ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29m18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009063.1| Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence Length = 1378 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 364 tccttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 |||||||| |||||||||||||| || || |||||||||||||| ||||||||||| Sbjct: 750 tccttcttggtgttgaggaagcgccctcccgtgcccctcgcccggcgcatcgcgtg 695
>gb|AY110209.1| Zea mays CL834_-1 mRNA sequence Length = 1242 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 370 ttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||||||||||||||| ||||||| ||| ||| |||| ||||||||||| Sbjct: 443 ttcgtgttgaggaagcgcccgccggagcctctcacccggcgcatcgcgtg 394
>ref|XM_476685.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| ||||||||||||||||||||| |||||| ||| || ||||| ||||| Sbjct: 818 ttcttggtgttgaggaagcggccgccgctgccccgcgcgcggcgcatggcgtg 766
>gb|AY023473.1| Oryza sativa microsatellite MRG5798 containing (TCT)X8, genomic sequence Length = 224 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| ||||||||||||||||||||| |||||| ||| || ||||| ||||| Sbjct: 219 ttcttggtgttgaggaagcggccgccgctgccccgcgcgcggcgcatggcgtg 167
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| |||||||||||||||||||||| ||| || ||||| ||||| ||||| Sbjct: 18793 ttcttggtgttgaggaagcggccgccggagcctctggcccggcgcatggcgtg 18845
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| |||||||||||||||||||||| ||| || ||||| ||||| ||||| Sbjct: 24785097 ttcttggtgttgaggaagcggccgccggagcctctggcccggcgcatggcgtg 24785149 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 27602808 gaaagccaagaatgaattgcctgaaaacagcag 27602776
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| |||||||||||||||||||||| ||| || ||||| ||||| ||||| Sbjct: 70509 ttcttggtgttgaggaagcggccgccggagcctctggcccggcgcatggcgtg 70561
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| ||||||||||||||||||||| |||||| ||| || ||||| ||||| Sbjct: 3160366 ttcttggtgttgaggaagcggccgccgctgccccgcgcgcggcgcatggcgtg 3160418 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 ctccgccgccgccgtgctcgtcc 366 ||||||||||||||||||||||| Sbjct: 23443349 ctccgccgccgccgtgctcgtcc 23443327 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gctccgccgccgccgtgctc 362 |||||||||||||||||||| Sbjct: 5506961 gctccgccgccgccgtgctc 5506942
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| |||||||||||||||||||||| ||| || ||||| ||||| ||||| Sbjct: 24874881 ttcttggtgttgaggaagcggccgccggagcctctggcccggcgcatggcgtg 24874933 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 27694131 gaaagccaagaatgaattgcctgaaaacagcag 27694099
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| ||||||||||||||||||||| |||||| ||| || ||||| ||||| Sbjct: 75356 ttcttggtgttgaggaagcggccgccgctgccccgcgcgcggcgcatggcgtg 75408
>dbj|AK106398.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F12, full insert sequence Length = 2034 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 367 ttcttcgtgttgaggaagcggccgccggtgcccctcgcccgccgcatcgcgtg 419 ||||| |||||||||||||||||||||| ||| || ||||| ||||| ||||| Sbjct: 1280 ttcttggtgttgaggaagcggccgccggagcctctggcccggcgcatggcgtg 1228
>ref|XM_469371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1358 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 1105 gaaagccaagaatgaattgcctgaaaacagcag 1073
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 44505 gaaagccaagaatgaattgcctgaaaacagcag 44473
>dbj|AK099549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033E22, full insert sequence Length = 643 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 481 gaaagccaagaatgaattgcctgaaaacagcag 449
>dbj|AK069854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036P10, full insert sequence Length = 1959 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcctggacacagcag 160 ||||||||||||||||||||||| | ||||||| Sbjct: 1659 gaaagccaagaatgaattgcctgaaaacagcag 1627
