ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29m18 |
|---|---|
| Clone Library Name | barley_pub |
>NFYA5_ARATH (Q9SYH4) Nuclear transcription factor Y subunit A-5 (AtNF-YA-5)| Length = 308 Score = 37.4 bits (85), Expect = 0.014 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKK 366 HA++RARG+GGRFLNTKK Sbjct: 221 HALKRARGSGGRFLNTKK 238
>NFYA7_ARATH (Q84JP1) Nuclear transcription factor Y subunit A-7 (AtNF-YA-7)| Length = 190 Score = 36.2 bits (82), Expect = 0.032 Identities = 17/22 (77%), Positives = 18/22 (81%), Gaps = 1/22 (4%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKK-DEH 357 HA+RR RG GGRFLN KK DEH Sbjct: 143 HAIRRPRGCGGRFLNAKKEDEH 164
>NFYA6_ARATH (Q9LVJ7) Nuclear transcription factor Y subunit A-6 (AtNF-YA-6)| Length = 308 Score = 36.2 bits (82), Expect = 0.032 Identities = 14/20 (70%), Positives = 18/20 (90%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKKDE 360 HA++R RG+GGRFLNTKK + Sbjct: 214 HALKRVRGSGGRFLNTKKHQ 233
>NFYAA_ARATH (Q8LFU0) Nuclear transcription factor Y subunit A-10 (AtNF-YA-10)| Length = 269 Score = 35.8 bits (81), Expect = 0.042 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTK 369 HAMRR RG+GGRFLNTK Sbjct: 174 HAMRRPRGSGGRFLNTK 190
>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)| (Transcriptional activator HAP2C) Length = 340 Score = 35.4 bits (80), Expect = 0.055 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKK 366 HA++R RG+GGRFLNTKK Sbjct: 222 HALKRPRGSGGRFLNTKK 239
>NFYA8_ARATH (Q9LNP6) Nuclear transcription factor Y subunit A-8 (AtNF-YA-8)| Length = 328 Score = 35.4 bits (80), Expect = 0.055 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKK 366 HA++R RG+GGRFLNTKK Sbjct: 215 HALKRPRGSGGRFLNTKK 232
>NFYA2_ARATH (Q9M9X4) Nuclear transcription factor Y subunit A-2 (AtNF-YA-2)| (Transcriptional activator HAP2B) Length = 295 Score = 34.7 bits (78), Expect = 0.094 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTK 369 HA+RR RG+GGRFLNTK Sbjct: 183 HALRRPRGSGGRFLNTK 199
>NFYA4_ARATH (Q8VY64) Nuclear transcription factor Y subunit A-4 (AtNF-YA-4)| Length = 198 Score = 34.3 bits (77), Expect = 0.12 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -1 Query: 419 HAMRRARGTGGRFLNTKKD 363 HA+RR RG GGRFLN KK+ Sbjct: 141 HAIRRPRGCGGRFLNAKKE 159
>HAP2_SCHPO (P24488) Transcriptional activator hap2| Length = 334 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -1 Query: 422 EHAMRRARGTGGRFLNTKK 366 +HAMRR RG GGRFL K Sbjct: 51 KHAMRRPRGPGGRFLTADK 69
>FRM4A_HUMAN (Q9P2Q2) FERM domain-containing protein 4A| Length = 1024 Score = 30.8 bits (68), Expect = 1.4 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 16/95 (16%) Frame = +1 Query: 4 STAVYKHTPSIP--SLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPES- 174 STA +K + S T + + +Q ++SS + H R TR P+M +AA P+S Sbjct: 920 STASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRV---TRMPQMCKATSAALPQSQ 976 Query: 175 -------------PTSPHAVATWHDGRRPGGAAVL 240 P+SPH + TW G + +L Sbjct: 977 RSSTPSSEIGATPPSSPHHILTWQTGEATENSPIL 1011
>NFYA9_ARATH (Q945M9) Nuclear transcription factor Y subunit A-9 (AtNF-YA-9)| Length = 303 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 422 EHAMRRARGTGGRFLNTKKDE 360 +HAMRR RGTGGRF E Sbjct: 208 QHAMRRPRGTGGRFAKKTNTE 228
>ETS3_DROME (P29774) DNA-binding protein D-ETS-3| Length = 490 Score = 30.0 bits (66), Expect = 2.3 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +1 Query: 28 PSIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSPHAVATWH 207 P++PSLT ASSS +H++HK R K ++C T++ +P+S + + Sbjct: 184 PALPSLT--------ASSS--SHVEHKV---RADKSTLDCATTSSHAAAPSSSSSASDHQ 230 Query: 208 DGRRPG 225 GR G Sbjct: 231 QGRISG 236
