ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC129623.4| Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BA... 40 1.7
2gb|AC091321.8| Homo sapiens, clone RP11-261I12, complete sequence 40 1.7
3emb|BX649568.15| Zebrafish DNA sequence from clone CH211-122A20 ... 40 1.7
4gb|AC136004.10| Mus musculus chromosome 7, clone RP23-235M8, com... 38 6.8
5gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, comp... 38 6.8
6gb|AC162361.7| Mus musculus chromosome 7, clone RP23-177P20, com... 38 6.8
7gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete se... 38 6.8
8ref|NM_143315.1| Drosophila melanogaster CG5612-RA (CG5612), mRNA 38 6.8
9gb|AY089668.1| Drosophila melanogaster RH40246 full insert cDNA 38 6.8
10gb|AC084852.4| Homo sapiens chromosome 18, clone CTD-2145J2, com... 38 6.8
11gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, comp... 38 6.8
12gb|AC099024.1| Drosophila melanogaster, chromosome 2R, region 52... 38 6.8
13gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52... 38 6.8
14gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-2... 38 6.8
15gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, r... 38 6.8
16gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y,... 38 6.8
17gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, comple... 38 6.8
18gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99... 38 6.8
19gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41... 38 6.8
20gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, r... 38 6.8
21gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, compl... 38 6.8

>gb|AC129623.4| Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BAC Library D) complete
             sequence
          Length = 133581

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    tatccatattgttcttcttaattt 108
             ||||||||||||||||||| ||||
Sbjct: 18972 tatccatattgttcttcttcattt 18949



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>gb|AC091321.8| Homo sapiens, clone RP11-261I12, complete sequence
          Length = 45415

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    tatccatattgttcttcttaattt 108
             ||||||||||||||||||| ||||
Sbjct: 36439 tatccatattgttcttcttcattt 36416



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>emb|BX649568.15| Zebrafish DNA sequence from clone CH211-122A20 in linkage group 18,
             complete sequence
          Length = 194885

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tctatcataatataccattc 51
             ||||||||||||||||||||
Sbjct: 39984 tctatcataatataccattc 40003



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>gb|AC136004.10| Mus musculus chromosome 7, clone RP23-235M8, complete sequence
          Length = 185174

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    ccatattgttcttcttaat 106
             |||||||||||||||||||
Sbjct: 62814 ccatattgttcttcttaat 62832



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>gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, complete sequence
          Length = 173087

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     ttcttcttaatttgcacct 114
              |||||||||||||||||||
Sbjct: 130345 ttcttcttaatttgcacct 130363



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>gb|AC162361.7| Mus musculus chromosome 7, clone RP23-177P20, complete sequence
          Length = 230870

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     ccatattgttcttcttaat 106
              |||||||||||||||||||
Sbjct: 147254 ccatattgttcttcttaat 147272



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>gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete sequence
          Length = 97953

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    caacgtgctctctatcataatat 44
             |||||| ||||||||||||||||
Sbjct: 18467 caacgtactctctatcataatat 18489



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>ref|NM_143315.1| Drosophila melanogaster CG5612-RA (CG5612), mRNA
          Length = 1505

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   ttctcactctcaccctcac 67
            |||||||||||||||||||
Sbjct: 1300 ttctcactctcaccctcac 1282



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>gb|AY089668.1| Drosophila melanogaster RH40246 full insert cDNA
          Length = 1525

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   ttctcactctcaccctcac 67
            |||||||||||||||||||
Sbjct: 1301 ttctcactctcaccctcac 1283



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>gb|AC084852.4| Homo sapiens chromosome 18, clone CTD-2145J2, complete sequence
          Length = 107640

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    atccatattgttcttctta 104
             |||||||||||||||||||
Sbjct: 19886 atccatattgttcttctta 19904



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>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 93     ttgttcttcttaatttgca 111
              |||||||||||||||||||
Sbjct: 128362 ttgttcttcttaatttgca 128344



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>gb|AC099024.1| Drosophila melanogaster, chromosome 2R, region 52X-53A, BAC clone
             BACR04J01, complete sequence
          Length = 182560

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 73    cgtatacgcaattatccatattg 95
             |||||||||||||| ||||||||
Sbjct: 14152 cgtatacgcaattagccatattg 14174



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>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone
             BACR11I22, complete sequence
          Length = 173165

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 73    cgtatacgcaattatccatattg 95
             |||||||||||||| ||||||||
Sbjct: 87828 cgtatacgcaattagccatattg 87850



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>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence
          Length = 124676

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    caacgtgctctctatcataatat 44
             |||||| ||||||||||||||||
Sbjct: 29757 caacgtactctctatcataatat 29779



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>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone
              BACR15D01, complete sequence
          Length = 180499

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     ttctcactctcaccctcac 67
              |||||||||||||||||||
Sbjct: 138201 ttctcactctcaccctcac 138219



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>gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y, complete sequence
          Length = 148058

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    ctcactctcaccctcacct 69
             |||||||||||||||||||
Sbjct: 96935 ctcactctcaccctcacct 96953



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>gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, complete sequence
          Length = 122880

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 30    tctctatcataatataccattctcact 56
             |||||||||||| ||||||||| ||||
Sbjct: 68418 tctctatcataacataccattcacact 68444



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>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the complete
              sequence
          Length = 224910

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     ttctcactctcaccctcac 67
              |||||||||||||||||||
Sbjct: 187387 ttctcactctcaccctcac 187405



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>gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41 of 73 of the complete
             sequence
          Length = 262533

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 73    cgtatacgcaattatccatattg 95
             |||||||||||||| ||||||||
Sbjct: 25720 cgtatacgcaattagccatattg 25742



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>gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, region 52C1-52C2, P1 clone
             DS08438, complete sequence
          Length = 74901

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 73    cgtatacgcaattatccatattg 95
             |||||||||||||| ||||||||
Sbjct: 28084 cgtatacgcaattagccatattg 28106



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>gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, complete sequence
          Length = 150101

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 96    ttcttcttaatttgcacct 114
             |||||||||||||||||||
Sbjct: 47055 ttcttcttaatttgcacct 47073


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 978,172
Number of Sequences: 3902068
Number of extensions: 978172
Number of successful extensions: 68546
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68506
Number of HSP's gapped (non-prelim): 40
length of query: 142
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 121
effective length of database: 17,151,101,840
effective search space: 2075283322640
effective search space used: 2075283322640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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