>gb|AY632421.1| Streptomyces viridochromogenes PTT biosynthetic gene Length = 40241 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 200 cgtggcacgacggccggcggccag 223 |||||||||||||||||||||||| Sbjct: 22099 cgtggcacgacggccggcggccag 22076
>emb|X65195.2|SVPTT Streptomyces viridochromogenes strain Tue494 phosphinothricin tripeptide biosynthetic gene cluster: ORFB1, ORFB2, ORF1, phsB gene, ORFM, phsC gene, pmi gene, adhP gene, ORF3, pgdP gene, ppm gene, ppd gene, ORFx, pgmP gene, cpps gene, cppm gene, aldP gene, pmet gene, pms gene, phsA gene, pat gene, dea gene, the1 gene, the2 gene, trs gene, prpA gene, ORFE1, ORFE2 and ORFE3 (partial) Length = 37823 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 200 cgtggcacgacggccggcggccag 223 |||||||||||||||||||||||| Sbjct: 23701 cgtggcacgacggccggcggccag 23678
>gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 map 17, complete sequence Length = 203077 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 325 tcgcctttgcccgcctcggctcc 347 ||||||||||||||||||||||| Sbjct: 127204 tcgcctttgcccgcctcggctcc 127182
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 380 ggaagcggccgccggtgcccctcgcccgccg 410 ||||| ||||||||||||||| ||||||||| Sbjct: 4401727 ggaagaggccgccggtgccccgcgcccgccg 4401757
>dbj|AK013275.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810440H14 product:t-complex protein 1, related sequence 1, full insert sequence Length = 1746 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcgcctttgcccgcctcggctcc 347 ||||||||||||||||||||||| Sbjct: 66 tcgcctttgcccgcctcggctcc 88
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 383 agcggccgccggtgcccctcgcc 405 ||||||||||||||||||||||| Sbjct: 8078210 agcggccgccggtgcccctcgcc 8078188 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cggctccgccgccgccgtgc 360 |||||||||||||||||||| Sbjct: 8913472 cggctccgccgccgccgtgc 8913491
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 ctccgccgccgccgtgctcgtcc 366 ||||||||||||||||||||||| Sbjct: 3742 ctccgccgccgccgtgctcgtcc 3720
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 ctccgccgccgccgtgctcgtcc 366 ||||||||||||||||||||||| Sbjct: 63246 ctccgccgccgccgtgctcgtcc 63224
>emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chromosome 15, complete sequence Length = 203949 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 tcgcctttgcccgcctcggctcc 347 ||||||||||||||||||||||| Sbjct: 76394 tcgcctttgcccgcctcggctcc 76416
>gb|AF271636.1|AF271636 Zea mays lysine ketoglutarate reductase/saccharopine dehydrogenase (LKRSDH) gene, complete cds Length = 15146 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 gccgtggcgacgtggcacgacg 211 |||||||||||||||||||||| Sbjct: 2452 gccgtggcgacgtggcacgacg 2431
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 390 gccggtgcccctcgcccgccgc 411 |||||||||||||||||||||| Sbjct: 823761 gccggtgcccctcgcccgccgc 823740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccgccgccgccgtgctcgtc 365 |||||||||||||||||||| Sbjct: 4448040 ccgccgccgccgtgctcgtc 4448021
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 cggctccgccgccgccgtgctc 362 |||||||||||||||||||||| Sbjct: 5327501 cggctccgccgccgccgtgctc 5327480
>ref|NM_112983.2| Arabidopsis thaliana transcription factor AT3G20910 mRNA, complete cds Length = 1217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 1044 gaaagccaagaatgaattgcc 1024
>ref|NM_001035657.1| Arabidopsis thaliana protein transporter AT3G20920 transcript variant AT3G20920.2 mRNA, complete cds Length = 1776 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 1510 gaaagccaagaatgaattgcc 1530
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 caaacacacgccatccatccc 38 ||||||||||||||||||||| Sbjct: 730701 caaacacacgccatccatccc 730681
>ref|XM_567721.1| Cryptococcus neoformans var. neoformans JEC21 uroporphyrinogen-III synthase (CNK02510) partial mRNA Length = 900 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 caaacacacgccatccatccc 38 ||||||||||||||||||||| Sbjct: 781 caaacacacgccatccatccc 761