>FRM4A_MOUSE (Q8BIE6) FERM domain-containing protein 4A| Length = 1020 Score = 30.0 bits (66), Expect = 2.3 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 16/95 (16%) Frame = +1 Query: 4 STAVYKHTPSIP--SLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPES- 174 STA +K + S T + + +Q ++SS + H R TR P+M +AA P+S Sbjct: 916 STASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRV---TRMPQMCKATSAALPQSQ 972 Query: 175 -------------PTSPHAVATWHDGRRPGGAAVL 240 P+SPH + TW G + ++ Sbjct: 973 RSSTPSSEIGATPPSSPHHILTWQTGEATENSPIM 1007
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +1 Query: 40 SLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 186 +L I T A A + + K GDN+T +P ++ GP P +P Sbjct: 171 TLVILSTVAPDAGRYYVQAVNDKNGDNKTSQPITLAVENVGGPADPIAP 219
>HAP2_YEAST (P06774) Transcriptional activator HAP2| Length = 265 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -1 Query: 422 EHAMRRARGTGGRFL 378 +HAMRR RG GGRFL Sbjct: 201 KHAMRRPRGEGGRFL 215
>HAP2_KLULA (P53768) Transcriptional activator HAP2| Length = 300 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -1 Query: 422 EHAMRRARGTGGRFL 378 +HAMRR RG GGRFL Sbjct: 227 KHAMRRPRGQGGRFL 241
>VINEX_HUMAN (O60504) Vinexin (Sorbin and SH3 domain-containing protein 3)| (SH3-containing adapter molecule 1) (SCAM-1) Length = 671 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 124 TRKPRMNCLDTAAGPESPTSPHAVATWHDGRRPGGAAVL 240 +R+PR+ D GP+ PTSP A R P + L Sbjct: 513 SREPRLRLCDD--GPQLPTSPRLTAAARSARHPSSPSAL 549
>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen| homolog) Length = 993 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 224 PGRRPSCHVATAWGLVGDSGPAAVSRQFILGFRVLLSPLLCWMCASGEELAGCA 63 P R P+ + ++W L GPAA+ + +LL+PLL C G G A Sbjct: 601 PSREPNTYGESSWRL----GPAAIGLILLGLLMLLLAPLLLLTCDCGSGPIGGA 650
>WRK72_ARATH (Q9LXG8) Probable WRKY transcription factor 72 (WRKY DNA-binding| protein 72) Length = 548 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = +1 Query: 22 HTPSIPSLTINLTRAQ--PASSSPLAHIQHKRGDN---RTRKPRMNCLDTAAGPESPTSP 186 H+P P++T++LT Q +SSS L + + N R +N T++ +P++ Sbjct: 340 HSPLHPTVTLDLTAPQHSSSSSSSLLSLNFNKFSNSFQRFPSTSLNFSSTSSTSSNPSTL 399 Query: 187 HAVATWHDG 213 + A W +G Sbjct: 400 NLPAIWGNG 408
>NFYA1_ARATH (Q9LXV5) Nuclear transcription factor Y subunit A-1 (AtNF-YA-1)| (Transcriptional activator HAP2A) Length = 272 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -1 Query: 422 EHAMRRARGTGGRFLNTKKDE 360 +HAMRRAR +GGRF KK E Sbjct: 214 KHAMRRARASGGRF--AKKSE 232
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +1 Query: 76 SSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSPHAVATWHDG 213 S++PLA +H+R +T P + + S + PH VATWH G Sbjct: 46 SANPLAR-RHERVRLKTASP---AVVKHSNHSSASPPHEVATWHHG 87
>CUTC_XYLFT (Q87DU4) Copper homeostasis protein cutC| Length = 267 Score = 28.5 bits (62), Expect = 6.7 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = -1 Query: 206 CHVATAWGLVGDSGPAAVSRQFI-LGFRVLLSPLLCWMCASGEEL-AGCARVRLIVRLGM 33 CH GL G AV R+ + + VL+ P S EE+ C V VRLG Sbjct: 52 CHGLEGGGLTPSYGMLAVVRERLHIPLYVLIRPRGGDFVFSEEEMEVMCGDVECCVRLGC 111 Query: 32 DGVCL 18 DGV L Sbjct: 112 DGVVL 116
>TREY_MYCTU (Q10768) Putative maltooligosyl trehalose synthase (EC 5.4.99.15)| ((1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase) Length = 765 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Frame = +1 Query: 145 CLDTAAGPESPTSPHAVATW--HDGR----RPGGAAVLGC 246 C+ AAG + P P AVA H GR PG AAVL C Sbjct: 347 CIAAAAGADHPLLPAAVAALLRHIGRYRCDYPGQAAVLPC 386
