| Clone Name | rbaal29i17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB257219.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Enchi Length = 2786 Score = 301 bits (152), Expect = 2e-78 Identities = 302/352 (85%) Strand = Plus / Minus Query: 207 cgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggt 266 ||||||||||||||| ||||| || |||||||||||||| |||||||| | ||||| || Sbjct: 2588 cgatcagaccatgtatgtcataccgacacgcatgatgtttgagtgaggaaccttcagtgt 2529 Query: 267 tgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaactt 326 ||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 2528 tgcagtgccagccctgcaattcctcctgaggaatgcatagaagtagttgatgataaactt 2469 Query: 327 ctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaa 386 ||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2468 cttcatgaagagcgattccttcctcgccctcacatcgccatgggccaagagatatgtgaa 2409 Query: 387 cccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttc 446 |||||||||||||||||| |||| || || |||||||||||||| | ||||||||||| Sbjct: 2408 cccagatgccatggcttctctcaaagctgccagctcgtactctaaaccagggtcttcttc 2349 Query: 447 tgcagacatggagctagagggtagcaaaggaacgctgccttccatgcccagcatttcatt 506 ||| ||||||||||| || || ||||| ||| | || |||||| || | |||| ||| Sbjct: 2348 tgcggacatggagctggatggaagcaatggagcactaccttccgtgttgaacattctatt 2289 Query: 507 gtcatcacccggtctctgatcagaaagcagtggagtgtgcagatcctcagca 558 ||||||| || |||||||||||||||||||||| |||||||||| ||||| Sbjct: 2288 gtcatcaaccaatctctgatcagaaagcagtggaacgtgcagatccccagca 2237 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 604 tcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcctca 661 ||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| Sbjct: 2194 tcacgctctgcctccattgtgctcgcctcgagcgcgatttcctgggcttccctcctca 2137 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 113 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 158 ||||||||||||||||||| ||||||| || || |||||||||||| Sbjct: 2664 gtacaatccctaaactaccagctggtgcagtatcccatccaagatg 2619
>dbj|AB257218.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2794 Score = 301 bits (152), Expect = 2e-78 Identities = 302/352 (85%) Strand = Plus / Minus Query: 207 cgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggt 266 ||||||||||||||| ||||| || |||||||||||||| |||||||| | ||||| || Sbjct: 2588 cgatcagaccatgtatgtcataccgacacgcatgatgtttgagtgaggaaccttcagtgt 2529 Query: 267 tgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaactt 326 ||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 2528 tgcagtgccagccctgcaattcctcctgaggaatgcatagaagtagttgatgataaactt 2469 Query: 327 ctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaa 386 ||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2468 cttcatgaagagcgattccttcctcgccctcacatcgccatgggccaagagatatgtgaa 2409 Query: 387 cccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttc 446 |||||||||||||||||| |||| || || |||||||||||||| | ||||||||||| Sbjct: 2408 cccagatgccatggcttctctcaaagctgccagctcgtactctaaaccagggtcttcttc 2349 Query: 447 tgcagacatggagctagagggtagcaaaggaacgctgccttccatgcccagcatttcatt 506 ||| ||||||||||| || || ||||| ||| | || |||||| || | |||| ||| Sbjct: 2348 tgcggacatggagctggatggaagcaatggagcactaccttccgtgttgaacattctatt 2289 Query: 507 gtcatcacccggtctctgatcagaaagcagtggagtgtgcagatcctcagca 558 ||||||| || |||||||||||||||||||||| |||||||||| ||||| Sbjct: 2288 gtcatcaaccaatctctgatcagaaagcagtggaacgtgcagatccccagca 2237 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 604 tcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcctca 661 ||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| Sbjct: 2194 tcacgctctgcctccattgtgctcgcctcgagcgcgatttcctgggcttccctcctca 2137 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 113 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 158 ||||||||||||||||||| ||||||| || || |||||||||||| Sbjct: 2664 gtacaatccctaaactaccagctggtgcagtatcccatccaagatg 2619
>ref|XM_450750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3085 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 2749 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 2690 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 2689 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 2630 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 2629 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 2570 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 2569 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 2510 Query: 442 tcttctg 448 ||||||| Sbjct: 2509 tcttctg 2503 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 2445 catcacccagcctctgatcagaaagcagtgga 2414
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 12609409 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 12609468 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 12609469 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 12609528 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 12609529 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 12609588 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 12609589 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 12609648 Query: 442 tcttctg 448 ||||||| Sbjct: 12609649 tcttctg 12609655 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Plus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 12609713 catcacccagcctctgatcagaaagcagtgga 12609744
