ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal29l15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105425.1| Zea mays PCO111089 mRNA sequence Length = 1048 Score = 250 bits (126), Expect = 5e-63 Identities = 219/250 (87%) Strand = Plus / Minus Query: 438 caggttggtcaagcccatttacaatgtaacttgctgttgtagcacccctgatggccatgt 497 |||||||||| || |||||||| |||| ||||||||||||| || ||||| ||||| | Sbjct: 717 caggttggtcgaggccatttacgatgtggtttgctgttgtagcccctctgatagccatat 658 Query: 498 tctctacaaaacgaatttcatcttcatggttgctcacaaacttcgtaagttccttggaca 557 | |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 657 tttctataaaacgaatttcatcttcatggctgctcacaaacttcgtaagttcctttgaca 598 Query: 558 aaatattcaggattctatcaatttttgcttgatgcttccggaaaaacgggcgcaggtatc 617 ||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||||||| Sbjct: 597 gaatattcagaaacctatcaatttttgcttgatgtttcaggaaaaatgggcgcaggtatc 538 Query: 618 ttctgtacacatgctttgatccaccatttgaaggaaactggagccatataaggacagcaa 677 || |||| |||||||||||||||| |||||||| ||||||||||| | ||||| ||||| Sbjct: 537 ttttgtatacatgctttgatccactgtttgaagggaactggagccacacaaggatagcaa 478 Query: 678 atttcgcatg 687 | ||| |||| Sbjct: 477 acttcacatg 468
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 545 agttccttggacaaaatattcaggattctatcaatttttgcttgatgcttccggaaaaac 604 |||||||| || | |||||| ||||||||||| |||||||||||||| ||| |||||||| Sbjct: 22792458 agttccttcgatagaatatttaggattctatcgatttttgcttgatgtttcaggaaaaac 22792517 Query: 605 gggcgcaggtatcttctgtacacatgctttg 635 || |||| || ||||| || |||||||||| Sbjct: 22792518 ggccgcatataccttctatatacatgctttg 22792548 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 471 ctgttgtagcacccctgatggccatgttctctacaaaacgaatttcatcttcatggttgc 530 |||||| |||||||||| |||||||| ||||| ||| | || |||||||||||| ||| Sbjct: 22792295 ctgttgaagcacccctggcggccatgtgctctatgaaatggatctcatcttcatggctgc 22792354 Query: 531 tcacaaactt 540 |||| ||||| Sbjct: 22792355 tcacgaactt 22792364 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 644 tttgaaggaaactggagcca 663 |||||||||||||||||||| Sbjct: 22793272 tttgaaggaaactggagcca 22793291
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 545 agttccttggacaaaatattcaggattctatcaatttttgcttgatgcttccggaaaaac 604 |||||||| || | |||||| ||||||||||| |||||||||||||| ||| |||||||| Sbjct: 111800 agttccttcgatagaatatttaggattctatcgatttttgcttgatgtttcaggaaaaac 111859 Query: 605 gggcgcaggtatcttctgtacacatgctttg 635 || |||| || ||||| || |||||||||| Sbjct: 111860 ggccgcatataccttctatatacatgctttg 111890 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 471 ctgttgtagcacccctgatggccatgttctctacaaaacgaatttcatcttcatggttgc 530 |||||| |||||||||| |||||||| ||||| ||| | || |||||||||||| ||| Sbjct: 111637 ctgttgaagcacccctggcggccatgtgctctatgaaatggatctcatcttcatggctgc 111696 Query: 531 tcacaaactt 540 |||| ||||| Sbjct: 111697 tcacgaactt 111706 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 644 tttgaaggaaactggagcca 663 |||||||||||||||||||| Sbjct: 112614 tttgaaggaaactggagcca 112633
>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human BAC Library) complete sequence Length = 171236 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 ggagttgaatttgggtcttcag 413 |||||||||||||||||||||| Sbjct: 119452 ggagttgaatttgggtcttcag 119473
>dbj|AK208658.1| Mus musculus cDNA, clone:Y2G0112F14, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000065379, based on BLAT search Length = 380 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tctggctcttctgttggagtt 397 ||||||||||||||||||||| Sbjct: 202 tctggctcttctgttggagtt 222
>gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, complete sequence Length = 187409 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 agagtgtttgggtaactttct 41 ||||||||||||||||||||| Sbjct: 33963 agagtgtttgggtaactttct 33983
>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence Length = 218283 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 catcttcatggttgctcacaa 536 ||||||||||||||||||||| Sbjct: 154738 catcttcatggttgctcacaa 154718
>gb|AC092470.9| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96100 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 attctatcaatttttgcttga 589 ||||||||||||||||||||| Sbjct: 67166 attctatcaatttttgcttga 67186
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 tctatcaatttttgcttgat 590 |||||||||||||||||||| Sbjct: 1031181 tctatcaatttttgcttgat 1031200
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 tctatcaatttttgcttgat 590 |||||||||||||||||||| Sbjct: 1032031 tctatcaatttttgcttgat 1032050