>gb|AF184920.1| Rattus norvegicus GDNF-family receptor alpha 3 (GFRalpha-3) mRNA, partial cds Length = 667 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ggacacagcagcaggccctga 170 ||||||||||||||||||||| Sbjct: 243 ggacacagcagcaggccctga 223
>gb|AF412056.1|AF412056 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds Length = 1249 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 1086 gaaagccaagaatgaattgcc 1066
>emb|BX822776.1|CNS0A647 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1335 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 1150 gaaagccaagaatgaattgcc 1130
>ref|NM_053398.1| Rattus norvegicus glial cell line derived neurotrophic factor family receptor alpha 3 (Gfra3), mRNA Length = 2070 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ggacacagcagcaggccctga 170 ||||||||||||||||||||| Sbjct: 703 ggacacagcagcaggccctga 683
>gb|AY087696.1| Arabidopsis thaliana clone 37744 mRNA, complete sequence Length = 1262 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 1088 gaaagccaagaatgaattgcc 1068
>gb|BC079378.1| Rattus norvegicus glial cell line derived neurotrophic factor family receptor alpha 3, mRNA (cDNA clone MGC:94884 IMAGE:7110848), complete cds Length = 2070 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ggacacagcagcaggccctga 170 ||||||||||||||||||||| Sbjct: 703 ggacacagcagcaggccctga 683
>dbj|AP001304.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFD22 Length = 33330 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gaaagccaagaatgaattgcc 148 ||||||||||||||||||||| Sbjct: 7287 gaaagccaagaatgaattgcc 7267
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gcctcggctccgccgccgccg 357 ||||||||||||||||||||| Sbjct: 69907 gcctcggctccgccgccgccg 69887
>ref|XM_475658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 335 ccgcctcggctccgccgccgccgtgctc 362 ||||||| ||||||||||||||||||| Sbjct: 396 ccgcctcccctccgccgccgccgtgctc 423
>gb|DQ214174.1| Taeniopygia guttata clone 0058P0054D01 GCIP-interacting protein p29 variant 3-like mRNA, complete sequence Length = 1118 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 cccgcctcggctccgccgccgccg 357 |||||||| ||||||||||||||| Sbjct: 166 cccgcctctgctccgccgccgccg 143
>gb|DQ214173.1| Taeniopygia guttata clone 0058P0047D04 GCIP-interacting protein p29 variant 3-like mRNA, complete sequence Length = 1118 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 cccgcctcggctccgccgccgccg 357 |||||||| ||||||||||||||| Sbjct: 166 cccgcctctgctccgccgccgccg 143
>gb|DQ214172.1| Taeniopygia guttata clone 0061P0008H08 GCIP-interacting protein p29 variant 2-like mRNA, complete sequence Length = 1054 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 cccgcctcggctccgccgccgccg 357 |||||||| ||||||||||||||| Sbjct: 145 cccgcctctgctccgccgccgccg 122
>ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 990 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 633 cctcggctccgccgccgccg 652
>ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2595 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 240 cctcggctccgccgccgccg 221
>ref|XM_463595.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4884 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 tttgcccgcctcggctccgccgccgccg 357 |||||||||| |||| |||||||||||| Sbjct: 25 tttgcccgccgcggcgccgccgccgccg 52
>ref|XM_477029.1| Oryza sativa (japonica cultivar-group), mRNA Length = 825 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gctccgccgccgccgtgctc 362 |||||||||||||||||||| Sbjct: 356 gctccgccgccgccgtgctc 337
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccgcctcggctccgccgccgccgt 358 |||||||||| ||||||||||||| Sbjct: 27805 ccgcctcggcgccgccgccgccgt 27828
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccgccgccgccgtgctcgtc 365 |||||||||||||||||||| Sbjct: 37277 ccgccgccgccgtgctcgtc 37258
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 ccgcctcggctccgccgccgccgtgctc 362 ||||||| ||||||||||||||||||| Sbjct: 104537 ccgcctcccctccgccgccgccgtgctc 104510
