ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190058.1| Oryza sativa (japonica cultivar-group), predic... 190 3e-45
2dbj|AK106484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
3dbj|AK061490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
4dbj|AK105604.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
7gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21... 44 0.49
8gb|BC067390.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cD... 42 1.9
9ref|NM_172615.1| Mus musculus RIKEN cDNA 1700021K19 gene (170002... 42 1.9
10gb|BC060601.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cD... 42 1.9
11gb|BC057307.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cD... 42 1.9
12emb|AL732604.5| Human DNA sequence from clone RP11-27G9 on chrom... 42 1.9
13gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 42 1.9
14dbj|AK136223.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 42 1.9
15dbj|AK171583.1| Mus musculus B6-derived CD11 +ve dendritic cells... 42 1.9
16dbj|AK170002.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.9
17dbj|AK170312.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.9
18dbj|AK170223.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.9
19emb|BX323076.9| Zebrafish DNA sequence from clone DKEY-106A24 in... 42 1.9
20dbj|AK042428.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.9
21dbj|AK030368.1| Mus musculus adult male pituitary gland cDNA, RI... 42 1.9
22gb|AF064958.1|AF064958 Coxiella burnetii unknown gene 42 1.9
23dbj|AK122221.1| Mus musculus mRNA for mKIAA0226 protein 42 1.9
24gb|AC116800.11| Mus musculus chromosome 8, clone RP24-335D17, co... 40 7.7
25gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 40 7.7
26gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Can... 40 7.7
27gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome... 40 7.7
28emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 i... 40 7.7
29emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
30emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in ... 40 7.7
31emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 i... 40 7.7
32gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete s... 40 7.7
33ref|NM_065007.1| Caenorhabditis elegans Y82E9BR.2 (Y82E9BR.2) mR... 40 7.7
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
35gb|AC016590.7| Homo sapiens chromosome 19 clone CTD-3220F14, com... 40 7.7
36dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
37gb|AF270223.1|AF270223 Staphylococcus epidermidis strain SR1 clo... 40 7.7
38gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, comple... 40 7.7
39gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 7.7
40emb|AL954232.2|RP43039B12 Pan troglodytes chromosome 22 BAC RP43... 40 7.7
41emb|AL954233.1|RP43116M22 Pan troglodytes chromosome 22 BAC RP43... 40 7.7
42gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Can... 40 7.7
43gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 7.7
44gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, comp... 40 7.7
45gb|AC139244.4| Mus musculus BAC clone RP23-324J8 from 16, comple... 40 7.7
46gb|AC132606.3| Mus musculus BAC clone RP23-434H18 from 8, comple... 40 7.7 
>ref|NM_190058.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2406

 Score =  190 bits (96), Expect = 3e-45
 Identities = 270/328 (82%)
 Strand = Plus / Minus

                                                                        
Query: 231  gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
            ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 2384 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 2325

                                                                        
Query: 291  ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
            ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 2324 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 2265

                                                                        
Query: 351  gccatctgtgcgatgttcgcgttgttgctctcccagaatgccatctcttccattttgcta 410
            |||||||| |||||| | ||||||||||||||||||||| |||| || ||  | || || 
Sbjct: 2264 gccatctgcgcgatgatggcgttgttgctctcccagaatcccatttcctcggtgttcctg 2205

                                                                        
Query: 411  gcatctatctggatcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatg 470
            |  ||||| |||||||| ||||| ||||| ||||||| | | ||||| ||| | ||||||
Sbjct: 2204 gggtctatttggatcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatg 2145

                                                                        
Query: 471  tcttgaaattccggagatgctttatcccccaccagcactacctgcttcctcgacgggaca 530
            ||  | ||||| |  ||| |||| | ||||||||| || ||||||||||| |||||||||
Sbjct: 2144 tcacggaattcagtcgattctttgttccccaccagaaccacctgcttcctggacgggaca 2085

                                        
Query: 531  gtgagcatgtctgctgcgcagcacatca 558
            |  ||||||||||| || || |||||||
Sbjct: 2084 gatagcatgtctgccgcacaacacatca 2057
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>dbj|AK106484.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G12, full
            insert sequence
          Length = 1700

