ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domai... 29 3.2
2MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai... 28 4.2
3AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Pro... 28 4.2
4AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor 28 4.2
5CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor... 27 9.4
6SDG41_ARATH (Q3ECY6) Protein SET DOMAIN GROUP 41 27 9.4
7ACBC_ACTS5 (Q9ZAE9) 2-epi-5-epi-valiolone synthase (EC 4.2.3.-) ... 27 9.4
8CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor... 27 9.4

>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2330

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 214 CRRAGSGNGEIKREKRRPSLLSQAVGLEPILGK*SSC 324
           C R G G G +K  +  P L SQ +  E  L   S C
Sbjct: 471 CSRRGRGRGALKNPEECPPLCSQRLTCEDCLANSSQC 507



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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 214 CRRAGSGNGEIKREKRRPSLLSQAVGLEPILGK*SSC 324
           C R G G G +K  +  P L SQ +  E  L   S C
Sbjct: 471 CSRRGRGRGALKSPEECPPLCSQRLTCEDCLANSSQC 507



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>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4)
          Length = 1217

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 335 RDHKQDDHFPRMGSRPTAWDSKDGRRFSRLISPLPDP 225
           +DH    H  R   R    DS   R+ S LIS LP P
Sbjct: 156 QDHLSQGHCSRKCDRRAEGDSAPERKLSPLISSLPSP 192



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>AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor|
          Length = 1216

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 347 CSSKRDHKQDDHFPRMGSRPTAWDSKDGRRFSRLISPLPDPA 222
           CS    H  D H+ R+ S  + +D   G+ F   + P+  PA
Sbjct: 666 CSWHTGHLTDAHWHRVKSHGSQYDHTTGQGFFMFLDPMDPPA 707



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>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth
            factor-like domains 2) (Epidermal growth factor-like 1)
          Length = 3312

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -1

Query: 225  CSSTW*LNVLMYCDVHD*LVASVIQFHILISFVHVVVTISIPSKQRDALSSLSRPSCKNK 46
            CS T    VLM     + L   +    +L  F HVVV +S+ +    A   LS  S K+ 
Sbjct: 2514 CSRTGTFGVLMDASPRERLEGDL---ELLAVFTHVVVAVSVAALVLTAAILLSLRSLKSN 2570

Query: 45   VR 40
            VR
Sbjct: 2571 VR 2572



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>SDG41_ARATH (Q3ECY6) Protein SET DOMAIN GROUP 41|
          Length = 558

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +1

Query: 112 CYNYMYKRYEYMELDYTRHKLIMNITIHQYIQSPCRRAGSGNG 240
           CY ++  R  Y ++  T  +   N+ + + +      +G+GNG
Sbjct: 185 CYRFVNNRTSYHDVHVTNTETSSNLELQEQVCGTSLNSGNGNG 227



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>ACBC_ACTS5 (Q9ZAE9) 2-epi-5-epi-valiolone synthase (EC 4.2.3.-)|
           (Sedo-heptulose 7-phosphate cyclase)
          Length = 382

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = -2

Query: 299 GSRPTAWDSK------DGRRFSRLISPLPDPALLHGD 207
           G+RP  W+S+       G  FS  I     PALLHG+
Sbjct: 256 GTRPNLWESRLERSVDYGHTFSPTIEMRALPALLHGE 292



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>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
          Length = 3301

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -1

Query: 225  CSSTW*LNVLMYCDVHD*LVASVIQFHILISFVHVVVTISIPSKQRDALSSLSRPSCKNK 46
            CS T    VLM     + L   +    +L  F HVVV +S+ +    A   LS  S K+ 
Sbjct: 2505 CSRTGTFGVLMDASPRERLEGDL---ELLAVFTHVVVAVSVTALVLTAAVLLSLRSLKSN 2561

Query: 45   VR 40
            VR
Sbjct: 2562 VR 2563


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,645,881
Number of Sequences: 219361
Number of extensions: 1036870
Number of successful extensions: 2563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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