>ref|NM_153083.2| Mus musculus thiamine triphosphatase (Thtpa), mRNA Length = 2824 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 1818 cacagcagcaggccctgaat 1799
>gb|BT014146.1| Lycopersicon esculentum clone 133265F, mRNA sequence Length = 1413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaagccaagaatgaattgcc 148 |||||||||||||||||||| Sbjct: 1134 aaagccaagaatgaattgcc 1115
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 68149 ccggcggcaccacccggagg 68168
>ref|XM_904306.2| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4062 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 1999 ccggcggcaccacccggagg 2018
>ref|XM_980881.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 2080 ccggcggcaccacccggagg 2099
>ref|XM_973126.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4083 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 2020 ccggcggcaccacccggagg 2039
>ref|XM_979704.1| PREDICTED: Mus musculus zinc finger protein 746 (Zfp746), mRNA Length = 4065 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 2002 ccggcggcaccacccggagg 2021
>ref|XM_538648.2| PREDICTED: Canis familiaris similar to GDNF family receptor alpha 3 preproprotein (LOC481527), mRNA Length = 1200 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ggacacagcagcaggccctg 169 |||||||||||||||||||| Sbjct: 653 ggacacagcagcaggccctg 634
>gb|AF432864.2| Mus musculus thiamine triphosphatase mRNA, complete cds Length = 2655 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 1664 cacagcagcaggccctgaat 1645
>emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chromosome 1q42.1-43, complete sequence Length = 132887 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gcccgcctcggctccgccgccgcc 356 ||||||||| |||||||||||||| Sbjct: 5320 gcccgcctcagctccgccgccgcc 5343
>emb|AL133334.16| Human DNA sequence from clone RP4-669F6 on chromosome 6p12.3-21.2, complete sequence Length = 107626 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cacagcctgctagttcttct 84 |||||||||||||||||||| Sbjct: 22137 cacagcctgctagttcttct 22118
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 ccttcttcgtgttgaggaagcggc 388 ||||||||||| |||||||||||| Sbjct: 267012 ccttcttcgtgctgaggaagcggc 266989
>gb|BC025562.1| Mus musculus thiamine triphosphatase, mRNA (cDNA clone MGC:38198 IMAGE:5322971), complete cds Length = 2824 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 1818 cacagcagcaggccctgaat 1799
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggcggccaggaggagccgct 234 |||||||||||||||||||| Sbjct: 1042823 ggcggccaggaggagccgct 1042804
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence Length = 193714 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 146431 ccggcggcaccacccggagg 146450
>dbj|AK132479.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732454L17 product:thiamine triphosphatase, full insert sequence Length = 2518 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 1526 cacagcagcaggccctgaat 1507
>dbj|AK156312.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016D04 product:Similar to zinc finger protein 398 homolog [Homo sapiens], full insert sequence Length = 3650 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccggcggcaccacccggagg 306 |||||||||||||||||||| Sbjct: 1589 ccggcggcaccacccggagg 1608
>dbj|AK085173.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430048O16 product:thiamine triphosphatase, full insert sequence Length = 2521 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 1530 cacagcagcaggccctgaat 1511
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcg 386 |||||||||||||||||||| Sbjct: 26381329 ttcttcgtgttgaggaagcg 26381348
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccgcctcggctccgccgccgccgt 358 |||||||||| ||||||||||||| Sbjct: 6902547 ccgcctcggcgccgccgccgccgt 6902570 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccgccgccgccgtgctcgtc 365 |||||||||||||||||||| Sbjct: 2585127 ccgccgccgccgtgctcgtc 2585146
