ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR847978.17| Zebrafish DNA sequence from clone CH211-209D14 ... 44 0.31
2gb|AC007018.7| Arabidopsis thaliana chromosome 2 clone F5G3 map ... 44 0.31
3gb|AY740087.1| Ostreococcus tauri CONSTANS-like protein gene, co... 44 0.31
4gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.2
5ref|XM_473485.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
6gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
7ref|XM_387331.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.2
8emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chr... 42 1.2
9emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on c... 42 1.2
10emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
11dbj|D50659.1| Homo sapiens ACTGP9 pseudogene, gamma-actin mRNA-c... 42 1.2
12gb|AC012492.9| Homo sapiens BAC clone RP11-224B10 from 2, comple... 42 1.2
13ref|NG_001069.1| Homo sapiens actin, gamma pseudogene 9 (ACTGP9)... 42 1.2
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16gb|AC148345.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 42 1.2
17dbj|AK122063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
19ref|XM_483588.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
20gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 4.9
21ref|XM_705513.1| Candida albicans SC5314 putative U3 snoRNP prot... 40 4.9
22ref|XM_705499.1| Candida albicans SC5314 putative U3 snoRNP prot... 40 4.9
23gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosom... 40 4.9
24emb|AL772143.31| Zebrafish DNA sequence from clone CH211-158B22 ... 40 4.9
25emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA 40 4.9
26ref|XM_661129.1| Cryptosporidium hominis TU502 hypothetical prot... 40 4.9
27emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 4.9
28emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.9
29emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 4.9
30emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 4.9
31gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, com... 40 4.9
32gb|AE005919.1| Caulobacter crescentus CB15 section 245 of 359 of... 40 4.9
33gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
34gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
37gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 40 4.9
38gb|AC084537.1|CBRG26I17 Caenorhabditis briggsae cosmid G26I17, c... 40 4.9
39gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102... 40 4.9
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.9
41dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
42dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
43emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, B... 40 4.9
44gb|AY105027.1| Zea mays PCO081602 mRNA sequence 40 4.9
45gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 40 4.9
46gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, comp... 40 4.9
47gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 4.9
48emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.9
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
50emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, ... 40 4.9
51gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromoso... 40 4.9
52gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome... 40 4.9 
>emb|CR847978.17| Zebrafish DNA sequence from clone CH211-209D14 in linkage group 3,
             complete sequence
          Length = 194437

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   catttttcagaatatcgtttgt 132
             ||||||||||||||||||||||
Sbjct: 33451 catttttcagaatatcgtttgt 33430
to top
>gb|AC007018.7| Arabidopsis thaliana chromosome 2 clone F5G3 map RNS1, complete
            sequence
          Length = 124326

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 45   catcatcatcatctgctggtgg 66
            ||||||||||||||||||||||
Sbjct: 3126 catcatcatcatctgctggtgg 3147
to top
>gb|AY740087.1| Ostreococcus tauri CONSTANS-like protein gene, complete cds
          Length = 1475

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 254 cggcgcgcgcggcggccgtcgg 275
           ||||||||||||||||||||||
Sbjct: 61  cggcgcgcgcggcggccgtcgg 40
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 256     gcgcgcgcggcggccgtcggc 276
               |||||||||||||||||||||
Sbjct: 3173632 gcgcgcgcggcggccgtcggc 3173612
to top
>ref|XM_473485.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 accttcggcgcgcgcggcggc 269
           |||||||||||||||||||||
Sbjct: 438 accttcggcgcgcgcggcggc 418
to top
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    catcatcatcatctgctggtggtga 69
             |||||||||||||| ||||||||||
Sbjct: 65777 catcatcatcatcttctggtggtga 65753
to top
>ref|XM_387331.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07155.1)
            partial mRNA
          Length = 2034

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  tgcccaacatgcaatgccccc 163
            |||||||||||||||||||||
Sbjct: 1219 tgcccaacatgcaatgccccc 1239
to top
>emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chromosome 1 Contains the 3'
              end of the PEX14 gene for peroxisomal biogenesis factor 14,
              the 3' end of the gene for a novel protein (FLJ34970,
              FLJ20321, FLJ12223) and two CpG islands, complete sequence
          Length = 143285

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    ggcgcgcgcggcggccgtcgg 275
              |||||||||||||||||||||
Sbjct: 103551 ggcgcgcgcggcggccgtcgg 103531
to top
>emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on chromosome 6p11.2-21.1
            Contains the ENPP5 gene for ectonucleotide
            pyrophosphatase/phosphodiesterase 5 (putative function),
            the  ENPP4 gene for ectonucleotide
            pyrophosphatase/phosphodiesterase 4 (putative function)
            (NPP4, KIAA0879) and a novel gene, complete sequence
          Length = 126956

