ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29j08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 406 bits (205), Expect = e-110 Identities = 205/205 (100%) Strand = Plus / Minus Query: 1 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7729 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 7670 Query: 61 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7669 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 7610 Query: 121 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7609 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 7550 Query: 181 aagtaccttgctgtgctcctttacc 205 ||||||||||||||||||||||||| Sbjct: 7549 aagtaccttgctgtgctcctttacc 7525
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 406 bits (205), Expect = e-110 Identities = 205/205 (100%) Strand = Plus / Minus Query: 1 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1369 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggt 1310 Query: 61 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 aaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 1250 Query: 121 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 1190 Query: 181 aagtaccttgctgtgctcctttacc 205 ||||||||||||||||||||||||| Sbjct: 1189 aagtaccttgctgtgctcctttacc 1165
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 365 bits (184), Expect = 4e-98 Identities = 205/208 (98%), Gaps = 3/208 (1%) Strand = Plus / Minus Query: 1 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag-gtagg 59 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1678 gagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgtagg 1619 Query: 60 taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgtc 118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1618 taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtc 1559 Query: 119 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgg 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1558 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgg 1499 Query: 178 gcaaagtaccttgctgtgctcctttacc 205 |||||||||||||||||||||||||||| Sbjct: 1498 gcaaagtaccttgctgtgctcctttacc 1471
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 246 bits (124), Expect = 2e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 4 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 57 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 58 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 117 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 118 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 177 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 178 gcaaagtaccttgctgtgctcctttacc 205 ||||||||||||||||||| |||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 246 bits (124), Expect = 2e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 4 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 57 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 58 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 117 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 118 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 177 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 178 gcaaagtaccttgctgtgctcctttacc 205 ||||||||||||||||||| |||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 180 bits (91), Expect = 1e-42 Identities = 171/195 (87%), Gaps = 7/195 (3%) Strand = Plus / Minus Query: 18 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 71 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 72 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 130 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 131 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 190 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 191 ctgtgctcctttacc 205 |||||||||||||| Sbjct: 1413 ttgtgctcctttacc 1399
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 176 bits (89), Expect = 2e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 77 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 136 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 137 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 196 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 197 tcctttacc 205 ||||||||| Sbjct: 1369 tcctttacc 1361
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 104 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 163 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 164 accttccggcacggg 178 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 104 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 163 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 164 accttccggcacggg 178 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 104 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 163 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 164 accttccggcacggg 178 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 104 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 163 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 164 accttccggcacggg 178 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 2e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 9e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 92 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 151 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 152 ttggtcggtgcaaccttccggcacgggca 180 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 117 bits (59), Expect = 1e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 8e-19 Identities = 84/95 (88%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 1e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 1e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 86 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 145 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 146 ggcattttggtcggtgcaaccttccggcacgggca 180 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 96 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 155 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 156 tcggtgcaaccttc 169 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 96 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 155 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 156 tcggtgcaaccttc 169 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 96 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 155 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 156 tcggtgcaaccttc 169 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 96 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 155 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 156 tcggtgcaaccttc 169 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aaacatcagatattaaaagtg 82 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aaacatcagatattaaaagtg 82 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 aaacatcagatattaaaagtg 82 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tcagatattaaaagtggcat 86 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tcagatattaaaagtggcat 86 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tcagatattaaaagtggcat 86 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 ggtgtaaaggcagctgccgtcgtcgctc 122 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 aaacatgcccagcaatcgcttgga 38 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tggcatgcttaaaaggtgta 100 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 atcagatattaaaagtggcatgct 89 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,534,179 Number of Sequences: 3902068 Number of extensions: 1534179 Number of successful extensions: 108491 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108203 Number of HSP's gapped (non-prelim): 266 length of query: 207 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 185 effective length of database: 17,147,199,772 effective search space: 3172231957820 effective search space used: 3172231957820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
