ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX323824.17| Zebrafish DNA sequence from clone DKEY-37F18 in... 40 1.3
2gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, comple... 40 1.3
3gb|AE013054.1| Thermoanaerobacter tengcongensis MB4, section 81 ... 38 5.1
4gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, comp... 38 5.1
5emb|AL121776.19|HSJ1050K3 Human DNA sequence from clone RP5-1050... 38 5.1
6gb|AY065997.1| Thermoanaerobacter yonseiensis DNA polymerase (ta... 38 5.1
7emb|BX927172.5| Zebrafish DNA sequence from clone DKEY-158J20 in... 38 5.1
8emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chro... 38 5.1

>emb|BX323824.17| Zebrafish DNA sequence from clone DKEY-37F18 in linkage group 25,
              complete sequence
          Length = 168743

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 47     cttntgattcacattctccatgttttc 73
              ||| ||||| |||||||||||||||||
Sbjct: 133480 cttttgattgacattctccatgttttc 133454



to top

>gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, complete sequence
          Length = 192341

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    attcctttctgtgcacccattact 106
             ||||||||| ||||||||||||||
Sbjct: 98778 attcctttcagtgcacccattact 98755



to top

>gb|AE013054.1| Thermoanaerobacter tengcongensis MB4, section 81 of 244 of the
            complete genome
          Length = 10841

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   tcacattctccatgttttc 73
            |||||||||||||||||||
Sbjct: 6703 tcacattctccatgttttc 6685



to top

>gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, complete sequence
          Length = 202318

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 84    ttcctttctgtgcacccattact 106
             ||||||||||||| |||||||||
Sbjct: 83728 ttcctttctgtgctcccattact 83750



to top

>emb|AL121776.19|HSJ1050K3 Human DNA sequence from clone RP5-1050K3 on chromosome 20 Contains part
             of the EYA2 gene for eyes absent homolog 2 (Drosophila), a
             glyceraldehyde 3-phosphate dehydrogenase (GAPDH)
             pseudogene and an RPL27A (ribosomal protein L27A)
             pseudogene, complete sequence
          Length = 143981

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ttctgtgcacccattactt 107
             |||||||||||||||||||
Sbjct: 38894 ttctgtgcacccattactt 38876



to top

>gb|AY065997.1| Thermoanaerobacter yonseiensis DNA polymerase (tay) gene, complete
            cds
          Length = 3448

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   tcacattctccatgttttc 73
            |||||||||||||||||||
Sbjct: 2671 tcacattctccatgttttc 2653



to top

>emb|BX927172.5| Zebrafish DNA sequence from clone DKEY-158J20 in linkage group 5,
             complete sequence
          Length = 79111

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    tcattcctttctgtgcacc 99
             |||||||||||||||||||
Sbjct: 59867 tcattcctttctgtgcacc 59885



to top

>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete
              sequence
          Length = 244653

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     ttctgtgcacccattactt 107
              |||||||||||||||||||
Sbjct: 219172 ttctgtgcacccattactt 219190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 707,633
Number of Sequences: 3902068
Number of extensions: 707633
Number of successful extensions: 40346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40334
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top