ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30c02 |
|---|---|
| Clone Library Name | barley_pub |
>H5_ANSAN (P02258) Histone H5| Length = 193 Score = 35.4 bits (80), Expect = 0.13 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%) Frame = -2 Query: 529 RAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAIS-------------GDTQPKKRG 389 + +K K + RK + + S PKK RPRK R+ + PKK Sbjct: 98 KGDKAKRSPAGRKKKKKAARKSTSPKKAARPRKARSPAKKPKAAARKARKKSRASPKKAK 157 Query: 388 RPRKDRAISGDTQPKKKGQASK 323 +P+ +A S T KK + SK Sbjct: 158 KPKTVKAKSLKTSKPKKARRSK 179
>BAR2_CHITE (P02851) Balbiani ring protein 2 (Giant secretory protein I-B)| (GSP-IB) (Fragment) Length = 210 Score = 35.0 bits (79), Expect = 0.17 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = -2 Query: 505 SSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQAS 326 +SKR T KPS +P K +P K S ++P K +P K S ++P+K G A Sbjct: 50 NSKRCTCTSVGKPS-KPSKHSKPSKHSKPSKHSKPSKHSKPSKHSKPSKHSKPEKCGSAM 108 Query: 325 K 323 K Sbjct: 109 K 109 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -2 Query: 505 SSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQAS 326 +SKR T KPS +P K +P K S ++P K +P K ++P+K G A Sbjct: 124 NSKRCTCTSVGKPS-KPSKHSKPSKHSKPSKHSKPSKHSKPSK------HSKPEKCGSAM 176 Query: 325 K 323 K Sbjct: 177 K 177
>CPD1_DROME (P22058) Chromosomal protein D1| Length = 355 Score = 34.7 bits (78), Expect = 0.22 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -2 Query: 454 KKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQ 332 KKRGRP K++ SG +RGRP K I D P+ +G+ Sbjct: 34 KKRGRPAKNKGSSGG--GGQRGRPPKASKIQNDEDPEDEGE 72 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 360 VTLNLKKRGRPRKDRAISGDTQPKKRGRPPKEKNI 256 ++ +KKRGRP K++ SG +RGRPPK I Sbjct: 29 ISPGIKKRGRPAKNKGSSGG--GGQRGRPPKASKI 61 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 9/48 (18%) Frame = -3 Query: 360 VTLNLKKRGR----PRKDRAI--SGDTQP---KKRGRPPKEKNISESS 244 V LN+ + GR P+K RA+ +GD +P KKRGRPP+ K+ S S Sbjct: 165 VNLNISRTGRGLGRPKK-RAVESNGDGEPQVPKKRGRPPQNKSGSGGS 211
>AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment)| Length = 448 Score = 34.3 bits (77), Expect = 0.28 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 13/52 (25%) Frame = -3 Query: 345 KKRGRPRKDRA-------------ISGDTQPKKRGRPPKEKNISESSVHKRN 229 KKRGRP+K + + D PKKRGRPPK K S S+ N Sbjct: 209 KKRGRPKKPKDENESDYNNTSFSDSNTDGTPKKRGRPPKAKGESPSASPTHN 260 Score = 32.0 bits (71), Expect = 1.4 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 16/58 (27%) Frame = -2 Query: 472 KPSDQP---KKRGRPRKDRA-------------ISGDTQPKKRGRPRKDRAISGDTQP 347 KP QP KKRGRP+K + + D PKKRGRP K + S P Sbjct: 200 KPVPQPGSNKKRGRPKKPKDENESDYNNTSFSDSNTDGTPKKRGRPPKAKGESPSASP 257
>HMGA2_HUMAN (P52926) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 109 Score = 33.9 bits (76), Expect = 0.37 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = -2 Query: 469 PSDQPKKRGRPRK-DRAISGDTQPKK-RGRPRKDRAISGDTQPKKKGQAS 326 P+ Q + RGRPRK + +G+ PK+ RGRP+ + S +KK +A+ Sbjct: 22 PAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEAT 71
>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1| light chain LC1] Length = 2468 Score = 33.5 bits (75), Expect = 0.48 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = -2 Query: 529 RAEKLKMQSSKRKT--EDVCVKPSDQPKKRGRPRKDRAISGDTQP-KKRGRPRKD 374 +A +K +++K KT ++ VKP D+ +++ +P+K+ A D P KK +P+K+ Sbjct: 624 QATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKE 678