>ref|XM_873054.1| PREDICTED: Bos taurus similar to NF-kappa-B-repressing factor (NFKB-repressing factor) (Transcription factor NRF) (ITBA4 protein), transcript variant 2 (LOC540538), mRNA Length = 3291 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ctaatacaagtggacagtat 249 |||||||||||||||||||| Sbjct: 2345 ctaatacaagtggacagtat 2326
>ref|XM_611972.2| PREDICTED: Bos taurus similar to NF-kappa-B-repressing factor (NFKB-repressing factor) (Transcription factor NRF) (ITBA4 protein), transcript variant 1 (LOC540538), mRNA Length = 3731 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ctaatacaagtggacagtat 249 |||||||||||||||||||| Sbjct: 2785 ctaatacaagtggacagtat 2766
>gb|AC132371.2| Mus musculus BAC clone RP23-477D20 from chromosome 5, complete sequence Length = 193291 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cccacaaacttgtgctgcaa 199 |||||||||||||||||||| Sbjct: 19978 cccacaaacttgtgctgcaa 19997
>gb|AC079855.8| Homo sapiens BAC clone RP11-332L16 from 7, complete sequence Length = 143146 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 agtgtttgggtaactttctt 42 |||||||||||||||||||| Sbjct: 92963 agtgtttgggtaactttctt 92944
>gb|AC110524.11| Mus musculus chromosome 9, clone RP23-403L22, complete sequence Length = 225122 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggtggcaaccaagctcaggt 359 |||||||||||||||||||| Sbjct: 12802 ggtggcaaccaagctcaggt 12783
>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence Length = 192092 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 tacaaaacgaatttcatcttcatg 525 ||||||||||| |||||||||||| Sbjct: 105897 tacaaaacgaagttcatcttcatg 105874
>emb|BX324183.9| Human DNA sequence from clone WI2-83857E1 on chromosome 22, complete sequence Length = 16216 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 cttcatggttgctcacaaac 538 |||||||||||||||||||| Sbjct: 13869 cttcatggttgctcacaaac 13850
>emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on chromosome 13, complete sequence Length = 161317 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cttgttcagaaacacatatt 297 |||||||||||||||||||| Sbjct: 28750 cttgttcagaaacacatatt 28731
>emb|AL162272.10| Human DNA sequence from clone RP11-145E8 on chromosome 10 Contains a novel gene (KIAA1074), the 3' end of the YME1L1 gene for YME1-like 1 (S. cerevisiae) and a CpG island, complete sequence Length = 154904 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 gattctatcaatttttgctt 587 |||||||||||||||||||| Sbjct: 47255 gattctatcaatttttgctt 47274
>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland Research Institute) complete sequence Length = 218258 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gctcttctgttggagttgaa 400 |||||||||||||||||||| Sbjct: 97927 gctcttctgttggagttgaa 97908
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 tctctacaaaacgaatttca 517 |||||||||||||||||||| Sbjct: 161035 tctctacaaaacgaatttca 161016
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44 Length = 198735 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 tctctacaaaacgaatttca 517 |||||||||||||||||||| Sbjct: 138963 tctctacaaaacgaatttca 138944
>gb|AC090835.7| Homo sapiens chromosome 11, clone RP11-7O20, complete sequence Length = 167437 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 accaagctcaggtttcaact 366 |||||||||||||||||||| Sbjct: 158473 accaagctcaggtttcaact 158492
>gb|AC091155.5| Homo sapiens chromosome 17, clone CTD1-2306D4, complete sequence Length = 144430 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 gattctatcaatttttgctt 587 |||||||||||||||||||| Sbjct: 9743 gattctatcaatttttgctt 9762
>gb|AC008911.6| Homo sapiens chromosome 5 clone CTD-2268J5, complete sequence Length = 154963 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttggtcaagcccatttacaa 461 |||||||||||||||||||| Sbjct: 126904 ttggtcaagcccatttacaa 126885
>gb|AC018795.10| Homo sapiens chromosome 11, clone RP11-699C18, complete sequence Length = 187836 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 accaagctcaggtttcaact 366 |||||||||||||||||||| Sbjct: 147958 accaagctcaggtttcaact 147939
>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence Length = 165675 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ttggtcaagcccatttacaa 461 |||||||||||||||||||| Sbjct: 77798 ttggtcaagcccatttacaa 77817
>gb|AC020939.7| Homo sapiens chromosome 5 clone CTD-2311D2, complete sequence Length = 112595 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttggtcaagcccatttacaa 461 |||||||||||||||||||| Sbjct: 69622 ttggtcaagcccatttacaa 69603
