggaactgaaaaataatgaaa 549
              |||||| ||||||||||||||||||
Sbjct: 154319 ataaagtaactgaaaaataatgaaa 154295
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>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence
          Length = 131577

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    aaaatagagataccatgaaga 204
              |||||||||||||||||||||
Sbjct: 129344 aaaatagagataccatgaaga 129364
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>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence
          Length = 100985

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   aaaatagagataccatgaaga 204
             |||||||||||||||||||||
Sbjct: 74386 aaaatagagataccatgaaga 74366
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>gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5
             alpha-steroid delta 4-dehydrogenase alpha 1) (SRD5A1)
             gene, complete cds
          Length = 38399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   tagagtcagggtggagactgg 125
             |||||||||||||||||||||
Sbjct: 14294 tagagtcagggtggagactgg 14274
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>emb|AL391753.1|SFPWR100 Shigella flexneri virulence plasmid pWR100: from 1 to 213494
          Length = 213494

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 517   taatgaaaataaaggaactgaaaaataat 545
             ||||||||||||||||| |||||||||||
Sbjct: 21038 taatgaaaataaaggaa-tgaaaaataat 21065
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>gb|BC105473.1| Bos taurus cDNA clone IMAGE:7988010, with apparent retained intron
          Length = 2329

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 357  accttgtctctgcagttctgc 377
            |||||||||||||||||||||
Sbjct: 1245 accttgtctctgcagttctgc 1225
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>gb|AC034303.14| Homo sapiens chromosome 17, clone RP11-648P8, complete sequence
          Length = 157850

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 654   attccccaccaaagcaaaggt 674
             |||||||||||||||||||||
Sbjct: 86937 attccccaccaaagcaaaggt 86917
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>gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, complete sequence
          Length = 115396

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   tagagtcagggtggagactgg 125
             |||||||||||||||||||||
Sbjct: 73665 tagagtcagggtggagactgg 73645
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>gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
             BACR36B06, complete sequence
          Length = 183436

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 662   ccaaagcaaaggtaaacatta 682
             |||||||||||||||||||||
Sbjct: 49712 ccaaagcaaaggtaaacatta 49732
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>gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid pWR501, complete plasmid
             sequence
          Length = 221851

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 517   taatgaaaataaaggaactgaaaaataat 545
             ||||||||||||||||| |||||||||||
Sbjct: 18728 taatgaaaataaaggaa-tgaaaaataat 18755
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>gb|AC006476.3|AC006476 Homo sapiens PAC clone RP4-764O12 from 7, complete sequence
          Length = 112804

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 529   aggaactgaaaaataatgaaa 549
             |||||||||||||||||||||
Sbjct: 46774 aggaactgaaaaataatgaaa 46754
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>gb|AC002347.3| Homo sapiens chromosome 17, clone CTC-297N7, complete sequence
          Length = 134706

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 654    attccccaccaaagcaaaggt 674
              |||||||||||||||||||||
Sbjct: 116065 attccccaccaaagcaaaggt 116045
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>gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164331

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 521    gaaaataaaggaactgaaaaataat 545
              ||||||||||||| |||||||||||
Sbjct: 115743 gaaaataaaggaaatgaaaaataat 115767
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>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete
              sequence
          Length = 265413

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 662    ccaaagcaaaggtaaacatta 682
              |||||||||||||||||||||
Sbjct: 247699 ccaaagcaaaggtaaacatta 247719
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>dbj|AB078681.2| Human immunodeficiency virus 1 gene for gag-pol polyprotein, gag-RT
            region, isolate:HH043
          Length = 2624

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 523  aaataaaggaactgaaaaata 543
            |||||||||||||||||||||
Sbjct: 2111 aaataaaggaactgaaaaata 2091
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>gb|AY879342.1| Shigella flexneri plasmid pSF5, complete sequence
          Length = 136694

