| Clone Name | rbaal29i08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 464 bits (234), Expect = e-127 Identities = 387/438 (88%) Strand = Plus / Minus Query: 263 tggagcatagcaatcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaa 322 |||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||| Sbjct: 1266 tggagcatagcaatcagaacatcttaccagttccatctttgcgtggaacagattcttcaa 1207 Query: 323 gatccattctgcgccagctcccagccaaagatgacatctgatcaaccttgtcatacaacc 382 |||||||||||||||| |||||| ||||||||| | || ||||||||| |||||||| | Sbjct: 1206 gatccattctgcgccaactcccactcaaagatgataactcatcaaccttatcatacaaac 1147 Query: 383 caagaagaccgcctgtgtggacaaagaggactttccgcccattccacttggaaggattag 442 |||||||||| ||||| || ||||| || | ||| ||||| | |||||| | ||||||| Sbjct: 1146 caagaagaccacctgtatgtacaaaaagaatttttcgcccttcccacttagctggattag 1087 Query: 443 cagccatgtctttcagcattgcatatgctcccttcccactgtagactggatcaagcacaa 502 || ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||| Sbjct: 1086 cacccatgtctttcagcattccatatgctgcctttccactgtagactggatcaaggacaa 1027 Query: 503 tgcctgttgctgcagctatatctttaacaaacttaagctcctcagctgtgttcatggcat 562 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1026 tgcctgttgctgtagctatatctttaacaaacttaagctcctcagctgtgttcatggcat 967 Query: 563 aacctaagcccttagcattttgaatgctgactatatcatgtgagtccaagccagattgta 622 ||||||||||||||||||||| |||| |||||| ||||||||| ||| |||| || | Sbjct: 966 aacctaagcccttagcattttcaatgttgactaaatcatgtgaacgcaaatcagaatgaa 907 Query: 623 gtccatcaatcaggccttgaacataatcatagaagtattcagggtcatcgcaaacagaga 682 |||||||||||||| |||||||||| || ||| ||| |||| ||||| |||||||||| Sbjct: 906 gtccatcaatcaggtcttgaacataggaatggaaatatccaggatcatcacaaacagaga 847 Query: 683 atgcatggacttttgcct 700 | |||||||||||||||| Sbjct: 846 aagcatggacttttgcct 829
>dbj|AK071811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113F04, full insert sequence Length = 1417 Score = 464 bits (234), Expect = e-127 Identities = 387/438 (88%) Strand = Plus / Minus Query: 263 tggagcatagcaatcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaa 322 |||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||| Sbjct: 1265 tggagcatagcaatcagaacatcttaccagttccatctttgcgtggaacagattcttcaa 1206 Query: 323 gatccattctgcgccagctcccagccaaagatgacatctgatcaaccttgtcatacaacc 382 |||||||||||||||| |||||| ||||||||| | || ||||||||| |||||||| | Sbjct: 1205 gatccattctgcgccaactcccactcaaagatgataactcatcaaccttatcatacaaac 1146 Query: 383 caagaagaccgcctgtgtggacaaagaggactttccgcccattccacttggaaggattag 442 |||||||||| ||||| || ||||| || | ||| ||||| | |||||| | ||||||| Sbjct: 1145 caagaagaccacctgtatgtacaaaaagaatttttcgcccttcccacttagctggattag 1086 Query: 443 cagccatgtctttcagcattgcatatgctcccttcccactgtagactggatcaagcacaa 502 || ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||| Sbjct: 1085 cacccatgtctttcagcattccatatgctgcctttccactgtagactggatcaaggacaa 1026 Query: 503 tgcctgttgctgcagctatatctttaacaaacttaagctcctcagctgtgttcatggcat 562 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1025 tgcctgttgctgtagctatatctttaacaaacttaagctcctcagctgtgttcatggcat 966 Query: 563 aacctaagcccttagcattttgaatgctgactatatcatgtgagtccaagccagattgta 622 ||||||||||||||||||||| |||| |||||| ||||||||| ||| |||| || | Sbjct: 965 aacctaagcccttagcattttcaatgttgactaaatcatgtgaacgcaaatcagaatgaa 906 Query: 623 gtccatcaatcaggccttgaacataatcatagaagtattcagggtcatcgcaaacagaga 682 |||||||||||||| |||||||||| || ||| ||| |||| ||||| |||||||||| Sbjct: 905 gtccatcaatcaggtcttgaacataggaatggaaatatccaggatcatcacaaacagaga 846 Query: 683 atgcatggacttttgcct 700 | |||||||||||||||| Sbjct: 845 aagcatggacttttgcct 828