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 58   tgctggtggtgacgactgagc 78
            |||||||||||||||||||||
Sbjct: 4371 tgctggtggtgacgactgagc 4391
to top
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   accttcggcgcgcgcggcggc 269
             |||||||||||||||||||||
Sbjct: 54664 accttcggcgcgcgcggcggc 54684
to top
>dbj|D50659.1| Homo sapiens ACTGP9 pseudogene, gamma-actin mRNA-corresponding
           region
          Length = 2659

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 58  tgctggtggtgacgactgagc 78
           |||||||||||||||||||||
Sbjct: 204 tgctggtggtgacgactgagc 184
to top
>gb|AC012492.9| Homo sapiens BAC clone RP11-224B10 from 2, complete sequence
          Length = 183584

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   ataaatctcaaaagcttttat 237
             |||||||||||||||||||||
Sbjct: 65019 ataaatctcaaaagcttttat 64999
to top
>ref|NG_001069.1| Homo sapiens actin, gamma pseudogene 9 (ACTGP9) on chromosome 6
          Length = 2659

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 58  tgctggtggtgacgactgagc 78
           |||||||||||||||||||||
Sbjct: 204 tgctggtggtgacgactgagc 184
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 249      accttcggcgcgcgcggcggc 269
                |||||||||||||||||||||
Sbjct: 28047438 accttcggcgcgcgcggcggc 28047458
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 45       catcatcatcatctgctggtggtga 69
                |||||||||||||| ||||||||||
Sbjct: 26940810 catcatcatcatcttctggtggtga 26940786
to top
>gb|AC148345.3| Medicago truncatula chromosome 7 BAC clone mth2-14a16, complete
             sequence
          Length = 105328

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    ctcccttgtgcatcatcatca 55
             |||||||||||||||||||||
Sbjct: 31411 ctcccttgtgcatcatcatca 31391
to top
>dbj|AK122063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K11, full
           insert sequence
          Length = 1791

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 45  catcatcatcatctgctggtggtga 69
           |||||||||||||| ||||||||||
Sbjct: 346 catcatcatcatcttctggtggtga 322
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 45       catcatcatcatctgctggtggtga 69
                |||||||||||||| ||||||||||
Sbjct: 26868980 catcatcatcatcttctggtggtga 26868956
to top
>ref|XM_483588.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 43  tgcatcatcatcatctgctggtggtgacgactgagctcct 82
           |||||||||||||| | ||||||||||  || ||||||||
Sbjct: 177 tgcatcatcatcattttctggtggtgagtacggagctcct 138
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     ttcggcgcgcgcggcggccg 271
               ||||||||||||||||||||
Sbjct: 3126111 ttcggcgcgcgcggcggccg 3126092
to top
>ref|XM_705513.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30
           (CaO19.154), mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 45  catcatcatcatctgctggtggtg 68
           ||||||||||||||| ||||||||
Sbjct: 133 catcatcatcatctggtggtggtg 110
to top
>ref|XM_705499.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30
           (CaO19.7793), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 45  catcatcatcatctgctggtggtg 68
           ||||||||||||||| ||||||||
Sbjct: 133 catcatcatcatctggtggtggtg 110
to top
>gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosome 9, complete sequence
          Length = 187995

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ctgatatctgccgggagcct 359
              ||||||||||||||||||||
Sbjct: 155433 ctgatatctgccgggagcct 155452
to top
>emb|AL772143.31| Zebrafish DNA sequence from clone CH211-158B22 in linkage group 20,
             complete sequence
          Length = 73696

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tgcatcatcatcatctgctg 62
             ||||||||||||||||||||
Sbjct: 58835 tgcatcatcatcatctgctg 58816
to top
>emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA
          Length = 810

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 256 gcgcgcgcggcggccgtcggcagc 279
           |||||||||||||||| |||||||
Sbjct: 448 gcgcgcgcggcggccggcggcagc 471
to top
>ref|XM_661129.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20231)
            partial mRNA
          Length = 4281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  ttgtttccttggtttgccca 148
            ||||||||||||||||||||
Sbjct: 1531 ttgtttccttggtttgccca 1512
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 149     acatgcaatgcccccatctccttg 172
               ||||| ||||||||||||||||||
Sbjct: 1857237 acatgaaatgcccccatctccttg 1857214
to top
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ggcgcgcgcggcggccgtcg 274
              ||||||||||||||||||||
Sbjct: 200398 ggcgcgcgcggcggccgtcg 200417
to top
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ggcgcgcgcggcggccgtcg 274
              ||||||||||||||||||||
Sbjct: 112425 ggcgcgcgcggcggccgtcg 112444
to top
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ggcgcgcgcggcggccgtcg 274
             ||||||||||||||||||||
Sbjct: 33772 ggcgcgcgcggcggccgtcg 33791
to top
>gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    cccatctccttggttgctgcatcc 184
              ||||||||||||||||| ||||||
Sbjct: 151511 cccatctccttggttgcagcatcc 151488
to top
>gb|AE005919.1| Caulobacter crescentus CB15 section 245 of 359 of the complete genome
          Length = 12011