>H5_CAIMO (P06513) Histone H5| Length = 193 Score = 33.5 bits (75), Expect = 0.48 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%) Frame = -2 Query: 529 RAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAIS-------------GDTQPKKRG 389 + +K K + RK + + S P+K RPRK R+ + PKK Sbjct: 98 KGDKAKKSPAGRKKKKKAARRSTSPRKAARPRKARSPAKKPKAAARKARKKSRASPKKAK 157 Query: 388 RPRKDRAISGDTQPKKKGQASK 323 +P+ +A S T KK + SK Sbjct: 158 KPKTVKAKSLKTSKVKKAKRSK 179
>YM8H_YEAST (Q03525) Uncharacterized protein YMR269W| Length = 211 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Frame = -2 Query: 526 AEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPK-----------KRGRPR 380 A K + +R+ ED D KR + +KD+ S D++ K K+G+ Sbjct: 122 ASSSKGKKRRRRDED------DNKVKRKKLKKDKKTSNDSESKKKKKKKSKKESKKGKKS 175 Query: 379 KDRAISGDTQPKKKGQASK 323 K + GD KK + SK Sbjct: 176 KHSSDEGDKSKHKKSKKSK 194 Score = 28.1 bits (61), Expect(2) = 0.61 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -2 Query: 532 VRAEKLK---MQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAIS 362 V+ E LK K++ V + K + R R+D D KR + +KD+ S Sbjct: 97 VKGEGLKGTITNLGKKEEASFVVSSASSSKGKKRRRRDE----DDNKVKRKKLKKDKKTS 152 Query: 361 GDTQPKKK 338 D++ KKK Sbjct: 153 NDSESKKK 160 Score = 23.9 bits (50), Expect(2) = 0.61 Identities = 11/42 (26%), Positives = 19/42 (45%) Frame = -3 Query: 342 KRGRPRKDRAISGDTQPKKRGRPPKEKNISESSVHKRNAETV 217 K+G+ K + GD K+ + K+ ESS + E + Sbjct: 170 KKGKKSKHSSDEGDKSKHKKSKKSKKHKKEESSARRDRKEHI 211
>VPM_BPP2 (P25476) Terminase, endonuclease subunit (GpM)| Length = 247 Score = 32.7 bits (73), Expect = 0.82 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Frame = -2 Query: 541 AETVRAEKLKMQSSKRKT-----EDVCVKPSDQPKKRGR-PRKDRAISGDTQPKKRGRPR 380 A RA +L Q+ +K ++ KP QPK R PRK R+++ P KRGRP+ Sbjct: 188 AHLQRATQLDCQAGVKKEIERLERELKPKPEPQPKAATRAPRKTRSVT----PAKRGRPK 243 Query: 379 K 377 K Sbjct: 244 K 244
>SWI5_YEAST (P08153) Transcriptional factor SWI5| Length = 709 Score = 32.7 bits (73), Expect = 0.82 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = -2 Query: 505 SSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKK 395 S +K E+V +K S P+KRGRPRKD S + P K Sbjct: 633 SGGKKYENVVIKRS--PRKRGRPRKDGTSSVSSSPIK 667
>DBP3_CANGA (Q6FS54) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)| Length = 540 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -2 Query: 508 QSSKRK-TEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQ 332 +S KRK T+DV +K +++ K+ + KD+ D + KK + +K++ + KK + Sbjct: 5 ESKKRKLTDDVAIKQNEKKIKKDKKVKDKKDKKDKKDKKDKKEKKEKKEKKEKNDKKDKK 64 Query: 331 ASK 323 K Sbjct: 65 DKK 67
>HMGA2_MOUSE (P52927) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 108 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -3 Query: 339 RGRPRKDRAI-SGDTQPKK-RGRPPKEKNISESSVHKRNAETV 217 RGRPRK + + + PK+ RGRP KN S S ++ AET+ Sbjct: 29 RGRPRKQQQEPTCEPSPKRPRGRPKGSKNKSPSKAAQKKAETI 71