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 75347 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 75406 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 75407 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 75466 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 75467 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 75526 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 75527 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 75586 Query: 442 tcttctg 448 ||||||| Sbjct: 75587 tcttctg 75593 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Plus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 75651 catcacccagcctctgatcagaaagcagtgga 75682
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 124736 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 124795 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 124796 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 124855 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 124856 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 124915 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 124916 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 124975 Query: 442 tcttctg 448 ||||||| Sbjct: 124976 tcttctg 124982 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Plus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 125040 catcacccagcctctgatcagaaagcagtgga 125071
>dbj|AK099766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095A12, full insert sequence Length = 4054 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 3748 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 3689 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 3688 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 3629 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 3628 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 3569 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 3568 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 3509 Query: 442 tcttctg 448 ||||||| Sbjct: 3508 tcttctg 3502 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 3444 catcacccagcctctgatcagaaagcagtgga 3413
>dbj|AK070831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063B21, full insert sequence Length = 3081 Score = 260 bits (131), Expect = 5e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 202 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 261 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 2745 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 2686 Query: 262 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 321 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 2685 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 2626 Query: 322 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 381 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 2625 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 2566 Query: 382 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 441 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 2565 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 2506 Query: 442 tcttctg 448 ||||||| Sbjct: 2505 tcttctg 2499 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 509 catcacccggtctctgatcagaaagcagtgga 540 |||||||| | ||||||||||||||||||||| Sbjct: 2441 catcacccagcctctgatcagaaagcagtgga 2410
>gb|AY106754.1| Zea mays PCO067360 mRNA sequence Length = 1181 Score = 244 bits (123), Expect = 3e-61 Identities = 228/263 (86%) Strand = Plus / Minus Query: 210 tcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggttgc 269 |||||||||||||||||| || ||||||||||||||||| || || | ||||| |||||| Sbjct: 884 tcagaccatgtacgtcataccaacacgcatgatgttcgaatgggggaccttcagggttgc 825 Query: 270 ggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaacttctt 329 ||||| ||||||||||||||||| ||||| || |||||||||||||||| ||||||||| Sbjct: 824 agtgcccgccctgcagttcctcctgaggaacgcatagaaatagttgatgacgaacttctt 765 Query: 330 tgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaaccc 389 ||||||| ||||| |||||||||||||||||| || ||||| | |||||| || ||||| Sbjct: 764 cgtgaagactgattccttcctcgccctcacatctccgtgtgctaggagatacgtaaaccc 705 Query: 390 agatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttctgc 449 ||| ||||||||||| ||||| || | |||||||||||||||| || ||||||||| Sbjct: 704 agaggccatggcttctctcagagcagacagctcgtactctaagccaggatcttcttctaa 645 Query: 450 agacatggagctagagggtagca 472 |||||||||||| ||||| |||| Sbjct: 644 agacatggagctggaggggagca 622 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 601 tcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcct 659 |||||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct: 496 tcatcacgctctgcctccattgtgctcgcctccagcgcaatttcctgggcttccctcct 438 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 519 tctctgatcagaaagcagtggagtgtgcag 548 |||||| ||||||||||||||||| ||||| Sbjct: 575 tctctggtcagaaagcagtggagtttgcag 546
>gb|AY111302.1| Zea mays CL24961_1 mRNA sequence Length = 637 Score = 69.9 bits (35), Expect = 1e-08 Identities = 38/39 (97%) Strand = Plus / Plus Query: 279 cctgcagttcctcctcaggaaagcgtagaaatagttgat 317 |||||||||||||||||||||||| |||||||||||||| Sbjct: 292 cctgcagttcctcctcaggaaagcatagaaatagttgat 330
>dbj|AB257217.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2484 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 208 gatcagaccatgtacgtcatccctacacgcatgatgttcgagtgagg 254 |||||||||||||| ||||| || |||||||||||||| |||||||| Sbjct: 2213 gatcagaccatgtatgtcataccgacacgcatgatgtttgagtgagg 2167 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 113 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 158 ||||||||||||||||||| |||||||||| || ||| |||||||| Sbjct: 2290 gtacaatccctaaactaccagctggtgtagtatcccacccaagatg 2245
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 279 cctgcagttcctcctcaggaaagcgtagaaatagttgat 317 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 19325595 cctgcagttcctcctcaagaaggcgtagaaatagttgat 19325633