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 517   taatgaaaataaaggaactgaaaaataat 545
             ||||||||||||||||| |||||||||||
Sbjct: 18729 taatgaaaataaaggaa-tgaaaaataat 18756
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>emb|BX294124.8| Mouse DNA sequence from clone RP23-80H12 on chromosome X, complete
              sequence
          Length = 181854

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     cacttggataaaattgggtta 58
              |||||||||||||||||||||
Sbjct: 165314 cacttggataaaattgggtta 165334
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>gb|AF027390.1|AF027390 Homo sapiens 7q telomere, complete sequence
          Length = 225432

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 529   aggaactgaaaaataatgaaa 549
             |||||||||||||||||||||
Sbjct: 71411 aggaactgaaaaataatgaaa 71391
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>emb|AL672101.22| Mouse DNA sequence from clone RP23-170E12 on chromosome X, complete
             sequence
          Length = 159735

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 546   gaaagaatcaagcaaaacaca 566
             |||||||||||||||||||||
Sbjct: 84073 gaaagaatcaagcaaaacaca 84053
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>emb|AL928726.5| Mouse DNA sequence from clone RP23-397A11 on chromosome 2, complete
             sequence
          Length = 120515

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 523   aaataaaggaactgaaaaata 543
             |||||||||||||||||||||
Sbjct: 55317 aaataaaggaactgaaaaata 55297
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>gb|AF427209.1| HIV-1 isolate bnu34 from USA pol protein (pol) gene, partial cds
          Length = 993

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 518 aatgaaaataaaggaactga 537
           ||||||||||||||||||||
Sbjct: 903 aatgaaaataaaggaactga 922
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>gb|AY660308.1| HIV-1 clone 4_M84_CD4memory_pt20 from France reverse transcriptase
           (pol) gene, partial cds
          Length = 582

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 522 aaaataaaggaactgaaaaa 541
           ||||||||||||||||||||
Sbjct: 529 aaaataaaggaactgaaaaa 548
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>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete
           sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  aatgagtaatgcagaaccat 101
           ||||||||||||||||||||
Sbjct: 178 aatgagtaatgcagaaccat 159
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>gb|AY362469.1| Valeriana officinalis NADH dehydrogenase subunit F-like (ndhF) gene,
            partial sequence; chloroplast
          Length = 1995

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 442  atatctaacttcgttccctg 461
            ||||||||||||||||||||
Sbjct: 1687 atatctaacttcgttccctg 1668
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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gctcatgtgatgaacacttg 43
             ||||||||||||||||||||
Sbjct: 76389 gctcatgtgatgaacacttg 76408
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>emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 in linkage group 12,
              complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    agaatcaagcaaaacacatc 568
              ||||||||||||||||||||
Sbjct: 114937 agaatcaagcaaaacacatc 114918



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    agaatcaagcaaaacacatc 568
              ||||||||||||||||||||
Sbjct: 114854 agaatcaagcaaaacacatc 114835
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>gb|AC147434.12| Medicago truncatula clone mth2-28h7, complete sequence
          Length = 127300

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 544   atgaaagaatcaagcaaaac 563
             ||||||||||||||||||||
Sbjct: 22397 atgaaagaatcaagcaaaac 22378
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>gb|BC109733.1| Bos taurus carnitine O-octanoyltransferase, mRNA (cDNA clone
           IMAGE:8060594), complete cds
          Length = 1189

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 656 tccccaccaaagcaaaggta 675
           ||||||||||||||||||||
Sbjct: 160 tccccaccaaagcaaaggta 141
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>emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on chromosome 20 Contains the
             MRPS16P gene for mitochondrial ribosomal protein S16
             pseudogene, complete sequence
          Length = 94387

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tgcagaaccatatttagagt 110
             ||||||||||||||||||||
Sbjct: 62766 tgcagaaccatatttagagt 62747
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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   ccttgtctctgcagttctgc 377
             ||||||||||||||||||||
Sbjct: 21275 ccttgtctctgcagttctgc 21294
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>gb|AC091026.6| Homo sapiens chromosome 8, clone CTD-2584D11, complete sequence
          Length = 81523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 538   aaaataatgaaagaatcaagcaaa 561
             |||||||||||||||||| |||||
Sbjct: 51361 aaaataatgaaagaatcatgcaaa 51384
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>gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, complete sequence
          Length = 187047

