Clone Information

BLAST Search Result

Clone Name	rbaal30a24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	323	3e-88
2	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	321	1e-87
3	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	319	5e-87
4	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	313	2e-85
5	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	313	4e-85
6	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	312	6e-85
7	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	311	1e-84
8	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	310	2e-84
9	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	304	1e-82
10	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	238	9e-63
11	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	238	2e-62
12	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	231	1e-60
13	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	197	2e-50
14	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	185	9e-47
15	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	185	9e-47
16	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	182	8e-46
17	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	179	5e-45
18	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	176	4e-44
19	PSBO_PINPS (P81665) Oxygen-evolving enhancer protein 1 (OEE1) (3...	40	0.005
20	CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES pro...	34	0.34
21	MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog	31	2.8
22	DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta...	31	3.7
23	RIC8B_MOUSE (Q80XE1) Synembryn-B (Protein Ric-8B)	30	4.9
24	RIC8B_HUMAN (Q9NVN3) Synembryn-B (Brain synembrin) (hSyn) (Prote...	30	4.9
25	MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial pre...	30	6.3
26	METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2....	30	6.3
27	H1_EUPES (Q9M5W4) Histone H1	30	8.3
28	LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA	30	8.3

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  323 bits (828), Expect = 3e-88
 Identities = 158/173 (91%), Positives = 166/173 (95%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLDE+EGP EV +DGT+KFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLV
Sbjct: 160 KTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLV 219

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           A+GKPESFSG FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVKN S
Sbjct: 220 ASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTS 279

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           SSTG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 280 SSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  321 bits (823), Expect = 1e-87
 Identities = 157/173 (90%), Positives = 165/173 (95%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLDE+EGP EV  DGT+KFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV
Sbjct: 157 KTKLMTRLTYTLDEIEGPFEVAPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 216

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           ATGKPESFSG +LVPSYRGSSFLDPKGRGGS GYDNAVALPAGGRGDEEEL KEN+K+ S
Sbjct: 217 ATGKPESFSGSYLVPSYRGSSFLDPKGRGGSAGYDNAVALPAGGRGDEEELVKENIKDVS 276

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           SSTG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE
Sbjct: 277 SSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  319 bits (817), Expect = 5e-87
 Identities = 156/173 (90%), Positives = 164/173 (94%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLDE+EGP EV  DGT+KFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLV
Sbjct: 157 KTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLV 216

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           A+GKPESFSG FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVKN +
Sbjct: 217 ASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTA 276

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           S TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 277 SLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  313 bits (803), Expect = 2e-85
 Identities = 154/173 (89%), Positives = 165/173 (95%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKLMTRLTYTLDE+EGP EV ADG++KFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA
Sbjct: 157 TKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVA 216

Query: 473 TGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNASS 294
           +GKP+SFSG FLVPSYRGSSFLDPKGRG STGYDNAVALPAGGRGDEEEL KEN K+A+S
Sbjct: 217 SGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAAS 276

Query: 293 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 135
           S G ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES
Sbjct: 277 SKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  313 bits (801), Expect = 4e-85
 Identities = 153/174 (87%), Positives = 162/174 (93%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLDE+EGP EV  DGT+KFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLV
Sbjct: 160 KTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLV 219

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           A+GKPESFS  FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVKN +
Sbjct: 220 ASGKPESFSVDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTA 279

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 135
           S TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES
Sbjct: 280 SLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  312 bits (799), Expect = 6e-85
 Identities = 153/172 (88%), Positives = 162/172 (94%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKLMTRLTYTLDE+EGP EV +DGT+KFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA
Sbjct: 159 TKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVA 218

Query: 473 TGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNASS 294
           +GKPESFSG FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KEN KN +S
Sbjct: 219 SGKPESFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVAS 278

Query: 293 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           S G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE
Sbjct: 279 SKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330

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>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  311 bits (797), Expect = 1e-84
 Identities = 163/175 (93%), Positives = 164/175 (93%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLDEMEGPLEV    TLKFEEKDGIDYAAVTVQLPGGERV FLFTVKQLV
Sbjct: 154 KTKLMTRLTYTLDEMEGPLEVRRRRTLKFEEKDGIDYAAVTVQLPGGERVAFLFTVKQLV 213

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           ATGKPESF  PFLVPSYRGSSFLDPKGRGGSTGYDNA ALP GGRGDEEELAKENVKNAS
Sbjct: 214 ATGKPESFR-PFLVPSYRGSSFLDPKGRGGSTGYDNAGALPRGGRGDEEELAKENVKNAS 272

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 132
           SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL  +APKDVKIQGVWYAQLESN
Sbjct: 273 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  310 bits (795), Expect = 2e-84
 Identities = 150/172 (87%), Positives = 163/172 (94%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKLMTRLTYTLDE+EGP EVG+DG++KF+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A
Sbjct: 160 TKLMTRLTYTLDEIEGPFEVGSDGSVKFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLEA 219