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 279 cctgcagttcctcctcaggaaagcgtagaaatagttgat 317 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 15133 cctgcagttcctcctcaagaaggcgtagaaatagttgat 15171
>dbj|AK106582.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E03, full insert sequence Length = 1549 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 279 cctgcagttcctcctcaggaaagcgtagaaatagttgat 317 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1255 cctgcagttcctcctcaagaaggcgtagaaatagttgat 1217
>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1163_G04 Length = 106253 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 279 cctgcagttcctcctcaggaaagcgtagaaatagttgat 317 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 101821 cctgcagttcctcctcaagaaggcgtagaaatagttgat 101859
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 556 gcaggagcagcaggcgattgaa 577 |||||||||||||||||||||| Sbjct: 4188659 gcaggagcagcaggcgattgaa 4188680
>gb|AY485619.1| Cryphonectria parasitica DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 2889 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 aggcgcagccgagccccgatc 211 ||||||||||||||||||||| Sbjct: 63 aggcgcagccgagccccgatc 83
>ref|NM_202821.1| Arabidopsis thaliana unknown protein AT4G14905 transcript variant AT4G14905.2 mRNA, complete cds Length = 1572 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 670 atgaacttctttgtgatgaatgat 693
>ref|NM_179056.1| Arabidopsis thaliana unknown protein AT4G14905 transcript variant AT4G14905.1 mRNA, complete cds Length = 1382 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 677 atgaacttctttgtgatgaatgat 700
>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence Length = 192165 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 544 tgcagatcctcagcaggagcagca 567 ||||||||||| |||||||||||| Sbjct: 70889 tgcagatcctctgcaggagcagca 70866
>gb|AC133457.6| Mus musculus chromosome 3, clone RP24-493E2, complete sequence Length = 169824 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 544 tgcagatcctcagcaggagcagca 567 ||||||||||| |||||||||||| Sbjct: 169441 tgcagatcctctgcaggagcagca 169418
>ref|NM_011058.1| Mus musculus platelet derived growth factor receptor, alpha polypeptide (Pdgfra), mRNA Length = 6576 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 434 tggggtcttcttctgcagacatgg 457 |||||||||||||| ||||||||| Sbjct: 391 tggggtcttcttcttcagacatgg 368
>gb|AC121873.3| Mus musculus BAC clone RP24-123L3 from chromosome 19, complete sequence Length = 209035 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ccctgcagttcctcctcagg 297 |||||||||||||||||||| Sbjct: 141121 ccctgcagttcctcctcagg 141140
>gb|AC102352.9| Mus musculus chromosome 14, clone RP23-30H7, complete sequence Length = 248441 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tgccatggcttccctcagtg 412 |||||||||||||||||||| Sbjct: 190929 tgccatggcttccctcagtg 190948
>gb|BC004099.1| Mus musculus aminolevulinic acid synthase 1, mRNA (cDNA clone IMAGE:3594325) Length = 941 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gatgatgaacttctttgtgaagaa 338 ||||||||||||||||||| |||| Sbjct: 650 gatgatgaacttctttgtggagaa 673
>emb|AJ276865.1|STU276865 Solanum tuberosum partial ure gene for urease (allelic form 1), exons 5-18 Length = 11066 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgcagttcctcctcaggaaa 300 |||||||||||||||||||| Sbjct: 363 tgcagttcctcctcaggaaa 382
>emb|AJ276864.1|STU276864 Solanum tuberosum partial adk gene for putative adenylate kinase and ure gene for urease (allelic form 2) Length = 18962 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgcagttcctcctcaggaaa 300 |||||||||||||||||||| Sbjct: 6444 tgcagttcctcctcaggaaa 6463
>emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chromosome 7, complete sequence Length = 178646 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 tctgcctccattgcgctcacctca 633 |||||||||||||||| ||||||| Sbjct: 104092 tctgcctccattgcgcacacctca 104115
>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914 ~complete genomic sequence, complete sequence Length = 161580 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 124345 tgatgaacttctttgtgaag 124364
>ref|XM_807160.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506637.50) partial mRNA Length = 2391 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gatgaacttctttgtgaaga 337 |||||||||||||||||||| Sbjct: 1559 gatgaacttctttgtgaaga 1540
>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence Length = 166928 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 6979 tgatgaacttctttgtgaag 6998
>emb|AL672032.6| Human DNA sequence from clone RP11-308B5 on chromosome X Contains a novel gene, the 5' end of the PLAC1 gene for placenta-specific 1, a ribosomal protein L21 (RPL21) pseudogene, a ribosomal protein S7 (RPS7) pseudogene and the 3' end of the LOC169090 gene, complete sequence Length = 209317 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 tcagaaagcagtggagtgtg 545 |||||||||||||||||||| Sbjct: 80821 tcagaaagcagtggagtgtg 80840
>gb|AY152836.1| Felis catus clone BAC 160a17 major histocompatiblity complex classical class II region, partial sequence Length = 130898 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 agcattccatccaagatgag 160 |||||||||||||||||||| Sbjct: 121714 agcattccatccaagatgag 121733
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2 Length = 202860 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 92395 atgaacttctttgtgatgaatgat 92372
>gb|AC160997.5| Mus musculus BAC clone RP23-68E4 from chromosome 9, complete sequence Length = 179142 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tgccatggcttccctcagtg 412 |||||||||||||||||||| Sbjct: 40819 tgccatggcttccctcagtg 40800