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 cgcctcggctccgccgccgccgtg 359 |||||| ||||||||||||||||| Sbjct: 28792125 cgcctccgctccgccgccgccgtg 28792148
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 ccgcctcggctccgccgccgccgtgctc 362 ||||||| ||||||||||||||||||| Sbjct: 3783607 ccgcctcccctccgccgccgccgtgctc 3783580
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 6732115 cctcggctccgccgccgccg 6732134
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 tttgcccgcctcggctccgccgccgccg 357 |||||||||| |||| |||||||||||| Sbjct: 39599439 tttgcccgccgcggcgccgccgccgccg 39599412
>gb|BC096537.1| Mus musculus cDNA clone IMAGE:5704594 Length = 4262 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 3246 cacagcagcaggccctgaat 3227
>gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosome 14, complete sequence Length = 217099 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cacagcagcaggccctgaat 172 |||||||||||||||||||| Sbjct: 146455 cacagcagcaggccctgaat 146436
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 tttgcccgcctcggctccgccgccgccg 357 |||||||||| |||| |||||||||||| Sbjct: 80395 tttgcccgccgcggcgccgccgccgccg 80368
>ref|XM_222920.3| PREDICTED: Rattus norvegicus formin 2 (predicted) (Fmn2_predicted), mRNA Length = 4650 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 76 cctcggctccgccgccgccg 57
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 cgcctcggctccgccgccgccgtg 359 |||||| ||||||||||||||||| Sbjct: 99900 cgcctccgctccgccgccgccgtg 99923
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gctccgccgccgccgtgctc 362 |||||||||||||||||||| Sbjct: 20046 gctccgccgccgccgtgctc 20027
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 53168 cctcggctccgccgccgccg 53187
>dbj|AK120075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008L07, full insert sequence Length = 5516 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 tttgcccgcctcggctccgccgccgccg 357 |||||||||| |||| |||||||||||| Sbjct: 50 tttgcccgccgcggcgccgccgccgccg 77
>gb|AY375523.1| Crepidospermum prancei 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 5.8S ribosomal RNA gene, internal transcribed spacer 1, complete sequence; and 18S ribosomal RNA, partial sequence Length = 679 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 gcccctcgcccgccgcatcgcgtg 419 |||||||||||||||| ||||||| Sbjct: 578 gcccctcgcccgccgcgtcgcgtg 555
>ref|XM_320109.2| Anopheles gambiae str. PEST ENSANGP00000018351 (ENSANGG00000015862), partial mRNA Length = 1179 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gccgtgctcgtccttcttcg 373 |||||||||||||||||||| Sbjct: 438 gccgtgctcgtccttcttcg 419
>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full insert sequence Length = 990 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cctcggctccgccgccgccg 357 |||||||||||||||||||| Sbjct: 633 cctcggctccgccgccgccg 652
>dbj|AK073742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G24, full insert sequence Length = 1640 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ttcttcgtgttgaggaagcg 386 |||||||||||||||||||| Sbjct: 763 ttcttcgtgttgaggaagcg 744
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccgcctcggctccgccgccgccgt 358 |||||||||| ||||||||||||| Sbjct: 6969014 ccgcctcggcgccgccgccgccgt 6969037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccgccgccgccgtgctcgtc 365 |||||||||||||||||||| Sbjct: 2594158 ccgccgccgccgtgctcgtc 2594177
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcg 386 |||||||||||||||||||| Sbjct: 26309498 ttcttcgtgttgaggaagcg 26309517
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ttcttcgtgttgaggaagcg 386 |||||||||||||||||||| Sbjct: 95602 ttcttcgtgttgaggaagcg 95621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,398,458 Number of Sequences: 3902068 Number of extensions: 3398458 Number of successful extensions: 77986 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75762 Number of HSP's gapped (non-prelim): 2224 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