 Score =  190 bits (96), Expect = 3e-45
 Identities = 270/328 (82%)
 Strand = Plus / Minus

                                                                        
Query: 231  gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
            ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 1315 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 1256

                                                                        
Query: 291  ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
            ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 1255 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 1196

                                                                        
Query: 351  gccatctgtgcgatgttcgcgttgttgctctcccagaatgccatctcttccattttgcta 410
            |||||||| |||||| | ||||||||||||||||||||| |||| || ||  | || || 
Sbjct: 1195 gccatctgcgcgatgatggcgttgttgctctcccagaatcccatttcctcggtgttcctg 1136

                                                                        
Query: 411  gcatctatctggatcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatg 470
            |  ||||| |||||||| ||||| ||||| ||||||| | | ||||| ||| | ||||||
Sbjct: 1135 gggtctatttggatcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatg 1076

                                                                        
Query: 471  tcttgaaattccggagatgctttatcccccaccagcactacctgcttcctcgacgggaca 530
            ||  | ||||| |  ||| |||| | ||||||||| || ||||||||||| |||||||||
Sbjct: 1075 tcacggaattcagtcgattctttgttccccaccagaaccacctgcttcctggacgggaca 1016

                                        
Query: 531  gtgagcatgtctgctgcgcagcacatca 558
            |  ||||||||||| || || |||||||
Sbjct: 1015 gatagcatgtctgccgcacaacacatca 988
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>dbj|AK061490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B04, full
           insert sequence
          Length = 1214

 Score =  190 bits (96), Expect = 3e-45
 Identities = 270/328 (82%)
 Strand = Plus / Minus

                                                                       
Query: 231 gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
           ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 945 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 886

                                                                       
Query: 291 ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
           ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 885 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 826

                                                                       
Query: 351 gccatctgtgcgatgttcgcgttgttgctctcccagaatgccatctcttccattttgcta 410
           |||||||| |||||| | ||||||||||||||||||||| |||| || ||  | || || 
Sbjct: 825 gccatctgcgcgatgatggcgttgttgctctcccagaatcccatttcctcggtgttcctg 766

                                                                       
Query: 411 gcatctatctggatcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatg 470
           |  ||||| |||||||| ||||| ||||| ||||||| | | ||||| ||| | ||||||
Sbjct: 765 gggtctatttggatcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatg 706

                                                                       
Query: 471 tcttgaaattccggagatgctttatcccccaccagcactacctgcttcctcgacgggaca 530
           ||  | ||||| |  ||| |||| | ||||||||| || ||||||||||| |||||||||
Sbjct: 705 tcacggaattcagtcgattctttgttccccaccagaaccacctgcttcctggacgggaca 646

                                       
Query: 531 gtgagcatgtctgctgcgcagcacatca 558
           |  ||||||||||| || || |||||||
Sbjct: 645 gatagcatgtctgccgcacaacacatca 618
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>dbj|AK105604.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A10, full
           insert sequence
          Length = 446

 Score =  155 bits (78), Expect = 2e-34
 Identities = 201/242 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
           ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 257 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 198

                                                                       
Query: 291 ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
           ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 197 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 138

                                                                       
Query: 351 gccatctgtgcgatgttcgcgttgttgctctcccagaatgccatctcttccattttgcta 410
           |||||||| |||||| | ||||||||||||||||||||| |||| || ||  | || || 
Sbjct: 137 gccatctgcgcgatgatggcgttgttgctctcccagaatcccatttcctcggtgttcctg 78

                                                                       
Query: 411 gcatctatctggatcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatg 470
           |  ||||| |||||||| ||||| ||||| ||||||| | | ||||| ||| | ||||||
Sbjct: 77  gggtctatttggatcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatg 18

             
Query: 471 tc 472
           ||
Sbjct: 17  tc 16
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                            
Query: 231      gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
                ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 41059690 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 41059749

                                                                            
Query: 291      ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
                ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 41059750 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 41059809

                                                            
Query: 351      gccatctgtgcgatgttcgcgttgttgctctcccagaatgccat 394
                |||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct: 41059810 gccatctgcgcgatgatggcgttgttgctctcccagaatcccat 41059853



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 109/135 (80%)
 Strand = Plus / Plus