>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence Length = 161261 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 88148 tgatgaacttctttgtgaag 88167
>gb|BC022110.1| Mus musculus aminolevulinic acid synthase 1, mRNA (cDNA clone MGC:36195 IMAGE:5133249), complete cds Length = 2142 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gatgatgaacttctttgtgaagaa 338 ||||||||||||||||||| |||| Sbjct: 1839 gatgatgaacttctttgtggagaa 1862
>gb|AC068050.6| Homo sapiens BAC clone RP11-240E2 from 9, complete sequence Length = 152747 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 cccagatgccatggcttccctcag 410 ||||||| |||||||||||||||| Sbjct: 96541 cccagatcccatggcttccctcag 96518
>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence Length = 107932 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 3934 tgatgaacttctttgtgaag 3953
>emb|BX828408.1|CNS0A3RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1453 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 619 atgaacttctttgtgatgaatgat 642
>emb|BX828137.1|CNS0A3TK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1545 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 643 atgaacttctttgtgatgaatgat 666
>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence Length = 196550 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 81422 tgatgaacttctttgtgaag 81403
>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence Length = 185339 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 181406 tgatgaacttctttgtgaag 181387
>gb|BT005320.1| Arabidopsis thaliana At4g14905 mRNA, complete cds Length = 1119 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 670 atgaacttctttgtgatgaatgat 693
>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence Length = 167832 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 64714 tgatgaacttctttgtgaag 64733
>ref|XM_214340.3| PREDICTED: Rattus norvegicus NIMA (never in mitosis gene a)-related expressed kinase 1 (predicted) (Nek1_predicted), mRNA Length = 4224 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 gttcctgggcttccctcctc 660 |||||||||||||||||||| Sbjct: 1917 gttcctgggcttccctcctc 1898
>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence Length = 221622 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 151366 tgatgaacttctttgtgaag 151347
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aacttctttgtgaagaatga 341 |||||||||||||||||||| Sbjct: 2674389 aacttctttgtgaagaatga 2674370
>dbj|AK117987.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-19-C01 Length = 1381 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 677 atgaacttctttgtgatgaatgat 700
>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence Length = 182046 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 64714 tgatgaacttctttgtgaag 64733
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40 Length = 197405 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 atgaacttctttgtgaagaatgat 342 |||||||||||||||| ||||||| Sbjct: 37849 atgaacttctttgtgatgaatgat 37826
>ref|NM_020559.1| Mus musculus aminolevulinic acid synthase 1 (Alas1), mRNA Length = 2142 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gatgatgaacttctttgtgaagaa 338 ||||||||||||||||||| |||| Sbjct: 1839 gatgatgaacttctttgtggagaa 1862
>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence Length = 184294 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 37560 tgatgaacttctttgtgaag 37541
>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence Length = 161397 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgatgaacttctttgtgaag 336 |||||||||||||||||||| Sbjct: 128678 tgatgaacttctttgtgaag 128697
>gb|AC157945.2| Mus musculus BAC clone RP23-289C11 from chromosome 9, complete sequence Length = 216396 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tgccatggcttccctcagtg 412 |||||||||||||||||||| Sbjct: 35340 tgccatggcttccctcagtg 35359
>emb|AL663117.14| Mouse DNA sequence from clone RP23-217A20 on chromosome 11, complete sequence Length = 148291 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tgccatggcttccctcagtg 412 |||||||||||||||||||| Sbjct: 88307 tgccatggcttccctcagtg 88288
>gb|M63245.1|MUSALASH Mus musculus amino levulinate synthase (ALAS-H) mRNA, 3' end Length = 1448 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gatgatgaacttctttgtgaagaa 338 ||||||||||||||||||| |||| Sbjct: 1190 gatgatgaacttctttgtggagaa 1213
>emb|AL358432.11| Human DNA sequence from clone RP11-18E18 on chromosome 9, complete sequence Length = 92398 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 cccagatgccatggcttccctcag 410 ||||||| |||||||||||||||| Sbjct: 77926 cccagatcccatggcttccctcag 77903
>gb|M84607.1|MUSPDGFAR Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRNA, complete cds Length = 6576 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 434 tggggtcttcttctgcagacatgg 457 |||||||||||||| ||||||||| Sbjct: 391 tggggtcttcttcttcagacatgg 368
>gb|M57683.1|MUSMPDGAA M.musculus PDGF alpha receptor (mPDGF-alpha-R) mRNA, complete cds Length = 3564 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 434 tggggtcttcttctgcagacatgg 457 |||||||||||||| ||||||||| Sbjct: 280 tggggtcttcttcttcagacatgg 257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,553,776 Number of Sequences: 3902068 Number of extensions: 5553776 Number of successful extensions: 104518 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104287 Number of HSP's gapped (non-prelim): 229 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)