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagctcatgtgatgaacact 41
             ||||||||||||||||||||
Sbjct: 68901 cagctcatgtgatgaacact 68882
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>emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10, complete sequence
          Length = 116906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   cagctcatgtgatgaacact 41
            ||||||||||||||||||||
Sbjct: 1669 cagctcatgtgatgaacact 1688
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>emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagctcatgtgatgaacact 41
             ||||||||||||||||||||
Sbjct: 93613 cagctcatgtgatgaacact 93594
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>emb|CR626937.1| Human DNA sequence from clone XX-NCIH2171_3C16, complete sequence
          Length = 110843

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagctcatgtgatgaacact 41
             ||||||||||||||||||||
Sbjct: 31548 cagctcatgtgatgaacact 31529
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>gb|AC182359.3| Spermophilus tridecemlineatus clone VMRC20-329J14, complete sequence
          Length = 154296

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    aaaaataatgaaagaatcaa 556
              ||||||||||||||||||||
Sbjct: 130319 aaaaataatgaaagaatcaa 130300
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>dbj|AK021746.1| Homo sapiens cDNA FLJ11684 fis, clone HEMBA1004909
          Length = 1658

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  aaaataaaggaactgaaaaa 541
            ||||||||||||||||||||
Sbjct: 1232 aaaataaaggaactgaaaaa 1213
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>gb|AC109351.3| Homo sapiens BAC clone RP11-417M17 from 4, complete sequence
          Length = 133157

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   aatgaaagaatcaagcaaaa 562
             ||||||||||||||||||||
Sbjct: 55113 aatgaaagaatcaagcaaaa 55132
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>gb|AC157216.2| Pan troglodytes BAC clone CH251-66E23 from chromosome unknown, complete
             sequence
          Length = 165669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 537   aaaaataatgaaagaatcaagcaa 560
             |||||||||||| |||||||||||
Sbjct: 63056 aaaaataatgaatgaatcaagcaa 63033
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>gb|AC021355.8| Homo sapiens, clone RP11-24P4, complete sequence
          Length = 154561

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 538   aaaataatgaaagaatcaagcaaa 561
             |||||||||||||||||| |||||
Sbjct: 13279 aaaataatgaaagaatcatgcaaa 13302
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>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 204318

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aatgagtaatgcagaaccat 101
             ||||||||||||||||||||
Sbjct: 99958 aatgagtaatgcagaaccat 99977
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>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence
          Length = 157544

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   tgaaaataaaggaactgaaaaata 543
             |||||||||||||| |||||||||
Sbjct: 86013 tgaaaataaaggaattgaaaaata 85990
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>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence
          Length = 230827

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     tgcagaaccatatttagagt 110
              ||||||||||||||||||||
Sbjct: 201898 tgcagaaccatatttagagt 201879
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>dbj|AB127931.1| Sphingomonas sp. A1 nadK gene for ATP-NAD kinase, complete cds
          Length = 897

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 ccgacgacaatggccagatc 167
           ||||||||||||||||||||
Sbjct: 227 ccgacgacaatggccagatc 208
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>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aatgagtaatgcagaaccat 101
             ||||||||||||||||||||
Sbjct: 68580 aatgagtaatgcagaaccat 68599
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>emb|AL772346.5| Mouse DNA sequence from clone RP23-413E7 on chromosome 4, complete
              sequence
          Length = 189115

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    ctgcatctatccttaacaaa 301
              ||||||||||||||||||||
Sbjct: 143483 ctgcatctatccttaacaaa 143464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,778,889
Number of Sequences: 3902068
Number of extensions: 6778889
Number of successful extensions: 160277
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160130
Number of HSP's gapped (non-prelim): 151
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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