ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29m09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102F21, full insert sequence Length = 676 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 275 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 216 Query: 350 atggttcagttctt 363 ||||| || ||||| Sbjct: 215 atggtgcacttctt 202
>dbj|AK119565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A04, full insert sequence Length = 2048 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 1768 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 1709 Query: 350 atggttcagttctt 363 ||||| || ||||| Sbjct: 1708 atggtgcacttctt 1695
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 19017 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 19076 Query: 350 atggt 354 ||||| Sbjct: 19077 atggt 19081
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 8443864 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 8443923 Query: 350 atggt 354 ||||| Sbjct: 8443924 atggt 8443928
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 58819 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 58878 Query: 350 atggt 354 ||||| Sbjct: 58879 atggt 58883
>ref|NM_187889.1| Oryza sativa (japonica cultivar-group), Ozsa8331 predicted mRNA Length = 189 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 290 tgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatcttcgcc 349 ||||| |||| ||||||||| ||||| |||||||||| |||||||||||||| ||| ||| Sbjct: 62 tgagtggggctcttcttctgcttgctttgtgccagcagtgcctttggcttgaccttggcc 3 Query: 350 at 351 || Sbjct: 2 at 1
>gb|AY104882.1| Zea mays PCO112278 mRNA sequence Length = 671 Score = 61.9 bits (31), Expect = 1e-06 Identities = 103/127 (81%) Strand = Plus / Minus Query: 226 gtaaacggaggacactgctaggacgccgaggacgatgtaggtgacgatcctcaccaggcc 285 ||||||||||||||| | ||||||||||||| ||||||||||||||| | ||| || Sbjct: 391 gtaaacggaggacacgaccaggacgccgaggatcatgtaggtgacgatcgtggccacgct 332 Query: 286 gatctgagtagggcccttcttctgtttgctctgtgccagcaatgcctttggcttgatctt 345 ||| || ||| |||||||| ||||| || || ||||| ||||| ||||||||||| Sbjct: 331 gatttggccggggaccttcttcaccttgctttgcgcgagcaaggccttcggcttgatctt 272 Query: 346 cgccatg 352 ||||||| Sbjct: 271 cgccatg 265
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 165 cgccttctgctgctgctgccgcaacggccgg 195 |||||||||| |||||||||||||||||||| Sbjct: 204315 cgccttctgccgctgctgccgcaacggccgg 204345
>ref|XM_711497.1| Candida albicans SC5314 hypothetical protein (CaO19_7349), mRNA Length = 2256 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 110 caacaacagcaccaaaatcaaca 132 ||||||||||||||||||||||| Sbjct: 376 caacaacagcaccaaaatcaaca 398
>dbj|AB003310.1| Candida albicans DNA for chitin synthase regulatory factor, complete cds Length = 4533 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 110 caacaacagcaccaaaatcaaca 132 ||||||||||||||||||||||| Sbjct: 1195 caacaacagcaccaaaatcaaca 1217
>ref|XM_814520.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510303.260) partial mRNA Length = 1116 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 actgcgccttctgctgctgctgccgc 186 |||| ||||||||||||||||||||| Sbjct: 928 actgggccttctgctgctgctgccgc 953
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggc 192 |||||||||||||||||||||| Sbjct: 520820 ctgctgctgctgccgcaacggc 520799
>ref|NM_207993.1| Eremothecium gossypii AAR099Wp (AAR099W), mRNA Length = 1668 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggc 192 |||||||||||||||||||||| Sbjct: 337 ctgctgctgctgccgcaacggc 316
>dbj|AB062879.1| Bacillus sp. P-358 peh358 gene for polygalacturonase P358, complete cds Length = 3690 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 gaaaatacaacaacagcaccaa 124 |||||||||||||||||||||| Sbjct: 2308 gaaaatacaacaacagcaccaa 2329
>gb|AC022346.4| Drosophila melanogaster clone BACR22I24, complete sequence Length = 181052 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 gcctttggcttgatcttcgcc 349 ||||||||||||||||||||| Sbjct: 125528 gcctttggcttgatcttcgcc 125548
>ref|XM_639097.1| Dictyostelium discoideum GTP-binding nuclear protein Ran (DDB0229425), partial mRNA Length = 2265 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 109 acaacaacagcaccaaaatcaacagcatc 137 |||||||||||| ||| |||||||||||| Sbjct: 745 acaacaacagcatcaacatcaacagcatc 773
