| Clone Name | rbaal29j24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF479054.1| Triticum aestivum cytochrome reductase mRNA, partial cds Length = 348 Score = 101 bits (51), Expect = 5e-19 Identities = 94/110 (85%) Strand = Plus / Minus Query: 17 tcactcttggtggattatagaacatggaaattccaactgctgcgatnttggagaaagctc 76 |||||||||| |||||||||||||||||||||||||||||| || || || |||||| Sbjct: 348 tcactcttggcggattatagaacatggaaattccaactgctttgacatttgacaaagctt 289 Query: 77 cacctttagtatctgngggacagcttctnctgctncttgtaccacatcgc 126 ||| | ||||||||| |||||||| ||| ||||| |||||| ||||||| Sbjct: 288 cacatctagtatctgtgggacagcntctcctgctccttgtagtacatcgc 239
>gb|BT017053.1| Zea mays clone EL01N0354D06.c mRNA sequence Length = 530 Score = 52.0 bits (26), Expect = 4e-04 Identities = 38/43 (88%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgtaccacat 123 |||| |||||| |||| ||||||| ||||| |||||||||||| Sbjct: 298 tttaatatctgtgggaaagcttctcctgctccttgtaccacat 256
>gb|AY103678.1| Zea mays PCO101383 mRNA sequence Length = 637 Score = 52.0 bits (26), Expect = 4e-04 Identities = 38/43 (88%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgtaccacat 123 ||||||||||| |||| ||||||| ||||| ||||||||||| Sbjct: 397 tttagtatctgtgggaaagcttctcctgctctttgtaccacat 355
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 3866960 tttagtatctgtgggatagcttctcctgctccttgta 3866924 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 3828904 tttagtatctgtgggatagcttctcctgctccttgta 3828868
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 124914 tttagtatctgtgggatagcttctcctgctccttgta 124878 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 86858 tttagtatctgtgggatagcttctcctgctccttgta 86822
>dbj|AK120341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061B12, full insert sequence Length = 564 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 322 tttagtatctgtgggatagcttctcctgctccttgta 286
>dbj|AK119716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F09, full insert sequence Length = 552 Score = 48.1 bits (24), Expect = 0.007 Identities = 33/37 (89%) Strand = Plus / Minus Query: 81 tttagtatctgngggacagcttctnctgctncttgta 117 ||||||||||| |||| ||||||| ||||| |||||| Sbjct: 321 tttagtatctgtgggatagcttctcctgctccttgta 285
>emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chromosome X, complete sequence Length = 186544 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 attatagaacatggaaattc 49 |||||||||||||||||||| Sbjct: 46299 attatagaacatggaaattc 46280
>emb|AL023850.1|CEY67D11A Caenorhabditis elegans YAC Y67D11A, complete sequence Length = 12805 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 attatagaacatggaaatt 48 ||||||||||||||||||| Sbjct: 9620 attatagaacatggaaatt 9602
>emb|AL391688.1| Human DNA sequence from clone RP11-524D16 on chromosome X Contains the 3' end of the gene for sushi-repeat protein (SRPUL) and the 3' end of the SYTL4 gene for synaptotagmin-like 4 (granuphilin-a), complete sequence Length = 46229 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ggattatagaacatggaaa 46 ||||||||||||||||||| Sbjct: 20790 ggattatagaacatggaaa 20772
>emb|AL158217.25| Human DNA sequence from clone RP4-650H14 on chromosome 1p36.23-36.33 Contains the 3' end of the ESPN gene for espin, the TNFRSF25 gene for tumor necrosis factor receptor superfamily member 25, the gene for a novel PH domain-containing protein and four CpG islands, complete sequence Length = 53983 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gctccacctttagtatctg 91 ||||||||||||||||||| Sbjct: 30185 gctccacctttagtatctg 30203
>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland Research Institute) complete sequence Length = 216155 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gctccacctttagtatctg 91 ||||||||||||||||||| Sbjct: 114483 gctccacctttagtatctg 114501
>emb|BX005472.11| Zebrafish DNA sequence from clone CH211-119C22 in linkage group 11, complete sequence Length = 158170 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 tggattatagaacatggaa 45 ||||||||||||||||||| Sbjct: 136115 tggattatagaacatggaa 136133 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 736,647 Number of Sequences: 3902068 Number of extensions: 736647 Number of successful extensions: 38096 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38073 Number of HSP's gapped (non-prelim): 23 length of query: 134 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 113 effective length of database: 17,151,101,840 effective search space: 1938074507920 effective search space used: 1938074507920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)