ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 54 7e-04
2gb|AY136628.2| Petunia integrifolia subsp. inflata S2 self-incom... 46 0.17
3gb|AC151350.2| Xenopus tropicalis clone ISB-400N1, complete sequ... 44 0.67
4gb|AC148757.2| Medicago truncatula clone mth2-57e16, complete se... 44 0.67
5emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chro... 42 2.6
6gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Canc... 42 2.6
7gb|AC099034.1| Drosophila melanogaster, chromosome 2R, region 58... 42 2.6
8emb|AL772373.23| Zebrafish DNA sequence from clone CH211-143A22 ... 42 2.6
9gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome... 42 2.6
10dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.6
11gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64... 42 2.6
12gb|AC004368.1|AC004368 Drosophila melanogaster DNA sequence (P1 ... 42 2.6
13dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.6
14gb|DQ176853.1| Sus scrofa sialoadhesin mRNA, complete cds 42 2.6
15gb|DQ278064.1| Haliotis rubra clone Hrub3.E02 microsatellite seq... 42 2.6

>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 126   tttgctccctccctctcggccaccacgtgca 156
             |||||||||||||||| ||||||||||||||
Sbjct: 94772 tttgctccctccctcttggccaccacgtgca 94802



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>gb|AY136628.2| Petunia integrifolia subsp. inflata S2 self-incompatibility ribonuclease
              (S2-RNase) and S2-locus F-box protein (SLF2) genes,
              complete cds
          Length = 328473

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 147    accacgtgcacactttcttctac 169
              |||||||||||||||||||||||
Sbjct: 121705 accacgtgcacactttcttctac 121727



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>gb|AC151350.2| Xenopus tropicalis clone ISB-400N1, complete sequence
          Length = 88948

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 87    aaacatatattttgtttttcac 108
             ||||||||||||||||||||||
Sbjct: 14863 aaacatatattttgtttttcac 14884



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>gb|AC148757.2| Medicago truncatula clone mth2-57e16, complete sequence
          Length = 90963

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 89    acatatattttgtttttcacca 110
             ||||||||||||||||||||||
Sbjct: 16638 acatatattttgtttttcacca 16617



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>emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chromosome 16, complete
              sequence
          Length = 212227

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     ccaaaacaagcaaagtatgtg 52
              |||||||||||||||||||||
Sbjct: 111183 ccaaaacaagcaaagtatgtg 111163



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>gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 200359

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    caaaacatatattttgttttt 105
             |||||||||||||||||||||
Sbjct: 58175 caaaacatatattttgttttt 58155



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>gb|AC099034.1| Drosophila melanogaster, chromosome 2R, region 58B-58C, BAC clone
             BACR30O14, complete sequence
          Length = 186432

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    atatattttgtttttcaccaa 111
             |||||||||||||||||||||
Sbjct: 88122 atatattttgtttttcaccaa 88102



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>emb|AL772373.23| Zebrafish DNA sequence from clone CH211-143A22 in linkage group 14,
             complete sequence
          Length = 185265

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    atatattttgtttttcaccaa 111
             |||||||||||||||||||||
Sbjct: 26925 atatattttgtttttcaccaa 26945



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>gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome 16, complete sequence
          Length = 192492

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     ccaaaacaagcaaagtatgtg 52
              |||||||||||||||||||||
Sbjct: 179024 ccaaaacaagcaaagtatgtg 179004



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>dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2
          Length = 52232

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    aaaacatatattttgtttttc 106
             |||||||||||||||||||||
Sbjct: 31555 aaaacatatattttgtttttc 31575



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>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the
           complete sequence
          Length = 288451

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  atatattttgtttttcaccaa 111
           |||||||||||||||||||||
Sbjct: 900 atatattttgtttttcaccaa 880



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>gb|AC004368.1|AC004368 Drosophila melanogaster DNA sequence (P1 DS05295 (D64)), complete
             sequence
          Length = 89885

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    atatattttgtttttcaccaa 111
             |||||||||||||||||||||
Sbjct: 43185 atatattttgtttttcaccaa 43205



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>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
             complete sequence
          Length = 101752

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 212   taaatctgtgttatatatttc 232
             |||||||||||||||||||||
Sbjct: 94978 taaatctgtgttatatatttc 94998



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>gb|DQ176853.1| Sus scrofa sialoadhesin mRNA, complete cds
          Length = 5222

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 140  ctcggccaccacgtgcacactttct 164
            |||||||||||||||||||| ||||
Sbjct: 4353 ctcggccaccacgtgcacaccttct 4329



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>gb|DQ278064.1| Haliotis rubra clone Hrub3.E02 microsatellite sequence
          Length = 458

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 694 agataattgatgctcatgatc 714
           |||||||||||||||||||||
Sbjct: 188 agataattgatgctcatgatc 208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,759,661
Number of Sequences: 3902068
Number of extensions: 8759661
Number of successful extensions: 180924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180885
Number of HSP's gapped (non-prelim): 39
length of query: 762
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 739
effective length of database: 17,143,297,704
effective search space: 12668897003256
effective search space used: 12668897003256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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