>gb|AY619532.1| Daphnia pulicaria clone WFms0000524 microsatellite marker Dp507 sequence Length = 249 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 109 acaacaacagcaccaaaatcaacagcatc 137 |||||||||||||||| | |||||||||| Sbjct: 187 acaacaacagcaccaacaacaacagcatc 215
>gb|AY601103.1| Trichoplusia ni beta 1,4-N-acetylgalactosaminyltransferase mRNA, complete cds Length = 1269 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 ctgcgccttctgctgctgctg 182 ||||||||||||||||||||| Sbjct: 25 ctgcgccttctgctgctgctg 45
>ref|XM_756749.1| Ustilago maydis 521 hypothetical protein (UM05695.1) partial mRNA Length = 2268 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gcgccttctgctgctgctgcc 184 ||||||||||||||||||||| Sbjct: 715 gcgccttctgctgctgctgcc 735
>gb|AC104269.1| Caenorhabditis briggsae cosmid CB047C11, complete sequence Length = 96428 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 27700 cctcacgaggccgatctgagtaggg 27724
>gb|AC099766.1| Caenorhabditis briggsae cosmid G05N03, complete sequence Length = 37121 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 4971 cctcacgaggccgatctgagtaggg 4995
>gb|AC022343.2|AC022343 Drosophila melanogaster, chromosome X, region 12E-12F, BAC clone BACR33F13, complete sequence Length = 164853 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 gcctttggcttgatcttcgcc 349 ||||||||||||||||||||| Sbjct: 140228 gcctttggcttgatcttcgcc 140208
>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence Length = 405682 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 109 acaacaacagcaccaaaatcaacagcatc 137 |||||||||||| ||| |||||||||||| Sbjct: 72693 acaacaacagcatcaacatcaacagcatc 72721
>gb|AC084632.1|CBRG45F18 Caenorhabditis briggsae cosmid G45F18, complete sequence Length = 30741 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 13667 cctcacgaggccgatctgagtaggg 13643
>gb|AC084578.1|CBRG39O07 Caenorhabditis briggsae cosmid G39O07, complete sequence Length = 23692 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 22706 cctcacgaggccgatctgagtaggg 22682
>gb|AC084509.1|CBRG15F12 Caenorhabditis briggsae cosmid G15F12, complete sequence Length = 22986 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 16491 cctcacgaggccgatctgagtaggg 16467
>gb|AC084460.1|AC084460 Caenorhabditis briggsae cosmid CB033D02, complete sequence Length = 77513 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 274 cctcaccaggccgatctgagtaggg 298 |||||| |||||||||||||||||| Sbjct: 25737 cctcacgaggccgatctgagtaggg 25713
>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185405 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 ccactgcgccttctgctgctgctgc 183 |||||||| |||||||||||||||| Sbjct: 129892 ccactgcgtcttctgctgctgctgc 129916
>gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 of 74 of the complete sequence Length = 299868 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 gcctttggcttgatcttcgcc 349 ||||||||||||||||||||| Sbjct: 82381 gcctttggcttgatcttcgcc 82361
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 ccactgcgccttctgctgctgctgc 183 |||||||| |||||||||||||||| Sbjct: 246937 ccactgcgtcttctgctgctgctgc 246961
>gb|AY022301.1| Oryza sativa microsatellite MRG4626 containing (AAG)X11, closest to marker S10742, genomic sequence Length = 233 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cttctgctgctgctgccgca 187 |||||||||||||||||||| Sbjct: 154 cttctgctgctgctgccgca 135
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctgctgctgctgccgca 187 |||||||||||||||||||| Sbjct: 129956 cttctgctgctgctgccgca 129975
>gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome y, complete sequence Length = 166756 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 acaacaacagcaccaaaatcaaca 132 |||| ||||||||||||||||||| Sbjct: 85162 acaaaaacagcaccaaaatcaaca 85185
>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence Length = 170684 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 100791 aaatacaacaacagcaccaa 100772
>ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase) (LOC526376), partial mRNA Length = 4672 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 gcgccttctgctgctgctgccgca 187 ||||||||| |||||||||||||| Sbjct: 1872 gcgccttctcctgctgctgccgca 1849