>WDR8_HUMAN (Q9P2S5) WD-repeat protein 8| Length = 460 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 119 LSPLLCWMCASGEELAGCARVRLIVR 42 LS LLC G+ LA C + RL+VR Sbjct: 9 LSSLLCKFSPDGKYLASCVQYRLVVR 34
>SECD_RICPR (Q9ZCW8) Protein-export membrane protein secD| Length = 518 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 192 GVGAGRGFRACCCVQAIHSWLSRSVITPLVLDV 94 GVGA +GF + I S S +IT L++DV Sbjct: 473 GVGAIKGFAVALTIGIISSMFSAIIITKLLIDV 505
>PER_ANTPE (Q17062) Period circadian protein| Length = 849 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 22 HTPSIPSLTINLTRA-QPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 186 +TPS+ NL R+ + S P+A+ H + R+ + C A P S T+P Sbjct: 681 NTPSVYEKPHNLKRSSKQMESEPIANKHHCPSSRQFRRKQTTCSGGFAQPPSATNP 736
>TOP2A_MOUSE (Q01320) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1528 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 115 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 216 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 93 DNKQRDPKMSCIRVTIDPEN----NVISIWNNGK 122
>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1533 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 115 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 216 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 94 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 123
>CUTC_XYLFA (Q9PDN8) Copper homeostasis protein cutC| Length = 267 Score = 28.1 bits (61), Expect = 8.8 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = -1 Query: 206 CHVATAWGLVGDSGPAAVSRQFI-LGFRVLLSPLLCWMCASGEEL-AGCARVRLIVRLGM 33 CH GL G AV R+ + + VL+ P S EE+ C V VRLG Sbjct: 52 CHGLGGGGLTPSYGMLAVVRERLHIPLYVLIRPRGGDFVFSEEEMEVMCCDVECCVRLGC 111 Query: 32 DGVCL 18 DGV L Sbjct: 112 DGVVL 116
>TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1531 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 115 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 216 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 94 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 123
>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad| ubiquitination regulatory factor 1 homolog) (DSmurf) (Lethal with a checkpoint kinase protein) Length = 1061 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/56 (26%), Positives = 24/56 (42%) Frame = +1 Query: 64 AQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGRRPGGA 231 A P SS+ A ++ DN + P+ A +PTSP + +G G+ Sbjct: 312 ATPTSSTTSASVRLHSNDNHVKTPKHQTNGHAPPESTPTSPTGQQNYVNGNAQNGS 367
>TOP2A_CRIGR (P41515) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 115 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 216 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 93 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 122
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +1 Query: 31 SIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 186 S P ++N T A ASS+PL + + + P + T + S T+P Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 521 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +1 Query: 31 SIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 186 S P ++N T A ASS+PL + + + P + T + S T+P Sbjct: 356 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 407
>LFTR_RALSO (Q8XYY9) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 248 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 187 HAVATWHDGRRPGG 228 H+V TWH GRR GG Sbjct: 138 HSVETWHGGRRVGG 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,004,522 Number of Sequences: 219361 Number of extensions: 1147255 Number of successful extensions: 3930 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3926 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