>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4| Length = 972 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 5/39 (12%) Frame = -3 Query: 345 KKRGRPRK--DRAISGDTQP---KKRGRPPKEKNISESS 244 ++RGRPRK + I ++P +KRGRPPK K+ S S+ Sbjct: 101 RRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPST 139 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Frame = -2 Query: 466 SDQPKKRGRPRK--DRAISGDTQP---KKRGRPRKDRAISGDTQ 350 ++ P++RGRPRK + I ++P +KRGRP K ++ S T+ Sbjct: 97 NEAPRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140
>HSP1_MURBR (P83211) Sperm protamine P1 precursor| Length = 107 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -2 Query: 472 KPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQASKG 320 K + K +G+ R+ R G + KK+G+ R+ R G K+KG+ KG Sbjct: 47 KAKGKGKGKGKRRRRRKGKGKGKGKKKGKGRRRRCRRGRGCKKRKGKKGKG 97
>CU070_MOUSE (P58468) Protein C21orf70 homolog| Length = 219 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -3 Query: 465 VISLKKGAGLERIELYQVTLNLKKGAGLERIELYQVTLNLKKRGRPRKDRAISGDTQPKK 286 V+SLK+GA + I + L L++ L++IE ++ + R RK + GD P + Sbjct: 77 VVSLKRGAEPKAILPKKEKLKLRRERWLQKIEAIKLAEQKLREERKRKAMVVVGDLHPLR 136 Query: 285 RGRP 274 P Sbjct: 137 DALP 140
>CWC25_CRYNE (Q5KIP8) Pre-mRNA-splicing factor CWC25| Length = 434 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -2 Query: 529 RAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPR-KDRAISGDTQPKKRGRPRKDRAISGDT 353 RAEK + + SK + D PSD R R +D S D + ++ R R DR+ + Sbjct: 191 RAEKEERRKSKHRYHDSRSPPSDYYDDRDHRRHRDSYDSQDRENRRTYRDRSDRSRTRSE 250 Query: 352 QPKKK 338 PK++ Sbjct: 251 SPKRE 255
>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5| Length = 952 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = -2 Query: 508 QSSKRKTEDVCVKPSDQ--PKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKG 335 +SSKRK +D + Q +D SGD K+R + R+ I T KK G Sbjct: 724 ESSKRKQKDTSSRKMKQLDESSADSDSEDDGRSGDKSTKRRDKARRSTRIGKSTPAKKVG 783 Query: 334 QASK 323 + K Sbjct: 784 KKEK 787 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDR 371 +RKT+D V+P + PKK+ R RK + + +P K P K+R Sbjct: 825 ERKTKDKDVEPEEAPKKK-RGRKKATPTEEEEPPKT-EPSKER 865
>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)| Length = 1088 Score = 31.6 bits (70), Expect = 1.8 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 3/153 (1%) Frame = -3 Query: 588 QRTHHYQGCFSRPHQMQRLSGQKN*RCRAPKEKLKMYV*NLVISLKKGAGLERIELYQVT 409 Q H ++ + GQKN ++P + LV + K+G G R Sbjct: 192 QLGHRSDDAIKNSGLVELVIGQKN-VAKSPSQ--------LVETGKRGRGRPR------- 235 Query: 408 LNLKKGAGLERIELYQVTLNLKKRGRPRKDRAISGDTQPKKRGRPPKEKNISES---SVH 238 K GLE++ + Q T K + GDT + RGRP K +N S +++ Sbjct: 236 ---KVQTGLEQLVIGQKTA--------AKSSSQLGDTGKRSRGRPRKVQNSPTSFLENIN 284 Query: 237 KRNAETVRAEKLKRESLRVQGA*PNNQSHCYNT 139 ET+ + + L +NQS YN+ Sbjct: 285 MEQKETIPEQVTQNSILESLTIPTDNQSRTYNS 317
>H5_CHICK (P02259) Histone H5| Length = 189 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%) Frame = -2 Query: 529 RAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAIS-------------GDTQPKKRG 389 +++K K K+K V+ S PKK RPRK R+ + PKK Sbjct: 97 KSDKAKRSPGKKKK---AVRRSTSPKKAARPRKARSPAKKPKATARKARKKSRASPKKAK 153 Query: 388 RPRKDRAISGDTQPKKKGQASK 323 +P+ +A S KK + SK Sbjct: 154 KPKTVKAKSRKASKAKKVKRSK 175
>HIRA_CHICK (P79987) HIRA protein (TUP1-like enhancer of split protein 1)| (CHIRA) Length = 1018 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%) Frame = -2 Query: 544 NAETVRAEKLKMQS--SKRKTEDVCVKPSDQPKK------RGRPRKDRAISGDT-QPKKR 392 N ++LK Q+ + K +D+ SD +K P++ + G+T + KK+ Sbjct: 588 NTNQTVVDRLKDQNFIKENKPKDILESSSDSEEKIPVAKPLSAPKRKLELEGETVEKKKK 647 Query: 391 GRPRKD 374 GRPRKD Sbjct: 648 GRPRKD 653