>gb|AC132332.2| Mus musculus BAC clone RP24-222H7 from chromosome 10, complete sequence Length = 155268 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tgtttgctctgtgccagcaa 327 |||||||||||||||||||| Sbjct: 25192 tgtttgctctgtgccagcaa 25173
>ref|XM_709580.1| Candida albicans SC5314 hypothetical protein (CaO19.6967), mRNA Length = 3393 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 atacaacaacagcaccaaaa 126 |||||||||||||||||||| Sbjct: 1691 atacaacaacagcaccaaaa 1710
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctgctgctgctgccgca 187 |||||||||||||||||||| Sbjct: 24754409 cttctgctgctgctgccgca 24754428
>ref|NM_001032462.1| Ciona intestinalis hedgehog homolog 1 (Hh1), mRNA Length = 2333 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gacaagaaaatacaacaaca 117 |||||||||||||||||||| Sbjct: 2214 gacaagaaaatacaacaaca 2195
>ref|XM_502474.1| Yarrowia lipolytica CLIB122, YALI0D06193g predicted mRNA Length = 1944 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 caacaacagcaccaaaatcaacagcatc 137 |||||||||||||| |||||||||||| Sbjct: 298 caacaacagcaccatcatcaacagcatc 325
>emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on chromosome 1 Contains a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene, the gene for a novel protein (FLJ37118, FLJ37833) and a cofilin 1 (non-muscle) (CFL1) pseudogene, complete sequence Length = 135992 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccttctgctgctgctgccgc 186 |||||||||||||||||||| Sbjct: 71201 ccttctgctgctgctgccgc 71182
>emb|BX088558.3| Mouse DNA sequence from clone RP23-252M5 on chromosome 4, complete sequence Length = 122069 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 308 tgtttgctctgtgccagcaatgcctttg 335 ||||| |||| ||||||||||||||||| Sbjct: 117238 tgttttctctctgccagcaatgcctttg 117211
>gb|AY119519.1| Drosophila melanogaster GH14582 full insert cDNA Length = 3705 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 293 aaatacaacaacagcaccaa 312
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctgctgctgctgccgca 187 |||||||||||||||||||| Sbjct: 49928 cttctgctgctgctgccgca 49947
>ref|NM_165836.1| Drosophila melanogaster Enhancer of Polycomb CG7776-RB, transcript variant B (E(Pc)), mRNA Length = 9307 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 5913 aaatacaacaacagcaccaa 5932
>ref|NM_164376.1| Drosophila melanogaster kismet CG3696-RB, transcript variant B (kis), mRNA Length = 8212 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 2497 ctgctgcagctgccgcaacggccg 2474
>ref|NM_078974.2| Drosophila melanogaster Enhancer of Polycomb CG7776-RA, transcript variant A (E(Pc)), mRNA Length = 9380 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 5986 aaatacaacaacagcaccaa 6005
>ref|NM_078717.2| Drosophila melanogaster kismet CG3696-RA, transcript variant A (kis), mRNA Length = 17918 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180
>gb|AY059438.1| Drosophila melanogaster GH05739 full length cDNA Length = 4039 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 283 aaatacaacaacagcaccaa 302
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 40852 ctgctgcagctgccgcaacggccg 40875
>gb|AC158544.1| Mus musculus 10 BAC RP24-212P21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152222 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tgtttgctctgtgccagcaa 327 |||||||||||||||||||| Sbjct: 75268 tgtttgctctgtgccagcaa 75249
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ttggcggcggaggaggacgg 386 |||||||||||||||||||| Sbjct: 17585802 ttggcggcggaggaggacgg 17585783
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctgctgctgctgccgca 187 |||||||||||||||||||| Sbjct: 24671239 cttctgctgctgctgccgca 24671258
>gb|AF215703.1|AF215703 Drosophila melanogaster KISMET-L long isoform (kis) mRNA, complete cds Length = 17424 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180
>gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Systems Mouse BAC Library) complete sequence Length = 157665 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 acaacaacagcaccaaaatcaaca 132 |||| ||||||||||||||||||| Sbjct: 7913 acaaaaacagcaccaaaatcaaca 7936
