>IFRD2_HUMAN (Q12894) Interferon-related developmental regulator 2 (SKMC15|
           protein)
          Length = 442

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 35/104 (33%), Positives = 55/104 (52%)
 Frame = -2

Query: 600 LFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEESLKIA 421
           ++ DM+AL + +  LA++       K   K +   QR  F+ +L  V+ GEC EE ++  
Sbjct: 299 VYEDMEALCSVLRTLATD-----SNKYRAKADRRRQRSTFRAVLHSVEGGECEEEIVRFG 353

Query: 420 GKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNI 289
              +VL + SW+       FK  LG G   H+Q+N LL+DIF +
Sbjct: 354 F--EVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGL 395

>IFRD1_MOUSE (P19182) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (TPA-induced sequence 7)
           (TIS7 protein)
          Length = 449

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
 Frame = -2

Query: 591 DMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEESLKIAGKR 412
           DM +L   +  LA++     G K   K +   QR +F+ +L  V+  + P E++K   +R
Sbjct: 306 DMDSLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETVKFGPER 360

Query: 411 DVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNIKAD--------KAETLSSN 256
             + + SW +    + FK  LG G   H+Q N  L+++F +           K   +S  
Sbjct: 361 --MYIDSWVKKHTYDTFKEVLGSGMQYHLQTNEFLRNVFELGPPVMLDAATLKTMKISRF 418

Query: 255 DKKIFRSGEEKGRALKLNKDR 193
           ++ ++ S   K R    +K R
Sbjct: 419 ERHLYNSAAFKARTKARSKCR 439

>IFRD1_RAT (P20695) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (IRPR)
          Length = 449

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 29/101 (28%), Positives = 51/101 (50%)
 Frame = -2

Query: 591 DMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEESLKIAGKR 412
           DM +L   +  LA++     G K   K +   QR +F+ +L  V+  + P E++K   +R
Sbjct: 306 DMDSLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETVKFGPER 360

Query: 411 DVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNI 289
             + + SW +    + FK  LG G   H+Q N  L+++F +
Sbjct: 361 --MYIDSWVKKHTYDTFKEALGSGMQYHLQTNEFLRNVFEL 399

>RECN_BACSU (P17894) DNA repair protein recN (Recombination protein N)|
          Length = 576

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = -2

Query: 342 GFLKHVQDNGLLQDIFNIKADKAETLSSNDKKIFRSGEEKGRALKLNKDRRLAQERKNAA 163
           G+ ++V+   LL+ +  +   + E     D   F+  E +   L+LN+D +L +ER+  +
Sbjct: 165 GYQRYVK---LLKKLKQLSESEQEMAHCLDLIQFQLEEIESAKLELNEDEQLQEERQQIS 221

Query: 162 LFEE*RERKQNKTSSTR 112
            FE+  E  QN  ++ R
Sbjct: 222 NFEKIYESLQNAYNALR 238

>CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 445

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = -2

Query: 552 SNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEESLKIAGKRDVLRVASWSELIQ 373
           SN+    GG     + + +QR   ++ + FV+ GE P +  + A   DVLR A   +L++
Sbjct: 263 SNILFICGGAFVGLEKVIEQR-FGKKSMGFVRPGEGPSKEKRTA---DVLRQAEPDDLVK 318

Query: 372 LNFFKRFLGR 343
                 F+GR
Sbjct: 319 FGLIPEFIGR 328

>CCD93_CHICK (Q5ZKI4) Coiled-coil domain-containing protein 93|
          Length = 617

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 312 LLQDIFNIKADKAETLSSNDKKIFRSGEEKGRALKLNKDR-RLAQERKNAALFEE*RERK 136
           L QDI N+KA+ AE     +       + +    KL K R  LA+  +  A+     +RK
Sbjct: 415 LQQDIENLKAEAAENGEEEEPNKLIDQQYQTEKEKLQKIRLLLARRNREIAIL----QRK 470