Query: 473 TGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNASS 294
           +GKPESFSG FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL+KENVKN ++
Sbjct: 220 SGKPESFSGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELSKENVKNTAA 279

Query: 293 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E
Sbjct: 280 SVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  304 bits (779), Expect = 1e-82
 Identities = 148/172 (86%), Positives = 160/172 (93%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKLMTRLTYTLDE+EGP EV +DG++ F+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A
Sbjct: 161 TKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDA 220

Query: 473 TGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNASS 294
           +GKP+SF+G FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEEL KENVKN ++
Sbjct: 221 SGKPDSFTGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTAA 280

Query: 293 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE
Sbjct: 281 SVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score =  238 bits (608), Expect = 9e-63
 Identities = 119/173 (68%), Positives = 134/173 (77%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLD M G  +VG+DG+ + +E DGIDYAA TVQLPGGERV FLFT+KQ  
Sbjct: 121 KTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFD 180

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
             G  +   G FLVPSYRGSSFLDPKGRGGSTGYDNAVALPA  R D EEL KENVK   
Sbjct: 181 GKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITK 238

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           +  G+   SV K  P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct: 239 ALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score =  238 bits (606), Expect = 2e-62
 Identities = 118/172 (68%), Positives = 135/172 (78%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           KTKLMTRLTYTLD M G L+VG+DG+ + +E+DGIDYAA TVQLPGGERV FLFT+KQ  
Sbjct: 122 KTKLMTRLTYTLDAMSGTLKVGSDGSAELKEEDGIDYAATTVQLPGGERVAFLFTIKQFD 181

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
             G  ++  G F+VPSYRGSSFLDPKGRGGSTGYDNAVALPA  R D EEL KENVK+  
Sbjct: 182 GKGTLDNIKGDFVVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKSTK 239

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 141
           +  G+   SV K    TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL
Sbjct: 240 ALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score =  231 bits (589), Expect = 1e-60
 Identities = 113/172 (65%), Positives = 132/172 (76%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           +TKLMTRLTYTLD +   L VG DG+   +EKDG+DYAA TVQL GGERVPFLFT+K L+
Sbjct: 165 RTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLL 224

Query: 476 ATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNAS 297
           A G    F G F VPSYRG++FLDPKGRGG++GYD AVALPA   GD+EE AKEN K+ +
Sbjct: 225 AKGDAGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPAS--GDDEEYAKENSKSTA 282

Query: 296 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 141
           +S G I   V K   ETGE+ GVFES+QPSDTDLGAK PKD+K  GVWYAQ+
Sbjct: 283 ASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score =  197 bits (502), Expect = 2e-50
 Identities = 100/179 (55%), Positives = 128/179 (71%), Gaps = 8/179 (4%)
 Frame = -2

Query: 650 KLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVAT 471
           KL+TR T T+D++ G L+   D +L F EKDG+D+ A+TVQLPGGERVPFLFT+K LVA 
Sbjct: 97  KLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQ 156

Query: 470 GKP--------ESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKE 315
            +P          F G F VPSYRG++FLDPKGRG  +GYDNAVALPA  + D+E+L + 
Sbjct: 157 TQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRT 214

Query: 314 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           NVK A    G I+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+G++YA++E
Sbjct: 215 NVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  185 bits (470), Expect = 9e-47
 Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 8/180 (4%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKL+TR T +LD+++G L+V +DG+L F E+DGID+  VTVQ+ GGER+P LFTVK LVA
Sbjct: 94  TKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVA 153

Query: 473 TGKPE--------SFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAK 318
           + +P          F G F VPSYR ++FLDPKGRG ++GYD+A+ALP   +  EEELA+
Sbjct: 154 STQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELAR 210

Query: 317 ENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
            NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 211 ANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  185 bits (470), Expect = 9e-47
 Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 8/180 (4%)
 Frame = -2

Query: 653 TKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA 474
           TKL+TR T +LD+++G L+V +DG+L F E+DGID+  VTVQ+ GGER+P LFTVK LVA
Sbjct: 94  TKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVA 153

Query: 473 TGKPE--------SFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAK 318
           + +P          F G F VPSYR ++FLDPKGRG ++GYD+A+ALP   +  EEELA+
Sbjct: 154 STQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELAR 210

Query: 317 ENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
            NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 211 ANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score =  182 bits (462), Expect = 8e-46
 Identities = 97/178 (54%), Positives = 124/178 (69%), Gaps = 8/178 (4%)
 Frame = -2

Query: 650 KLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVAT 471
           KL+TR T +L+++ G + V  DG + F E+ GID+  VTVQLPGGE+VPF FT+K LV  
Sbjct: 98  KLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGK 157

Query: 470 GKPE--------SFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKE 315
            +P          F G F VPSYRG++FLDPKGRG +TGYDNAVALPA    D+E+ A  
Sbjct: 158 TEPGFSSINSSIDFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA-- 213

Query: 314 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 141
           NVK      G+I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++
Sbjct: 214 NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score =  179 bits (455), Expect = 5e-45
 Identities = 92/183 (50%), Positives = 121/183 (66%), Gaps = 8/183 (4%)
 Frame = -2