>emb|BX004832.9| Zebrafish DNA sequence from clone CH211-89M19, complete sequence Length = 190952 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agaaaatacaacaacagcac 121 |||||||||||||||||||| Sbjct: 54332 agaaaatacaacaacagcac 54313
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ttggcggcggaggaggacgg 386 |||||||||||||||||||| Sbjct: 62452 ttggcggcggaggaggacgg 62433
>gb|AF113847.1|AF113847 Drosophila melanogaster kismet (kis) mRNA, complete cds Length = 8238 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 2510 ctgctgcagctgccgcaacggccg 2487
>gb|AE003826.4| Drosophila melanogaster chromosome 2R, section 24 of 73 of the complete sequence Length = 310108 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 305379 aaatacaacaacagcaccaa 305398
>emb|AL132778.6|CNS01DTJ Human chromosome 14 DNA sequence BAC C-2568P8 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170125 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 aaaatacaacaacagcaccaaaat 127 ||||||||||||||||| |||||| Sbjct: 79040 aaaatacaacaacagcaacaaaat 79017
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 216830 ctgctgcagctgccgcaacggccg 216853
>gb|AF079764.1|AF079764 Drosophila melanogaster enhancer of polycomb (E(Pc)) mRNA, complete cds Length = 8601 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aaatacaacaacagcaccaa 124 |||||||||||||||||||| Sbjct: 5984 aaatacaacaacagcaccaa 6003
>dbj|AK113214.1| Ciona intestinalis cDNA, clone:ciad016g22, full insert sequence Length = 2333 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gacaagaaaatacaacaaca 117 |||||||||||||||||||| Sbjct: 2214 gacaagaaaatacaacaaca 2195
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ctgctgctgctgccgcaacggccg 194 ||||||| |||||||||||||||| Sbjct: 62924 ctgctgcagctgccgcaacggccg 62901
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 caacaacagcaccaaaatcaacagcatc 137 |||||||||||||| |||||||||||| Sbjct: 794621 caacaacagcaccatcatcaacagcatc 794648
>emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on chromosome 4, complete sequence Length = 174305 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tacaacaacagcaccaaaatcaac 131 ||||||||||||| |||||||||| Sbjct: 120883 tacaacaacagcagcaaaatcaac 120906
>emb|AL122057.4|CNS01DSZ Human chromosome 14 DNA sequence BAC R-246E14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163149 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 aaaatacaacaacagcaccaaaat 127 ||||||||||||||||| |||||| Sbjct: 15063 aaaatacaacaacagcaacaaaat 15040
>emb|AL671989.4| B.floridae DNA sequence from clone XX-BF17P53, complete sequence Length = 42326 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 ggacgccgaggacgatgtaggtgacgat 273 |||||||||||||||||| |||||||| Sbjct: 34441 ggacgccgaggacgatgtctgtgacgat 34414
>dbj|AB078508.1| Ciona intestinalis Ci-Hh1 mRNA for hedgehog homolog 1, complete cds Length = 2333 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gacaagaaaatacaacaaca 117 |||||||||||||||||||| Sbjct: 2214 gacaagaaaatacaacaaca 2195
>dbj|D38159.1| Bombyx mori mRNA for xanthine dehydrogenase, complete cds Length = 4260 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaaaaataaccgacaagaaaata 109 ||||| |||||||||||||||||| Sbjct: 305 ccaaatataaccgacaagaaaata 328
>dbj|AB005911.1| Bombyx mori DNA for xanthine dehydrogenase, partial and complete cds Length = 21115 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaaaaataaccgacaagaaaata 109 ||||| |||||||||||||||||| Sbjct: 10291 ccaaatataaccgacaagaaaata 10314
>dbj|AB060285.1| Bombyx mori BmXDH1 mRNA for truncated xanthine dehydrogenase, complete cds, mutant strain:oq Length = 4123 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ccaaaaataaccgacaagaaaata 109 ||||| |||||||||||||||||| Sbjct: 259 ccaaatataaccgacaagaaaata 282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,021,496 Number of Sequences: 3902068 Number of extensions: 4021496 Number of successful extensions: 112537 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112003 Number of HSP's gapped (non-prelim): 528 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
