>gb|BT009575.1| Triticum aestivum clone wre1n.pk0030.h1:fis, full insert mRNA
           sequence
          Length = 1223

 Score =  432 bits (218), Expect = e-118
 Identities = 254/266 (95%)
 Strand = Plus / Minus

                                                                       
Query: 382 gtcatgtgaggctgccgctgagcacggcggatgcctttgccacggccctggcgaccctgt 441
           ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 909 gtcatgtgaggctcccgctgagcacggcggatgcttgtgccacggccctggcgaccctgt 850

                                                                       
Query: 442 gaacctcgtgctgcaccagcttccacgacgccgaggtgttgctcctcctggcggtggcaa 501
           ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct: 849 gaacctcgtgctgcaccagcttccaggacgccgaggtgttgctgctcctcgcggtggcta 790

                                                                       
Query: 502 tggcgtcggctatgccagggtacgacgcggtatcccagtcgttctgctccgacggtccat 561
           |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 789 tggcgtcggctatgccgggatacgacgcggtatcccagtcgttctgctccgacggtccgt 730

                                                                       
Query: 562 agatcagatgcttgtaccaggcttgcttgaagatgccttcccggttagtgaaggcccgct 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 729 agatcagatgcttgtaccaggcttgcttgaagatgccttcccggttagtgaaggctcgct 670

                                     
Query: 622 ccgcctgcatgagccggtcgttgagt 647
           | ||||||||||||||||||||||||
Sbjct: 669 ctgcctgcatgagccggtcgttgagt 644



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 161  ccaaagcatatgtacatgggtcgcatcatacgcagactgatcgg 204
            ||||||||||||||||  ||||||||||| |||||| |||||||
Sbjct: 1073 ccaaagcatatgtacactggtcgcatcatgcgcagattgatcgg 1030



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 115  tttgcagctcattaacagaataca 138
            ||||||||||||||||||||||||
Sbjct: 1132 tttgcagctcattaacagaataca 1109

>ref|NM_191141.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1866

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 534  tcccagtcgttctgctccgacggtccatagatcagatgcttgtaccaggcttgcttgaag 593
            |||||||| ||||| || || |||||||||| |||||| ||| ||||  || ||||||| 
Sbjct: 1715 tcccagtcattctgttctgatggtccatagaccagatgtttgaaccattctcgcttgaac 1656

                                                                 
Query: 594  atgccttcccggttagtgaaggcccgctccgcctgcatgagccggtcgttgag 646
            | |||||||| ||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 1655 aggccttccctgttagtgaatgcccgttctgcctgcatgagccggtcattgag 1603

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 586      gcttgaagatgccttcccggttagtgaaggcccgctccgcctgcatgagccggtcgttga 645
                ||||||| | |||||||| ||||||||| ||||| || ||||||||||||||||| ||||
Sbjct: 30916709 gcttgaacaggccttccctgttagtgaatgcccgttctgcctgcatgagccggtcattga 30916768

                 
Query: 646      g 646
                |
Sbjct: 30916769 g 30916769

>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0638D12
          Length = 161277

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 586    gcttgaagatgccttcccggttagtgaaggcccgctccgcctgcatgagccggtcgttga 645
              ||||||| | |||||||| ||||||||| ||||| || ||||||||||||||||| ||||
Sbjct: 117076 gcttgaacaggccttccctgttagtgaatgcccgttctgcctgcatgagccggtcattga 117135

               
Query: 646    g 646
              |
Sbjct: 117136 g 117136

>gb|BT018693.1| Zea mays clone EL01N0513A09.d mRNA sequence
          Length = 1624

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 586  gcttgaagatgccttcccggttagtgaaggcccgctccgcctgcatgagccggtcgttga 645
            |||||||||||||||||| | ||||||| || ||||| | |||||| || ||||| ||||
Sbjct: 1240 gcttgaagatgccttccctgctagtgaatgcacgctcggtctgcataagacggtcattga 1181

              
Query: 646  gt 647
            ||
Sbjct: 1180 gt 1179

>emb|CT573339.6| M.truncatula DNA sequence from clone MTH2-82H11 on chromosome 3,
             complete sequence
          Length = 107004

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 98    gcattacattacatgcctttgcagctca 125
             ||||||||| ||||||||||||||||||
Sbjct: 12251 gcattacatcacatgcctttgcagctca 12278

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 613    aggcccgctccgcctgcatgagccggt 639
              |||||||||||||||||| ||||||||
Sbjct: 574723 aggcccgctccgcctgcaagagccggt 574749

>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence
          Length = 164511

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   attaacagaatacacaaacaa 145
             |||||||||||||||||||||
Sbjct: 81048 attaacagaatacacaaacaa 81028

>emb|Z81010.2|HSN10C3 Human DNA sequence from clone LL22NC03-10C3 on chromosome 22, complete
             sequence
          Length = 38115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 331   ttgtgttcattctttccattg 351
             |||||||||||||||||||||
Sbjct: 30534 ttgtgttcattctttccattg 30514

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 629     catgagccggtcgttgagtgc 649
               |||||||||||||||||||||
Sbjct: 2838766 catgagccggtcgttgagtgc 2838786

>ref|XM_508120.1| PREDICTED: Pan troglodytes similar to PWWP domain containing 2
           (LOC450837), mRNA
          Length = 1764

