>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2) (hSiah2)
          Length = 324

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 16  ANRPAKKNPHPQGTKKRREASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAAA 189
           AN+P  K P PQ       A+P     +S A P S  +  A A++ G GG     AG  +
Sbjct: 11  ANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGG--GGAGPVS 68

Query: 190 PRHHQV 207
           P+HH++
Sbjct: 69  PQHHEL 74

>PERC_AEDAE (P82600) Chorion peroxidase precursor (EC 1.11.1.7) [Contains:|
           Chorion peroxidase light chain; Chorion peroxidase heavy
           chain]
          Length = 791

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -3

Query: 408 DGKSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKP 229
           D   Q+  CM+ + C+ D  KK      +KPC +   +DG    CP+   N +S  V + 
Sbjct: 51  DACEQNEVCMAPIECILDAKKK----AILKPCSTVPSVDG--ICCPSSEHNGTSSRVQQS 104

Query: 228 TSGSSCANLMM 196
           +   +  +L++
Sbjct: 105 SEEHAADHLVL 115

>SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4|
          Length = 979

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
 Frame = -3

Query: 549 EAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVKKG-GLSKYYDGKSQSFACMSE 373
           E++ SD      P S P    NS  V    S +    + +  GLS Y  G + S A MSE
Sbjct: 111 ESRSSDSSVIVQPFSKPGYITNSSRVVSNKSSELLFDLTQDTGLSHYQGGPTLSMAGMSE 170

Query: 372 VRCLEDLPKKRPYN----KKMKPCRSHVEIDGDQRACP---APGSNNSSKVVAKPTSGSS 214
              L   P     N    KK KP  S V         P   +P   +S  ++AK T+ SS
Sbjct: 171 SSFLSKRPSTSEVNNVNPKKPKPSES-VSGANSSAVLPSVKSPSVTSSQAMLAKGTNTSS 229

>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2)
          Length = 325

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 16  ANRPAKKNPHPQGTKKRRE-ASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAA 186
           AN+P  K P P  T      A+P     +S A P S  +  A A++ G G      AG  
Sbjct: 11  ANKPCSKQPPPPQTPHAPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGAGG--GAGPV 68

Query: 187 APRHHQV 207
           +P+HH++
Sbjct: 69  SPQHHEL 75

>RS14B_STRCO (Q9X8K9) 30S ribosomal protein S14-2|
          Length = 101

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 241 SRQADLRELLRKPDD-GAERQLQHALQASRHPRQQERLPSVGREGSRLRLRVSVQGWLRV 65
           +R+A+L+E+LR+P    AER     L A R  R+Q R  S  R  +R ++    +G+LRV
Sbjct: 22  ARRAELKEVLRRPSSTEAER-----LAAQRELRRQPRDASPTRVRNRDQIDGRPRGYLRV 76

Query: 64  SSL 56
             L
Sbjct: 77  FGL 79

>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -3

Query: 474 VYDLSSIKAELSVKKGGLSKYYDGKS----QSFAC---MSEVRCLEDLPKKRPYNKKMKP 316
           +YD S +K E    + G+  +Y  ++    Q   C      VRC+ D+    P   +++ 
Sbjct: 20  LYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRK 79

Query: 315 CRSHVEIDGD 286
            +  +++DGD
Sbjct: 80  LKFAIKVDGD 89

>LY10_HUMAN (Q13342) Nuclear body protein SP140 (Nuclear autoantigen Sp-140)|
           (Speckled 140 kDa) (LYSp100 protein)
           (Lymphoid-restricted homolog of Sp100)
          Length = 882

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = -3

Query: 381 MSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANL 202
           M+ V  LED P+  PY K+      H   + D  A P    ++S++      S  SC  L
Sbjct: 145 MNNVNDLEDRPRLLPYGKQENSNACH---EMDDIAVPQEALSSSAR-CEPGFSSESCEQL 200

Query: 201 MMARSGSSSMLYRPPAIPVNKSAC 130
            + ++G       P  +P    +C
Sbjct: 201 ALPKAGGGDAEDAPSLLPGGGVSC 224

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 315  CRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANLMMAR 190
            C  H +ID  Q ACP      SS  ++ P+    C N +  R
Sbjct: 4914 CNQHCDIDRFQGACPTSPPPVSSAPLSSPSPAPGCDNAIPLR 4955

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = -3

Query: 513 PASPPARRLNSDGVYDLSSIKAELSVKKGGLSKYYDGKS----QSFAC---MSEVRCLED 355
           P +  A   N   +YD S +K E    + G+  +Y  ++    Q   C      VRCL D
Sbjct: 7   PETKSAAWWNYFFLYDGSKVKGEGDPTRAGICYFYPPQTLLDQQELLCGQLAGVVRCLWD 66

Query: 354 LPKKRPYNKKMKPCRSHVEIDGD 286
           L    P   +M+  +  +  DGD
Sbjct: 67  LSGTPPMLIRMRNLKFAIRADGD 89

>SPL3_ARATH (P93015) Squamosa promoter-binding-like protein 3|
          Length = 131

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -3

Query: 423 LSKYYDGKSQSFACMSEVR-CLEDLPKKRPYNKKMKPCR-----SHVEIDG-DQRAC 274
           L K   GK+ S + + +V  C  D+ K + Y+K+ K C+      HV I G  QR C
Sbjct: 39  LEKKQKGKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFC 95

>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2) (mSiah2)
          Length = 325

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 16  ANRPAKKNPHPQGTKKRRE-ASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAA 186
           AN+P  K P P  T      A+P     +S A P S  +  A A++ G G      A   
Sbjct: 11  ANKPCSKQPPPPQTPHAPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGAGG--GADPV 68

Query: 187 APRHHQV 207
           +P+HH++
Sbjct: 69  SPQHHEL 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,933,620
Number of Sequences: 219361
Number of extensions: 1358235
Number of successful extensions: 5619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5605
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)