ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30a08 |
|---|---|
| Clone Library Name | barley_pub |
>SLSG2_BRAOA (P22553) S-locus-specific glycoprotein BS29-2 precursor| Length = 435 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 424 LSPSGDSAFGFRQMEGNSSSYLLAIWFNKIHEKTVVWYAKSSSDSKC 564 +SP GF + +SS + L +W+ K+ E+T VW A + C Sbjct: 49 VSPGNVLELGFFRTP-SSSRWYLGMWYKKLSERTYVWVANRDNPLSC 94
>FMT_SYNEL (Q8DHS1) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 331 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 518 SWILLNQMARRYEEELPSICRKPNAESPEGESHELVGPWG 399 +W L+ ++A + E L S R+P A +P G L+ WG Sbjct: 245 TWPLIPEVAAKLPEPLQSYVREPEAAAPPGTVLALIKGWG 284
>MYOM2_HUMAN (P54296) Myomesin-2 (M-protein) (165 kDa titin-associated protein)| (165 kDa connectin-associated protein) Length = 1465 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = -2 Query: 637 QTSSPDGLRSESSPSAVSCSTELDGTCCRSCSWRTKRQ 524 Q SS L SS S T L GT CR C+ R Q Sbjct: 41 QASSQKSLSQRSSSQRASSQTSLGGTICRVCAKRVSTQ 78
>CG033_HUMAN (Q8WU49) Protein C7orf33| Length = 177 Score = 30.8 bits (68), Expect = 3.6 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 236 RGISLLSSVEAPTKAKKQWHLISHGASSS 322 RG+ ++ V APTK+ WH +S G + + Sbjct: 78 RGMEFIAPVSAPTKSGAPWHFLSQGPTDA 106
>SLSG4_BRAOL (P17841) S-locus-specific glycoprotein S14 precursor (SLSG-14)| (Fragment) Length = 434 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 13/61 (21%) Frame = +1 Query: 424 LSPSGDSAFGFRQMEGNSSSYLLAIWFNKIHEKTVVWYA-------------KSSSDSKC 564 +SP GF + +SS + L IW+ K+ ++T VW A K S ++ C Sbjct: 47 VSPGNVFELGFFRTN-SSSRWYLGIWYKKVSDRTYVWVANRDNPLSSSIGTLKISGNNPC 105 Query: 565 H 567 H Sbjct: 106 H 106
>SLSG6_BRAOL (P07761) S-locus-specific glycoprotein S6 precursor (SLSG-6)| Length = 436 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 424 LSPSGDSAFGFRQMEGNSSSYLLAIWFNKIHEKTVVWYA 540 +SP + GF + +SS + L IW+ K+ ++T VW A Sbjct: 50 VSPGNNFELGFFRTN-SSSRWYLGIWYKKLLDRTYVWVA 87
>PHNC1_PSEAE (Q9HYT0) Phosphonates import ATP-binding protein phnC 1 (EC| 3.6.3.28) Length = 267 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/73 (24%), Positives = 29/73 (39%) Frame = -3 Query: 516 MDLVEPDGEEVRGGVTFHLSETERGVAGGREP*AGWPLGHQGGASSDVHLCLSSRWNPXX 337 +DLV DG+ + L+ ER +G G + + L+S+W P Sbjct: 8 VDLVHADGQRALADIRLRLAAGERVAL----------IGPSGAGKTSLLRVLASQWRPSA 57 Query: 336 XXXQELEEAPWEM 298 + L E PW + Sbjct: 58 GRVELLGEEPWAL 70
>Y2628_MYCBO (P65030) Hypothetical protein Mb2628| Length = 206 Score = 30.0 bits (66), Expect = 6.1 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = -3 Query: 507 VEPDGEEVRGGVTFHLSETERGVAG-GREP*AGWPLGHQ--------GGASSDVHLCLS- 358 ++P G+ V GVTF ETERG AG E G P G + G +D + LS Sbjct: 117 LQPGGQHVIDGVTF--QETERGHAGYTTEGTTGLPAGGEMDYVDCASAGQGADESMLLSF 174 Query: 357 SRWNP 343 RW P Sbjct: 175 ERWAP 179
>Y2597_MYCTU (P65029) Hypothetical protein Rv2597/MT2673| Length = 206 Score = 30.0 bits (66), Expect = 6.1 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = -3 Query: 507 VEPDGEEVRGGVTFHLSETERGVAG-GREP*AGWPLGHQ--------GGASSDVHLCLS- 358 ++P G+ V GVTF ETERG AG E G P G + G +D + LS Sbjct: 117 LQPGGQHVIDGVTF--QETERGHAGYTTEGTTGLPAGGEMDYVDCASAGQGADESMLLSF 174 Query: 357 SRWNP 343 RW P Sbjct: 175 ERWAP 179
>NIA_VOLCA (P36841) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)| Length = 864 Score = 30.0 bits (66), Expect = 6.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 276 KQKSNGTSSPMAPPPVLATAAAGG 347 K+ + ++P APPPV+A AA GG Sbjct: 473 KEGATAAAAPAAPPPVVAAAANGG 496
>OLIG1_HUMAN (Q8TAK6) Oligodendrocyte transcription factor 1 (Oligo1)| Length = 271 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +1 Query: 352 SAAQAQVNITRGSSLMPQGPTSSWLSPSGDSAFGFRQMEGNSSS 483 + +QA+VN G+ L PQ P L S G+RQ +SSS Sbjct: 4 AVSQARVNAVPGTMLRPQRPGDLQLGASLYELVGYRQPPSSSSS 47
>TIPT_DROME (Q9U3V5) Protein tiptop| Length = 1024 Score = 30.0 bits (66), Expect = 6.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 285 SNGTSSPMAPPPVLATAAAGGSICCSSTSEHHS 383 + G +P APPP +A S C SS+S S Sbjct: 352 TGGVGTPSAPPPTRLATSASNSACSSSSSSTSS 384
>V1AR_MICOH (Q9WTV9) Vasopressin V1a receptor (V1aR) (Vascular/hepatic-type| arginine vasopressin receptor) (Antidiuretic hormone receptor 1a) (AVPR V1a) Length = 420 Score = 29.6 bits (65), Expect = 8.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 230 NGT*QWPVMTHDASSSWNSVAHGKSS 153 N + WP+ DA+SSW + H K S Sbjct: 14 NSSPWWPLSAEDANSSWEAAGHQKGS 39
>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)| Length = 515 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +3 Query: 264 KHQPKQKSNGTSSPMAPPPVLATAAAGGSICCSSTSEHHS 383 KHQ + N + SP +P P A S S HHS Sbjct: 86 KHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHS 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,062,138 Number of Sequences: 219361 Number of extensions: 2230508 Number of successful extensions: 7215 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7212 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