>emb|BX284616.13| Zebrafish DNA sequence from clone DKEY-192I20 in linkage group 19, complete sequence Length = 223573 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ataaatgtgcatgtaacact 158 |||||||||||||||||||| Sbjct: 6144 ataaatgtgcatgtaacact 6163
>emb|BX546505.9| Mouse DNA sequence from clone RP23-220E8 on chromosome X, complete sequence Length = 165281 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 aacacatattcacatttcta 307 |||||||||||||||||||| Sbjct: 8706 aacacatattcacatttcta 8687
>dbj|D50640.2| Homo sapiens gene for phosphodiesterase 3B, complete cds Length = 6966 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 accaagctcaggtttcaact 366 |||||||||||||||||||| Sbjct: 5171 accaagctcaggtttcaact 5152
>emb|AL954704.10| Zebrafish DNA sequence from clone DKEY-110K21 in linkage group 7, complete sequence Length = 179095 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 atgaaaataaatgtgcatgt 152 |||||||||||||||||||| Sbjct: 13282 atgaaaataaatgtgcatgt 13301
>emb|BX322590.10| Mouse DNA sequence from clone RP23-14B5 on chromosome X, complete sequence Length = 223699 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 aacacatattcacatttcta 307 |||||||||||||||||||| Sbjct: 122643 aacacatattcacatttcta 122662
>dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, map 22, complete sequences Length = 161914 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 acacatattcacatttctaa 308 |||||||||||||||||||| Sbjct: 51658 acacatattcacatttctaa 51677
>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete sequences Length = 186185 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 acacatattcacatttctaa 308 |||||||||||||||||||| Sbjct: 181068 acacatattcacatttctaa 181087
>gb|AC002523.1|AC002523 Homo sapiens Xq28 BACs 360 F12, GSHB-555C13, complete sequence Length = 228516 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aatccaacagcgtatgaaaa 139 |||||||||||||||||||| Sbjct: 194713 aatccaacagcgtatgaaaa 194694
>emb|CR318628.8| Zebrafish DNA sequence from clone DKEY-148N22 in linkage group 19, complete sequence Length = 115655 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ataaatgtgcatgtaacact 158 |||||||||||||||||||| Sbjct: 36861 ataaatgtgcatgtaacact 36842
>dbj|AP000657.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-662K22, complete sequence Length = 51621 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 acacatattcacatttctaa 308 |||||||||||||||||||| Sbjct: 18696 acacatattcacatttctaa 18715
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105 Length = 340000 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 acacatattcacatttctaa 308 |||||||||||||||||||| Sbjct: 63068 acacatattcacatttctaa 63087
>emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 map Xq28, complete sequence Length = 161928 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aatccaacagcgtatgaaaa 139 |||||||||||||||||||| Sbjct: 71769 aatccaacagcgtatgaaaa 71750
>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence Length = 232568 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 tacaaaacgaatttcatcttcatg 525 ||||||||||| |||||||||||| Sbjct: 48939 tacaaaacgaagttcatcttcatg 48916
>emb|CT025575.12| Mouse DNA sequence from clone RP23-272A7 on chromosome 9, complete sequence Length = 232192 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggtggcaaccaagctcaggt 359 |||||||||||||||||||| Sbjct: 178780 ggtggcaaccaagctcaggt 178799
>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence Length = 194167 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 tacaaaacgaatttcatcttcatg 525 ||||||||||| |||||||||||| Sbjct: 84675 tacaaaacgaagttcatcttcatg 84652
>dbj|AB010579.1| Bombyx mori gene for xanthine dehydrogenase, partial cds Length = 18575 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 tcagaaacacatattcacatttct 306 |||||||||||| ||||||||||| Sbjct: 9914 tcagaaacacattttcacatttct 9891 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,086,717 Number of Sequences: 3902068 Number of extensions: 6086717 Number of successful extensions: 109323 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109124 Number of HSP's gapped (non-prelim): 199 length of query: 691 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 668 effective length of database: 17,143,297,704 effective search space: 11451722866272 effective search space used: 11451722866272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