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   cgcgcgcggcggccgtcggc 276
             ||||||||||||||||||||
Sbjct: 11042 cgcgcgcggcggccgtcggc 11061
to top
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   gccgtcggcagcggggtcacaggg 291
             |||||||| |||||||||||||||
Sbjct: 33775 gccgtcgggagcggggtcacaggg 33752
to top
>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0034B05,
              complete sequence
          Length = 175061

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 268    gccgtcggcagcggggtcacaggg 291
              |||||||| |||||||||||||||
Sbjct: 148836 gccgtcgggagcggggtcacaggg 148813
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 268     gccgtcggcagcggggtcacaggg 291
               |||||||| |||||||||||||||
Sbjct: 3376991 gccgtcgggagcggggtcacaggg 3376968
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 43       tgcatcatcatcatctgctggtggtgacgactgagctcct 82
                |||||||||||||| | ||||||||||  || ||||||||
Sbjct: 27119244 tgcatcatcatcattttctggtggtgagtacggagctcct 27119283
to top
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
              BACR03K23, complete sequence
          Length = 160346

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     catcatcatcatctgctggtggtg 68
              ||||||| ||||||||||||||||
Sbjct: 145792 catcatcctcatctgctggtggtg 145815
to top
>gb|AC084537.1|CBRG26I17 Caenorhabditis briggsae cosmid G26I17, complete sequence
          Length = 19144

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tgcatcatcatcatctgctg 62
             ||||||||||||||||||||
Sbjct: 11050 tgcatcatcatcatctgctg 11069
to top
>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence
          Length = 143619

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   cccatctccttggttgctgcatcc 184
             ||||||||||||||||| ||||||
Sbjct: 23809 cccatctccttggttgcagcatcc 23786
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ggcgcgcgcggcggccgtcg 274
              ||||||||||||||||||||
Sbjct: 170974 ggcgcgcgcggcggccgtcg 170993
to top
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1521_G02
          Length = 117964

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 43    tgcatcatcatcatctgctggtggtgacgactgagctcct 82
             |||||||||||||| | ||||||||||  || ||||||||
Sbjct: 20277 tgcatcatcatcattttctggtggtgagtacggagctcct 20316
to top
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 43    tgcatcatcatcatctgctggtggtgacgactgagctcct 82
             |||||||||||||| | ||||||||||  || ||||||||
Sbjct: 90331 tgcatcatcatcattttctggtggtgagtacggagctcct 90370
to top
>emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14
          Length = 77720

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aataaatctcaaaagctttt 235
             ||||||||||||||||||||
Sbjct: 14292 aataaatctcaaaagctttt 14273
to top
>gb|AY105027.1| Zea mays PCO081602 mRNA sequence
          Length = 1570

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 141 tttgcccaacatgcaatgcccccatctccttggttg 176
           |||| |||||||||| |||  |||||||||||||||
Sbjct: 276 tttgtccaacatgcagtgcatccatctccttggttg 241
to top
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     catcatcatcatctgctggtggtg 68
              ||||||| ||||||||||||||||
Sbjct: 238135 catcatcctcatctgctggtggtg 238158
to top
>gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, complete sequence
          Length = 112924

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 ctgatatctgccgggagcct 359
           ||||||||||||||||||||
Sbjct: 492 ctgatatctgccgggagcct 511
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     ggcgcgcgcggcggccgtcg 274
               ||||||||||||||||||||
Sbjct: 2540338 ggcgcgcgcggcggccgtcg 2540357
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 258     gcgcgcggcggccgtcggcagcgg 281
               ||||||||| ||||||||||||||
Sbjct: 1531095 gcgcgcggccgccgtcggcagcgg 1531118
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 268     gccgtcggcagcggggtcacaggg 291
               |||||||| |||||||||||||||
Sbjct: 3376912 gccgtcgggagcggggtcacaggg 3376889
to top
>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence
          Length = 124954

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ttgctatctgacgcattttt 117
             ||||||||||||||||||||
Sbjct: 77653 ttgctatctgacgcattttt 77634
to top
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
             sequence
          Length = 242530

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   cggcgcgcgcggcggccgtc 273
             ||||||||||||||||||||
Sbjct: 74705 cggcgcgcgcggcggccgtc 74724
to top
>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence
          Length = 222867

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ccttgtgcatcatcatcatc 57
             ||||||||||||||||||||
Sbjct: 70780 ccttgtgcatcatcatcatc 70799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,355,221
Number of Sequences: 3902068
Number of extensions: 3355221
Number of successful extensions: 78560
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77670
Number of HSP's gapped (non-prelim): 890
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top