>H12_VOLCA (Q08865) Histone H1-II| Length = 240 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = -2 Query: 514 KMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPR--KDRAISGDTQPK- 344 K+ +++ KP PKK P+K A PKK G + K ++ +PK Sbjct: 91 KLSDAQKSKAKAAAKPKAAPKKAAAPKKAAAPKKAKAPKKEGEKKAVKPKSEKKAAKPKT 150 Query: 343 -KKGQASK 323 KK +A+K Sbjct: 151 EKKPKAAK 158
>DBP3_KLULA (Q6CT46) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)| Length = 504 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -2 Query: 520 KLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDR 371 K +++ KRK ED +K + KK + +KD+ D + KK + +K++ Sbjct: 3 KDELKDKKRKVEDEELKSKKKLKKDKKDKKDKKDKKDKKDKKEKKEKKEK 52
>RPOA_EUGAN (Q8SL94) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 207 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1 Query: 329 LERIELYQVTLNLKKEA---DLQKKRTYLRVVFISAMQRLSGQKN*REKACVFKGHNLTI 159 LER+++ V NLKK+ L K+ ++ + ++ + ++S N +K C K HN+ I Sbjct: 92 LERLKIKLVNKNLKKKIICITLTKENSFFKEIYKTI--KIS---NLNQKICTIKSHNVEI 146 Query: 158 NLTVTIQ 138 L + I+ Sbjct: 147 KLLLKIE 153
>BXDC1_HUMAN (Q9H7B2) Brix domain-containing protein 1| Length = 306 Score = 30.4 bits (67), Expect = 4.1 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 11/114 (9%) Frame = -3 Query: 486 KMYV*NLVISLKK-GAGLERIELYQVTLNLK---KGAGLERIELYQVTLNLKKRGRPRKD 319 K+Y + + LKK G RIEL ++ +L + L +LY++++ + K +P+K Sbjct: 192 KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKK 251 Query: 318 RAISGDTQPKKRGRPPKEK-NISE------SSVHKRNAETVRAEKLKRESLRVQ 178 + IS DT GR +K ++S+ + KR AE + E +++S R++ Sbjct: 252 KNISHDTFGTTYGRIHMQKQDLSKLQTRKMKGLKKRPAERI-TEDHEKKSKRIK 304
>YR871_MIMIV (Q5UP41) Hypothetical protein R871| Length = 561 Score = 25.4 bits (54), Expect(2) = 4.1 Identities = 19/80 (23%), Positives = 30/80 (37%) Frame = -2 Query: 595 QQSKNXXXXXXXXXXXSNAETVRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAIS 416 + SK + + R + K S +K + K P +DR+ S Sbjct: 141 KSSKKHKSSKKHKSSKHDKSSKRDKSSKRHKSHKKKDKSHKKRYRSPSSDRSLSRDRSSS 200 Query: 415 GDTQPKKRGRPRKDRAISGD 356 D KKR +DR++S D Sbjct: 201 RDRSYKKRRLYSRDRSLSRD 220 Score = 23.5 bits (49), Expect(2) = 4.1 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 324 KDRAISGDTQPKKRGRPPKEKNISESSVHKRN 229 +DR++S D + PP+++++S RN Sbjct: 219 RDRSLSRDRSLSRDRSPPRDRSLSRDRSPPRN 250
>41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)| Length = 1698 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = -2 Query: 544 NAETVRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAI 365 NA AEKLK +T+D + PK R + +D +S T+ K +G A+ Sbjct: 617 NALKETAEKLKAGQLSPRTQDKLNRGQLSPKSRAKLLQDPLLSPTTRAKLQGSAVDAAAV 676 Query: 364 SGDTQPKKKGQASKG 320 K+ +KG Sbjct: 677 PLSDSQKRSYSPTKG 691
>YQFQ_BACSU (P54474) Hypothetical protein yqfQ| Length = 247 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Frame = -2 Query: 544 NAETVRAEKLKMQS----SKRKTEDVCVKPSD-----QPKKRGRPRKDRAISGDTQPKKR 392 + ET E+ + QS S K ++ K SD +PK P+K + Q K Sbjct: 162 DTETEANEESEKQSVSEESSEKEKETETKTSDGNKKSKPKSSSLPKKSKTTDNKEQELKT 221 Query: 391 GRPRKDRAISGDTQPKKKGQASKG*SYI 308 P+K A S PK+ +SK YI Sbjct: 222 SAPKKKEAAS--PAPKRTSGSSKPRLYI 247