Query: 135 QNKTSSTRQFTPFELEFIYLY 73
            ++  S  + T ++  FI LY
Sbjct: 471 IDEVPSRAELTQYQKRFIELY 491

>MUTS_BUCAI (P57504) DNA mismatch repair protein mutS|
          Length = 802

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = -2

Query: 333 KHVQDNGLLQDIFNIKADKAETLSSNDKKIFRSGEEK 223
           K ++D G++ +++NI+ D+  ++  N K+  ++ E+K
Sbjct: 420 KCIRDGGVIAELYNIELDELRSIKINSKEYIKNFEQK 456

>SYA_THIFE (Q56273) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 877

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 600 LFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQR--ILDFVKYGECPEESLK 427
           L +DM+  +A +A   S L    GG G + K      DL  R  + +F  Y  C +E   
Sbjct: 412 LIMDMEGYEAAMADERSPLPCRLGGSG-EVKTERVYHDLAMRLPVTEFTGYSTCADEGKV 470

Query: 426 IAGKRDVLRVA 394
           +A  RD   VA
Sbjct: 471 VALIRDGEEVA 481

>RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1252

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -2

Query: 450 ECPEESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIF 295
           +CPE  + +  K D+L + +  E IQ+  +K+FL  G L   +DN  L+++F
Sbjct: 3   KCPER-VSVKKKEDILDLPNLIE-IQIKSYKQFLQIGKLAEERDNVGLEEVF 52

>HSP7B_DROME (P11146) Heat shock 70 kDa protein cognate 2 (Heat shock 70 kDa|
           protein 87D)
          Length = 633

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = -2

Query: 297 FNIKADKAETLSSNDKKIFRS-----GEEKGRALKLNKDRRLAQERKNAALFEE*RERKQ 133
           F++ AD    +++ D    +S       +KGR  K   DR L++  K     +  RER Q
Sbjct: 479 FDLNADGILNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQ 538

Query: 132 NKTSSTRQFTPFELEFIYLYLCKQ 61
           +K +         LE  Y+Y C+Q
Sbjct: 539 SKNN---------LE-AYIYACRQ 552

>ALG11_SCHPO (O74878) Alpha-1,2-mannosyltransferase alg11 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 11)
           (Galactomannan-deficiency protein 3)
          Length = 471

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 416 FPAIFSDSSGHSPY-LTKSKIR*NR--SLWSERFFLSAPFPPASAERFE 553
           F  ++SD+  H+ Y +T S    N   SLW +   LS  FPP +    E
Sbjct: 219 FAQLYSDAGSHADYVMTNSSWTRNHIASLWGKDIQLSVVFPPCNTSELE 267

>RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1252

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -2

Query: 450 ECPEESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIF 295
           +CPE  + +  K D+L + +  E IQ+  +K+FL  G L   +DN  L+++F
Sbjct: 3   KCPER-VSVKKKEDILDLPNLIE-IQIKSYKQFLQIGKLAEERDNIGLEEVF 52

>UREE_SILPO (Q5LSQ1) Urease accessory protein ureE|
          Length = 149

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 414 RDVLRVASWSEL---IQLNFFKRFLGRGFLKHVQDNGLLQDI 298
           RD+ R   WSE    + L++  RFL R  L  VQD   L D+
Sbjct: 7   RDIRRTGHWSEADDRVTLSYDDRFLRRKRLITVQDKAFLVDL 48

>Y1850_AQUAE (O67702) Hypothetical protein aq_1850|
          Length = 210

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 456 YGECPEESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLL-QDIFN 292
           +GE P+E ++ A   D+ ++A + +  +L F    L RG++     N +L +DIFN
Sbjct: 108 FGELPDEQVQEALNNDLKQLAKYGKPFKLIFHVSTLQRGYV----GNAILEEDIFN 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,210,048
Number of Sequences: 219361
Number of extensions: 1595230
Number of successful extensions: 4939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4936
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)