>GILT_HUMAN (P13284) Gamma-interferon-inducible lysosomal thiol reductase|
           precursor (Gamma-interferon-inducible protein IP-30)
          Length = 261

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%)
 Frame = -2

Query: 565 PSLSWKCYNSEHGHKLSLKYGKQTDALVPPHKYVPWVVVDGEPLYEDYENFEAYVCKAYK 386
           P    +C   + G +L     ++TDAL PPH+YVPWV V+G+PL ED       VC+ Y+
Sbjct: 183 PDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQ 241

Query: 385 GHPPKIC 365
           G  P +C
Sbjct: 242 GKKPDVC 248

>YKJ2_CAEEL (P34276) Hypothetical protein C02D5.2|
          Length = 323

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 550 KCYNSEHGHKLSLKYGKQTDALVPPHKYVPWVVVDGEPLYEDYENFEAYVCKAYKGHP 377
           +C +   G +L    G++T +L P   ++PW+V++G    +   +    VC+A +  P
Sbjct: 255 ECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQPMP 312

>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix|
           protein 42) (bHLH42) (AtbHLH042)
          Length = 518

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 194 SHISV*ELRKETYNLSIAISRHHLNLVIELEIARVVGDTVAYLHHL 331
           SH+     R+E  N      R  +  V +++   ++GDT+AY++HL
Sbjct: 363 SHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHL 408

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +1

Query: 301  R*HRCLPPPPVVRLGSHGPALGKSWE------DGPCTPCRRKLQSSRNP--RRAARHQPP 456
            R HR  P P     G  GPA G   E       GP   C R+ +SS  P  R  ARH+ P
Sbjct: 941  RAHRHGPDP-----GKEGPASGTRGERRARHRTGP-RACPREAESSEEPARRHRARHKAP 994

Query: 457  PMERT 471
            P + T
Sbjct: 995  PTQET 999

>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = +1

Query: 367 KSWEDGPCTPCR--------RKLQSSRNPRRAARHQPPPMERTCAEAQ 486
           +S +DGPCTP R        RKLQS  +P       PPP E+  ++A+
Sbjct: 88  QSQQDGPCTPRRCLGSLVLPRKLQSRPSP------GPPPAEQLLSQAR 129

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 325 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 471
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 612 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 659

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 325 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 471
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 617 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 664

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 325 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 471
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 598 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 645

>CCL27_MOUSE (Q9Z1X0) Small inducible cytokine A27 precursor (CCL27) (CC|
           chemokine ILC) (IL-11 R-alpha-locus chemokine) (mILC)
           (ALP) (Skinkine) (ESkine) (Cutaneous T-cell attracting
           chemokine) (CTACK)
          Length = 120

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 246 PSADTILILSSSSKSPEL*VTPLPTSTTCCTIG*SRPSPWQIL 374
           P++   L+L   S +PE    PLP+ST+CCT    +P P ++L
Sbjct: 7   PASSLPLLLLLLSPAPEA-ALPLPSSTSCCTQLYRQPLPSRLL 48

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 325 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERTCAEAQ 486
           PP+ R  S  P   +     P  P RR   S ++ RR + H PPP +R+   A+
Sbjct: 591 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVS-HSPPPKQRSSPAAK 643



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 24/112 (21%)
 Frame = +1

Query: 247 HQPTPS*SCHRARNRQSCR*HRCLP-PPPVVRLGSHGPALGKSWEDGPCTPCRRK----- 408
           H  +PS S  + +   S R  R  P PPP  R  S  P         P  P RR      
Sbjct: 520 HSRSPSPSPRKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPSPPP 579

Query: 409 -------------LQSSRNP-----RRAARHQPPPMERTCAEAQVHQSVSHT 510
                        +Q   +P     RR A   PPP  R     Q  + VSH+
Sbjct: 580 RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHS 631

>TFR1_CHICK (Q90997) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)|
          Length = 776

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = -2

Query: 550 KCYNSEHGHKLSLKYGKQTDALVPPHKYVPWVVVDG-EPLYEDYENFEAYV-CKAYKGHP 377
           K +N EH  KL ++   +    +          ++G E + E  +   AY    +  G P
Sbjct: 189 KVWNDEHYIKLQVRGSTKNQVSIS---------INGKEEILETPDAIVAYSESGSVSGKP 239