                                                                            
Query: 424      tcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatgtcttgaaattccg 483
                |||| ||||| ||||| ||||||| | | ||||| ||| | ||||||||  | ||||| |
Sbjct: 41059974 tcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatgtcacggaattcag 41060033

                                                                            
Query: 484      gagatgctttatcccccaccagcactacctgcttcctcgacgggacagtgagcatgtctg 543
                  ||| |||| | ||||||||| || ||||||||||| ||||||||||  ||||||||||
Sbjct: 41060034 tcgattctttgttccccaccagaaccacctgcttcctggacgggacagatagcatgtctg 41060093

                               
Query: 544      ctgcgcagcacatca 558
                | || || |||||||
Sbjct: 41060094 ccgcacaacacatca 41060108



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 398      ttccattttgctagcatcta 417
                ||||||||||||||||||||
Sbjct: 21231259 ttccattttgctagcatcta 21231240
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>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492G09
          Length = 142239

 Score =  151 bits (76), Expect = 3e-33
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                         
Query: 231   gcagcagccaccgccttgttgagcagctcacggagcgcgcctggagaggtcaccggagga 290
             ||||| ||||| | ||||||||||||| | ||||| ||| ||| ||||||||||||||| 
Sbjct: 96620 gcagctgccactgtcttgttgagcagcacgcggagagcgtctgcagaggtcaccggaggg 96679

                                                                         
Query: 291   ctgcacttgaactcttggcacacatgtgccaccgctggcttccctgatgggctgctccgt 350
             ||||||||||| || ||||| || || ||||||||||||||| | | ||||||||| |||
Sbjct: 96680 ctgcacttgaagtcctggcagacgtgcgccaccgctggcttctccggtgggctgctacgt 96739

                                                         
Query: 351   gccatctgtgcgatgttcgcgttgttgctctcccagaatgccat 394
             |||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct: 96740 gccatctgcgcgatgatggcgttgttgctctcccagaatcccat 96783



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 109/135 (80%)
 Strand = Plus / Plus

                                                                         
Query: 424   tcacggttctgtttgggtcatatgacaagaatgcagcaacgaccatgtcttgaaattccg 483
             |||| ||||| ||||| ||||||| | | ||||| ||| | ||||||||  | ||||| |
Sbjct: 96904 tcacagttctatttggatcatatgtcgaaaatgcggcagcaaccatgtcacggaattcag 96963

                                                                         
Query: 484   gagatgctttatcccccaccagcactacctgcttcctcgacgggacagtgagcatgtctg 543
               ||| |||| | ||||||||| || ||||||||||| ||||||||||  ||||||||||
Sbjct: 96964 tcgattctttgttccccaccagaaccacctgcttcctggacgggacagatagcatgtctg 97023

                            
Query: 544   ctgcgcagcacatca 558
             | || || |||||||
Sbjct: 97024 ccgcacaacacatca 97038
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>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence
          Length = 101563

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 501   accagcactacctgcttcctcgacgggacagtgagcatgtctgctgcgcagcacatca 558
             |||||||| ||||| ||||||||||| |||| || ||| || || || ||||||||||
Sbjct: 77031 accagcacaacctgtttcctcgacggaacagagatcatatccgccgcacagcacatca 76974
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>gb|BC067390.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cDNA clone MGC:76451
            IMAGE:30432960), complete cds
          Length = 5267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2547 acagctgaacccgcagcagcc 2527
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>ref|NM_172615.1| Mus musculus RIKEN cDNA 1700021K19 gene (1700021K19Rik), mRNA
          Length = 5238

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2536 acagctgaacccgcagcagcc 2516
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>gb|BC060601.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cDNA clone MGC:79154
            IMAGE:5706123), complete cds
          Length = 5332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2580 acagctgaacccgcagcagcc 2560
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>gb|BC057307.1| Mus musculus RIKEN cDNA 1700021K19 gene, mRNA (cDNA clone
            IMAGE:5704785), partial cds
          Length = 5262

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2511 acagctgaacccgcagcagcc 2491
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>emb|AL732604.5| Human DNA sequence from clone RP11-27G9 on chromosome X Contains a SET
             translocation (myeloid leukemia-associated) (SET)
             pseudogene, complete sequence
          Length = 166517