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = -2 Query: 508 QSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPKKKGQA 329 +SSK+ ++ V P QP G PRK+ + ++PKK+ P + SG Q K+K A Sbjct: 1293 KSSKQVSQPALVIPP-QPPTTGPPRKEVPKTTPSEPKKKQPPPPE---SGPEQSKQKKVA 1348 Query: 328 SK 323 + Sbjct: 1349 PR 1350
>H11_ARATH (P26568) Histone H1.1| Length = 274 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = -2 Query: 541 AETVRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAIS 362 A+ A K K ++K+ T KP P+ K +A+ D +PK + RP K + Sbjct: 170 AKKTIAVKPKTAAAKKVTAKAKAKPV--PRATAAATKRKAV--DAKPKAKARPAKAAKTA 225 Query: 361 GDTQPKKKGQAS 326 T P KK A+ Sbjct: 226 KVTSPAKKAVAA 237
>3F_DICDI (P13475) 3F protein precursor (Fragment)| Length = 215 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/67 (22%), Positives = 28/67 (41%) Frame = -2 Query: 523 EKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK 344 ++LK + TE+ P+ Q ++G P+ D + K P+ D + Sbjct: 118 DRLKDNADAANTENAQKSPNTQSTQKGSPKSDAKEASPKTDAKEASPKSDAKEASPKTDT 177 Query: 343 KKGQASK 323 K+G + K Sbjct: 178 KQGSSPK 184
>ORC1_YEAST (P54784) Origin recognition complex subunit 1 (Origin recognition| complex protein 120 kDa subunit) Length = 914 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = -2 Query: 532 VRAEKLKMQSSKRKTEDVCVKPS---DQPKKRGRPRK----DRAISGDTQPKKRGRPRKD 374 + A++L+ + + + ED K + + P+KRGR K D S PKKRGR KD Sbjct: 277 ISADELEEEEDEEEDEDEEEKEARHTNSPRKRGRKIKLGKDDIDASVQPPPKKRGRKPKD 336
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -3 Query: 345 KKRGRPRKDRAIS---GDTQPKKRGRPPKEKNISESSVHKRNAETVRAEKLKRES 190 + RGRPRKD A +P+ RG+ E S + ET+ ++K +S Sbjct: 35 RPRGRPRKDGASPFQRARKKPRSRGKTAVEDEDSMDGLETTETETIVETEIKEQS 89
>H12_GLYBA (P40264) Histone H1-II| Length = 232 Score = 29.6 bits (65), Expect = 6.9 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = -2 Query: 526 AEKLKMQSSKRKTEDVCVKPSDQ---PKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGD 356 A K+K +K + VKP+ + PK + P+ A +PKK +P+K A Sbjct: 159 ATKVKKPVAKSTKKQAAVKPAAKKAAPKPKAVPKPKAA-----KPKKEAKPKKAAAPKAA 213 Query: 355 TQP-KKKGQASK 323 +P +KK +A+K Sbjct: 214 KKPAQKKPKATK 225
>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog| Length = 1172 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = -2 Query: 544 NAETVRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAI 365 + E+ +EKL S K+K E + +K R + + SG + G+ R R+I Sbjct: 71 SGESNTSEKLAQTSRKKKKEKKKRRKHQHHRKTKRRHEQLSSSGSESDTEAGKDRASRSI 130 Query: 364 SGDTQPKKK 338 D + +K Sbjct: 131 RDDQKEAEK 139
>ORC2_YEAST (P32833) Origin recognition complex subunit 2 (Origin recognition| complex protein 71 kDa subunit) Length = 620 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 12/79 (15%) Frame = -2 Query: 523 EKLKMQSSKRK--TEDVCVKP---SDQPKKRGRPRK------DRAISGDTQPKKRGRPRK 377 E++ + ++RK + D +KP S P+KRGRPRK DR + + RK Sbjct: 48 ERISLVGNERKNTSPDPALKPKTPSKAPRKRGRPRKIQEELTDRIKKDEKDTISSKKKRK 107 Query: 376 -DRAISGDTQPKKKGQASK 323 D+ SG+ + K +K Sbjct: 108 LDKDTSGNVNEESKTSNNK 126
>HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62
>RL22_MYCSM (O06115) 50S ribosomal protein L22| Length = 153 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/112 (21%), Positives = 46/112 (41%) Frame = -3 Query: 507 RAPKEKLKMYV*NLVISLKKGAGLERIELYQVTLNLKKGAGLERIELYQVTLNLKKRGRP 328 +A E + + + + + GL+ L T+ +G +RI + +GR Sbjct: 48 QAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRP-------RAQGRA 100 Query: 327 RKDRAISGDTQPKKRGRPPKEKNISESSVHKRNAETVRAEKLKRESLRVQGA 172 + R + RPPK+K S +S R A+ +A K+ + +G+ Sbjct: 101 FRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGS 152