Query: 656 KTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLV 477
           K K++TR T +L+++ G + VGADGTL F+EKDGID+  +TV LPGGE VPF FTVK   
Sbjct: 96  KGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFT 155

Query: 476 ATGKP--------ESFSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELA 321
            T +P          F G F VPSYRG+ FLDPK RG  TGYDNAVALP+       +  
Sbjct: 156 GTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKF 210

Query: 320 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 141
           + N K      G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++G++Y ++
Sbjct: 211 RTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRV 270

Query: 140 ESN 132
           +++
Sbjct: 271 DTD 273

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score =  176 bits (447), Expect = 4e-44
 Identities = 95/179 (53%), Positives = 125/179 (69%), Gaps = 8/179 (4%)
 Frame = -2

Query: 650 KLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVA- 474
           K++TR T +LD++ G L + ADGT+ F EK GID+ A+TV LPGGE VPFLFTVK LVA 
Sbjct: 97  KVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVAS 156

Query: 473 TGKPES-------FSGPFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKE 315
           T +P +         G + VPSYR S+FLDPK RG +TGY++AVA+P+   GD E+L KE
Sbjct: 157 TSEPATSINTSTDLRGGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSA--GDAEDLTKE 214

Query: 314 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 138
           NVK   +  G I+L+V+K    TGEV GVF ++QPSDTD+G K   DVK+ G +Y ++E
Sbjct: 215 NVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273

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>PSBO_PINPS (P81665) Oxygen-evolving enhancer protein 1 (OEE1) (33 kDa subunit|
           of oxygen evolving system of photosystem II) (33 kDa
           thylakoid membrane protein) (Fragments)
          Length = 26

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -2

Query: 401 KGRGGSTGYDNAVALPAGGR 342
           + +GGSTGYDNAVALPAGGR
Sbjct: 7   QSKGGSTGYDNAVALPAGGR 26

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>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 94

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -2

Query: 326 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 165
           +AKE  K      G +  SV K KP+TGEVI V E       + G K P +VKI
Sbjct: 13  VAKEEEKTVG---GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60

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>MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog|
          Length = 241

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 365 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES-VQPSDTDLGA 189
           V   A G   EEE A+   K      G + L  T SKP+  EVIG FES VQ      GA
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPD--EVIGYFESFVQNDFARAGA 129

Query: 188 KAP 180
            AP
Sbjct: 130 VAP 132

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>DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta) (Adapter|
           protein containing PH domain, PTB domain and leucine
           zipper motif 2)
          Length = 662

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 347 GRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQ 213
           G+  E   + +N+KN+     NI    T S PET E+I     +Q
Sbjct: 405 GKKQESSCSSQNIKNSDIEDDNIVPKATASIPETEELIAPGTPIQ 449

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>RIC8B_MOUSE (Q80XE1) Synembryn-B (Protein Ric-8B)|
          Length = 560

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 443 FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGD-----EEELAKENVKNASSSTGNI 279
           F++   R  S L   G G + G   A  L AGGRGD     +E+   E  KNA  +   I
Sbjct: 429 FVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPNINLI 488

Query: 278 TLSVTKSKP 252
           T  + +  P
Sbjct: 489 TGHLEEPMP 497

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>RIC8B_HUMAN (Q9NVN3) Synembryn-B (Brain synembrin) (hSyn) (Protein Ric-8B)|
          Length = 536

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 443 FLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGD-----EEELAKENVKNASSSTGNI 279
           F++   R  S L   G G + G   A  L AGGRGD     +E+   E  KNA  +   I
Sbjct: 429 FVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPNINLI 488

Query: 278 TLSVTKSKP 252
           T  + +  P
Sbjct: 489 TGHLEEPMP 497

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>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1)
          Length = 373

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 215 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 84
           QP    +     KD+K++G W +Q + N S  E K  ILI C  IR
Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336

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>METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2.5.1.48) (CGS)|
           (O-succinylhomoserine (thiol)-lyase) (Fragment)
          Length = 319

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 497 FTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKGRGGSTGYD 372
           F  + + A   PES +G  +VP Y+ S++   +G G  TGY+
Sbjct: 5   FATRAIHAGQDPESVTGAVIVPIYQTSTYAQ-RGVGDHTGYE 45

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>H1_EUPES (Q9M5W4) Histone H1|
          Length = 229

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 530 QLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGS 417
           QLP   R   LF +K+LVA+GK       F +PS R +
Sbjct: 86  QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARAA 123

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>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA|
          Length = 598

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 91  HAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 270
           +A ++ IFT   +  D        W++ ++  +    V D  TL++ P   P+ G   V 
Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292

Query: 271 LRV---MLPVEEDAFFTF 315
            +V   + PV  D +  F
Sbjct: 293 PQVYAGLFPVSSDDYEAF 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,896,341
Number of Sequences: 219361
Number of extensions: 1300967
Number of successful extensions: 5300
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5281
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result