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 495   tcccccaccagcactacctgcttcc 519
             |||||||||| ||||||||||||||
Sbjct: 33812 tcccccaccatcactacctgcttcc 33836
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 11      tttatttcgcccttttatttttata 35
               ||||||||| |||||||||||||||
Sbjct: 1873662 tttatttcggccttttatttttata 1873686
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>dbj|AK136223.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420483G13 product:Hypothetical
            serine-rich region/cysteine-rich region/RUN domain
            containing protein homolog [Mus musculus], full insert
            sequence
          Length = 2217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 1244 acagctgaacccgcagcagcc 1224
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>dbj|AK171583.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730313B22
            product:Hypothetical serine-rich region/cysteine-rich
            region/RUN domain containing protein, full insert
            sequence
          Length = 3125

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2546 acagctgaacccgcagcagcc 2526
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>dbj|AK170002.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630007F11
            product:Hypothetical serine-rich region/cysteine-rich
            region/RUN domain containing protein, full insert
            sequence
          Length = 3078

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2500 acagctgaacccgcagcagcc 2480
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>dbj|AK170312.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630045F11
            product:Hypothetical serine-rich region/cysteine-rich
            region/RUN domain containing protein homolog [Mus
            musculus], full insert sequence
          Length = 3330

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2751 acagctgaacccgcagcagcc 2731
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>dbj|AK170223.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630032M11
            product:Hypothetical serine-rich region/cysteine-rich
            region/RUN domain containing protein, full insert
            sequence
          Length = 5160

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2458 acagctgaacccgcagcagcc 2438
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>emb|BX323076.9| Zebrafish DNA sequence from clone DKEY-106A24 in linkage group 10,
             complete sequence
          Length = 156467

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 10    ttttatttcgcccttttatttttat 34
             |||||||| ||||||||||||||||
Sbjct: 23673 ttttattttgcccttttatttttat 23697
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>dbj|AK042428.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630091D15 product:hypothetical
            Serine-rich region/Cysteine-rich region/RUN domain
            containing protein, full insert sequence
          Length = 3078

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2500 acagctgaacccgcagcagcc 2480
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>dbj|AK030368.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330403K09 product:hypothetical
            Serine-rich region/Cysteine-rich region/RUN domain
            containing protein, full insert sequence
          Length = 5238

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2536 acagctgaacccgcagcagcc 2516
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>gb|AF064958.1|AF064958 Coxiella burnetii unknown gene
          Length = 489

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 11  tttatttcgcccttttatttttata 35
           ||||||||| |||||||||||||||
Sbjct: 355 tttatttcggccttttatttttata 379
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>dbj|AK122221.1| Mus musculus mRNA for mKIAA0226 protein
          Length = 5308

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  acagctgaacccgcagcagcc 239
            |||||||||||||||||||||
Sbjct: 2571 acagctgaacccgcagcagcc 2551
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>gb|AC116800.11| Mus musculus chromosome 8, clone RP24-335D17, complete sequence
          Length = 168912

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    acaaaacaagccttcctgca 66
             ||||||||||||||||||||
Sbjct: 18352 acaaaacaagccttcctgca 18333
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete
             sequence
          Length = 208709

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    atgcatgcacacaacaagtgtgtg 100
             |||||||||||||||| |||||||
Sbjct: 45707 atgcatgcacacaacatgtgtgtg 45730
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>gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 219585

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   cgggacagtgagcatgtctg 543
             ||||||||||||||||||||
Sbjct: 76124 cgggacagtgagcatgtctg 76143
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>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence
          Length = 231668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     atgcatgcacacaacaagtgtgtg 100
              |||||||||||||||| |||||||
Sbjct: 190550 atgcatgcacacaacatgtgtgtg 190573
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>emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 in linkage group 8,
              complete sequence
          Length = 177206

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    cagatctagccttgtatttt 125
              ||||||||||||||||||||
Sbjct: 145014 cagatctagccttgtatttt 144995
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>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08,
             complete sequence
          Length = 148860

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 22    cttttatttttatagtgtcatgtataca 49
             ||||| ||||||||||||||||| ||||
Sbjct: 29648 cttttttttttatagtgtcatgtctaca 29621
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>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8,
             complete sequence
          Length = 147399