>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2129 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Frame = -2 Query: 469 PSDQPKKRGRPRKDR-----AISGDTQPKKRGRPRKDRAIS 362 P + + RGRPRK R S + + RGRPRKD S Sbjct: 1786 PGEVKRGRGRPRKQRDPVEEVKSQNPVKRGRGRPRKDSLAS 1826
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis| protein 1) (RAP-1) (Basic helix-loop-helix protein 6) (bHLH6) (AtbHLH006) (rd22BP1) Length = 623 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -3 Query: 318 RAISGDTQPKKRGRPPKEKNISESSVHKRNAETVRAEKLKRESLRVQGA*PN 163 + ++ + +PKKRGR P N E ++ AE R EKL + ++ PN Sbjct: 428 KEVAVEKRPKKRGRKP--ANGREEPLNHVEAERQRREKLNQRFYALRAVVPN 477
>GRASP_HUMAN (Q7Z6J2) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) Length = 395 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -3 Query: 315 AISGDTQPKKRGRPPKEKNISESSVHKRNAETVRAEKLKRESLRVQ 178 A+SG T P+++G + KN+S+S +R T+ E + +Q Sbjct: 72 AVSGGTLPRRKGSGFRWKNLSQSPEQQRKVLTLEKEDNQTFGFEIQ 117
>PROQ_SHIFL (Q83RJ2) ProP effector| Length = 232 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 532 VRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRA 368 V+A++ + Q+ KR+ + D P++ +PR T +K G RK RA Sbjct: 110 VQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRP------TTPRRKEGAERKPRA 158
>PROQ_ECOLI (P45577) ProP effector| Length = 232 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 532 VRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRA 368 V+A++ + Q+ KR+ + D P++ +PR T +K G RK RA Sbjct: 110 VQAQRAEQQAKKREAAATAGEKEDAPRRERKPRP------TTPRRKEGAERKPRA 158
>PROQ_ECO57 (Q8XCM4) ProP effector| Length = 232 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 532 VRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRA 368 V+A++ + Q+ KR+ + D P++ +PR T +K G RK RA Sbjct: 110 VQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRP------TTPRRKEGAERKPRA 158
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Frame = -2 Query: 544 NAETVRAEKLKMQSSKRKTEDVCVKPSDQPKKRGRPR-------KDRAISGDTQPKKRGR 386 N + + A+ KM+ + ++E K SD + R R R + R+ SGD ++R R Sbjct: 125 NEDDLMAQLEKMEG-RYESEKRLQKESDSKRNRSRSRSRSRDRKRRRSRSGDRDRRRRSR 183 Query: 385 PRKDR 371 R+DR Sbjct: 184 SREDR 188
>HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62
>HMGN2_HUMAN (P05204) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62
>HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62
>HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62
>HMGN2_BOVIN (P02313) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 499 KRKTEDVCVKPSDQPKKRGRPRKDRAISGDTQPKKRGRPRKDRAISGDTQPK-KKGQASK 323 KRK E + K + R R + PK +P+K A G+ PK KKG+A Sbjct: 2 KRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADA 61 Query: 322 G 320 G Sbjct: 62 G 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,567,550 Number of Sequences: 219361 Number of extensions: 1520307 Number of successful extensions: 5380 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 4325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5274 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