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 689 ttgctcctcctggcggtggc 670

>gb|DQ214591.1| Taeniopygia guttata clone 0058P0059G04 hematological and neurological
            expressed sequence 1-like mRNA, complete sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gcaccagcatgatcatgcac 315
            ||||||||||||||||||||
Sbjct: 1288 gcaccagcatgatcatgcac 1269

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    cgtgctgcaccagcttccac 467
              ||||||||||||||||||||
Sbjct: 188068 cgtgctgcaccagcttccac 188087

>gb|AC162612.2| Mus musculus chromosome 19, clone RP24-334K20, complete sequence
          Length = 145561

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 322   aagcaaatattgtgttcattcttt 345
             |||||||||||||||| |||||||
Sbjct: 94940 aagcaaatattgtgttgattcttt 94917

>gb|BC011630.2| Homo sapiens PWWP domain containing 2, mRNA (cDNA clone
           IMAGE:3957606), partial cds
          Length = 2116

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 199 ttgctcctcctggcggtggc 180

>ref|XM_567083.1| Cryptococcus neoformans var. neoformans JEC21 A/G-specific adenine
           DNA glycosylase (CNA00660) partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 cgtgctgcaccagcttccac 467
           ||||||||||||||||||||
Sbjct: 133 cgtgctgcaccagcttccac 152

>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the 5'
              end of the gene for protein kinase (PKE), gene KIAA1674,
              gene LOC170394, the 5' end of a novel gene and six CpG
              islands, complete sequence
          Length = 132772

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ttgctcctcctggcggtggc 499
              ||||||||||||||||||||
Sbjct: 118652 ttgctcctcctggcggtggc 118633

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 528     gcggtatcccagtcgttctgctcc 551
               |||||||| |||||||||||||||
Sbjct: 1601393 gcggtatcgcagtcgttctgctcc 1601416

>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 127     taacagaatacacaaacaag 146
               ||||||||||||||||||||
Sbjct: 1188022 taacagaatacacaaacaag 1188041

>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 127     taacagaatacacaaacaag 146
               ||||||||||||||||||||
Sbjct: 1209646 taacagaatacacaaacaag 1209665

>gb|BC068574.1| Homo sapiens PWWP domain containing 2, mRNA (cDNA clone MGC:87543
           IMAGE:30344364), complete cds
          Length = 2624

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 725 ttgctcctcctggcggtggc 706

>emb|AL035592.1|SPCC1393 S.pombe chromosome III cosmid c1393
          Length = 32625

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   cttttgtttccacccccaat 258
             ||||||||||||||||||||
Sbjct: 17409 cttttgtttccacccccaat 17428

>emb|AJ719480.1| Gallus gallus mRNA for hypothetical protein, clone 2l14
          Length = 1436

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gcaccagcatgatcatgcac 315
            ||||||||||||||||||||
Sbjct: 1324 gcaccagcatgatcatgcac 1305

>ref|NM_001006425.1| Gallus gallus hematological and neurological expressed 1 (HN1), mRNA
          Length = 1436

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gcaccagcatgatcatgcac 315
            ||||||||||||||||||||
Sbjct: 1324 gcaccagcatgatcatgcac 1305

>dbj|AK128663.1| Homo sapiens cDNA FLJ46823 fis, clone TUTER1000014
          Length = 2446

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 564 ttgctcctcctggcggtggc 545

>gb|AF318365.1|AF318365 Homo sapiens pp8607 mRNA, complete cds
          Length = 2316

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 378 ttgctcctcctggcggtggc 359

>ref|XM_936268.1| PREDICTED: Homo sapiens PWWP domain containing 2 (PWWP2), mRNA
          Length = 2884

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 996 ttgctcctcctggcggtggc 977

>tpg|BK001552.1| TPA: TPA_inf: Gallus gallus HN1 mRNA, complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gcaccagcatgatcatgcac 315
            ||||||||||||||||||||
Sbjct: 1305 gcaccagcatgatcatgcac 1286

>emb|CR523973.1| Gallus gallus finished cDNA, clone ChEST62d5
          Length = 884

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 gcaccagcatgatcatgcac 315
           ||||||||||||||||||||
Sbjct: 787 gcaccagcatgatcatgcac 768

>emb|AL844567.22| Zebrafish DNA sequence from clone DKEY-77D17 in linkage group 16,
             complete sequence
          Length = 174845

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgacctgcattacattacat 111
             ||||||||||||||||||||
Sbjct: 44671 tgacctgcattacattacat 44690

>emb|CT009687.10| Zebrafish DNA sequence from clone DKEY-5I20 in linkage group 14,
             complete sequence
          Length = 189137

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aatacacaaacaagcacaac 152
             ||||||||||||||||||||
Sbjct: 43047 aatacacaaacaagcacaac 43028

>ref|NM_138499.2| Homo sapiens PWWP domain containing 2 (PWWP2), mRNA
          Length = 2624

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttgctcctcctggcggtggc 499
           ||||||||||||||||||||
Sbjct: 725 ttgctcctcctggcggtggc 706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,557,251
Number of Sequences: 3902068
Number of extensions: 4557251
Number of successful extensions: 76012
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75832
Number of HSP's gapped (non-prelim): 180
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)