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cagatctagccttgtatttt 125
             ||||||||||||||||||||
Sbjct: 40782 cagatctagccttgtatttt 40763
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>emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 in linkage group 8,
             complete sequence
          Length = 190936

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   cagatctagccttgtatttt 125
             ||||||||||||||||||||
Sbjct: 73895 cagatctagccttgtatttt 73914
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>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tgaactcttggcacacatgt 317
             ||||||||||||||||||||
Sbjct: 83586 tgaactcttggcacacatgt 83605
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>ref|NM_065007.1| Caenorhabditis elegans Y82E9BR.2 (Y82E9BR.2) mRNA, complete cds
          Length = 1593

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 tgaactcttggcacacatgt 317
           ||||||||||||||||||||
Sbjct: 330 tgaactcttggcacacatgt 349
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 22       cttttatttttatagtgtcatgtataca 49
                ||||| ||||||||||||||||| ||||
Sbjct: 31332842 cttttttttttatagtgtcatgtctaca 31332815
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>gb|AC016590.7| Homo sapiens chromosome 19 clone CTD-3220F14, complete sequence
          Length = 117899

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   actcttggcacacatgtgcc 320
             ||||||||||||||||||||
Sbjct: 57586 actcttggcacacatgtgcc 57605
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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1064G04
          Length = 186704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    ttccattttgctagcatcta 417
              ||||||||||||||||||||
Sbjct: 128768 ttccattttgctagcatcta 128749
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>gb|AF270223.1|AF270223 Staphylococcus epidermidis strain SR1 clone step.1055c01 genomic
            sequence
          Length = 4092

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  tgtttgggtcatatgacaag 452
            ||||||||||||||||||||
Sbjct: 3795 tgtttgggtcatatgacaag 3814
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>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence
          Length = 143947

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 484   gagatgctttatcccccaccagca 507
             ||||||||||||| ||||||||||
Sbjct: 58842 gagatgctttatctcccaccagca 58865
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    tgtttgggtcatatgacaag 452
              ||||||||||||||||||||
Sbjct: 684806 tgtttgggtcatatgacaag 684787
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>emb|AL954232.2|RP43039B12 Pan troglodytes chromosome 22 BAC RP43-039B12, complete sequence
          Length = 201761

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 402    attttgctagcatctatctggatcacgg 429
              ||||||| ||||||| ||||||||||||
Sbjct: 195910 attttgccagcatctctctggatcacgg 195883
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>emb|AL954233.1|RP43116M22 Pan troglodytes chromosome 22 BAC RP43-116M22, complete sequence
          Length = 163163

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 402   attttgctagcatctatctggatcacgg 429
             ||||||| ||||||| ||||||||||||
Sbjct: 81469 attttgccagcatctctctggatcacgg 81442
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>gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159189

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   cgggacagtgagcatgtctg 543
             ||||||||||||||||||||
Sbjct: 21260 cgggacagtgagcatgtctg 21241
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    tgtttgggtcatatgacaag 452
              ||||||||||||||||||||
Sbjct: 792293 tgtttgggtcatatgacaag 792274
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>gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, complete sequence
          Length = 164720

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttatttcgcccttttatttt 31
             ||||||||||||||||||||
Sbjct: 44513 ttatttcgcccttttatttt 44494
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>gb|AC139244.4| Mus musculus BAC clone RP23-324J8 from 16, complete sequence
          Length = 209201

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    acagctgaacccgcagcagc 238
              ||||||||||||||||||||
Sbjct: 118297 acagctgaacccgcagcagc 118316
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>gb|AC132606.3| Mus musculus BAC clone RP23-434H18 from 8, complete sequence
          Length = 215743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    acaaaacaagccttcctgca 66
             ||||||||||||||||||||
Sbjct: 49652 acaaaacaagccttcctgca 49671


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,855,279
Number of Sequences: 3902068
Number of extensions: 5855279
Number of successful extensions: 105190
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104974
Number of HSP's gapped (non-prelim): 216
length of query: 564
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 541
effective length of database: 17,143,297,704
effective search space: 9274524057864
effective search space used: 9274524057864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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