Query: 376 PKICQGLGRDYPIVQQVVEVGNG--VTYNSGDFELDDKIKMVSADGN**IVCLLSELLY 206
             +  GL +D+ I+Q+VV   NG  V   +G   L +K+      G   ++  +  L+Y
Sbjct: 240 VYVNYGLKKDFEIIQKVVASLNGTIVIVRAGKITLAEKVANAKEAGAAGVLMYVDSLMY 298

>MT36_OCEIH (Q8EL95) Putative modification methylase OB3336 (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase) (M.OihORF3336P)
          Length = 460

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
 Frame = -2

Query: 511 KYGKQTDALVPPHKYVPWVVVDGE--------PLY-EDYENFEAYVCKAYKGHPPKICQG 359
           KY KQ +  +P      WV V           P+Y + Y+N++  + K YK  P    Q 
Sbjct: 235 KYYKQPN--IPDETLSDWVTVGDAIGDLPNLFPVYNQKYKNYKPMMMKEYKSPPQNTFQK 292

Query: 358 LGRDYPIVQQVVEVGNGVTYNSGDFELDDKIK 263
           L R    V +V   GN       DF + DK++
Sbjct: 293 LMRINNKVDKV--TGNMFRNTKRDFSIFDKME 322

>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 319 PPPPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERTCA 477
           PPPPV+R G+          D P  P   ++  S  P R     PPP  RT A
Sbjct: 327 PPPPVIRNGA---------RDAPPPPPPYRMHGSEPPSRG--KPPPPPSRTPA 368

>EMAL1_HUMAN (O00423) Echinoderm microtubule-associated protein-like 1 (EMAP-1)|
           (HuEMAP-1)
          Length = 717

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 171 RKMKLSYVHIYRYRSSERRHTIYQLPSADTILILSS 278
           +++KL +V  Y YR  + R+ +Y LP+ +T+  ++S
Sbjct: 121 KRLKLEWV--YGYRGRDCRNNLYLLPTGETVYFIAS 154

>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
 Frame = +1

Query: 352 GPALGKSWEDGPCTPCRRKLQSSRNP-------RRAARHQPPPM 462
           GP  G  W DGP  P     + S  P        R  R  PPP+
Sbjct: 175 GPRPGAGWTDGPGAPHGEAWRGSEQPDPPGGQRTRGVRQAPPPL 218

>Y400_MYCPN (P75383) Hypothetical protein MG281 homolog (F11_orf582)|
          Length = 582

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
 Frame = -2

Query: 460 WVVVDGEPLYEDYENFEAYVCKAYKGHPPKICQG-----------LGRDYPIVQQVVEVG 314
           + V +G PLY  Y N      K      P+I QG              DY I+  +   G
Sbjct: 232 YYVANGSPLYNVYPNHHFKQIKTIAFDAPRIKQGNTDGINLNLKQRNPDYVIINGL--TG 289

Query: 313 NGVTYNSGDFELDDKIKMVSADGN 242
           +G T    D EL + +K VS  G+
Sbjct: 290 DGSTLK--DLELPESVKKVSIYGD 311

>ATG18_CRYNE (Q5KGQ2) Autophagy-related protein 18|
          Length = 423

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
 Frame = +3

Query: 135 LVPMCISIINLNRKMKL----SYVHIYRYRSSERRHTIYQLPSADTILILSSSSKSPEL* 302
           + P  +  + +NRK  +    + ++IY   + +  HTI   P+ + +  LSSSS+   L 
Sbjct: 95  IFPTSVLAVKMNRKRLIVVLENEIYIYDISTMKLLHTIETGPNPNAVCALSSSSERSYLA 154

Query: 303 V-TPLPTSTTCCTIG*SRPSP 362
             +P+P++++      + P+P
Sbjct: 155 YPSPVPSASSTPLSSSAIPAP 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,608,354
Number of Sequences: 219361
Number of extensions: 1828974
Number of successful extensions: 5171
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5153
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)