>gb|BT019000.1| Zea mays clone Contig488.F mRNA sequence Length = 1411 Score = 458 bits (231), Expect = e-125 Identities = 375/423 (88%) Strand = Plus / Minus Query: 275 atcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaagatccattctgc 334 |||| |||||||||||||||||||||||||| || || || ||||||||||||||||||| Sbjct: 1212 atcagaacatcttaccagtgccatctttgcgtggaacagaatcttcaagatccattctgc 1153 Query: 335 gccagctcccagccaaagatgacatctgatcaaccttgtcatacaacccaagaagaccgc 394 |||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||| | Sbjct: 1152 gccagctcccagccaaagatgacaactggtcagccttatcatacaacccaagaagaccac 1093 Query: 395 ctgtgtggacaaagaggactttccgcccattccacttggaaggattagcagccatgtctt 454 ||||||||| ||| || ||||| || || ||||| |||| ||||| |||||||||||| Sbjct: 1092 ctgtgtggataaacagaacttttcgacctttccatttggctggattgccagccatgtctt 1033 Query: 455 tcagcattgcatatgctcccttcccactgtagactggatcaagcacaatgcctgttgctg 514 | |||| |||| | ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 1032 ttagcaaaccataaaccgccttcccactgtagactggatcaaggacaatgcctgttgatg 973 Query: 515 cagctatatctttaacaaacttaagctcctcagctgtgttcatggcataacctaagccct 574 ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 972 cagctatgtctttgacaaacttaagctcctcagctgtgttcatggcatagcctaacccct 913 Query: 575 tagcattttgaatgctgactatatcatgtgagtccaagccagattgtagtccatcaatca 634 ||||||||| ||||| |||||||||||||| || || ||||| | ||||||||||||| Sbjct: 912 tagcattttccatgctaactatatcatgtgaatcgaaaccagaattaagtccatcaatca 853 Query: 635 ggccttgaacataatcatagaagtattcagggtcatcgcaaacagagaatgcatggactt 694 ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 852 ggccttggacatagtcatagaagtattcagggtcatcacaaacagagaatgcatgaactt 793 Query: 695 ttg 697 ||| Sbjct: 792 ttg 790
>gb|AY106365.1| Zea mays PCO076269 mRNA sequence Length = 1286 Score = 458 bits (231), Expect = e-125 Identities = 375/423 (88%) Strand = Plus / Minus Query: 275 atcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaagatccattctgc 334 |||| |||||||||||||||||||||||||| || || || ||||||||||||||||||| Sbjct: 1244 atcagaacatcttaccagtgccatctttgcgtggaacagaatcttcaagatccattctgc 1185 Query: 335 gccagctcccagccaaagatgacatctgatcaaccttgtcatacaacccaagaagaccgc 394 |||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||| | Sbjct: 1184 gccagctcccagccaaagatgacaactggtcagccttatcatacaacccaagaagaccac 1125 Query: 395 ctgtgtggacaaagaggactttccgcccattccacttggaaggattagcagccatgtctt 454 ||||||||| ||| || ||||| || || ||||| |||| ||||| |||||||||||| Sbjct: 1124 ctgtgtggataaacagaacttttcgacctttccatttggctggattgccagccatgtctt 1065 Query: 455 tcagcattgcatatgctcccttcccactgtagactggatcaagcacaatgcctgttgctg 514 | |||| |||| | ||||||||||||||||||||||||| | ||||||||||| || Sbjct: 1064 ttagcaaaccataaaccgccttcccactgtagactggatcaaggataatgcctgttgatg 1005 Query: 515 cagctatatctttaacaaacttaagctcctcagctgtgttcatggcataacctaagccct 574 ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 1004 cagctatgtctttgacaaacttaagctcctcagctgtgttcatggcatagcctaacccct 945 Query: 575 tagcattttgaatgctgactatatcatgtgagtccaagccagattgtagtccatcaatca 634 ||||||||| ||||| |||||||||||||| ||||| ||||| | ||||||||||||| Sbjct: 944 tagcattttcgatgctaactatatcatgtgaatccaaaccagaattaagtccatcaatca 885 Query: 635 ggccttgaacataatcatagaagtattcagggtcatcgcaaacagagaatgcatggactt 694 ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 884 ggccttggacatagtcatagaagtattcagggtcatcacaaacagagaatgcatgaactt 825 Query: 695 ttg 697 ||| Sbjct: 824 ttg 822
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 208 bits (105), Expect = 2e-50 Identities = 192/221 (86%) Strand = Plus / Plus Query: 263 tggagcatagcaatcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaa 322 |||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||| Sbjct: 32663646 tggagcatagcaatcagaacatcttaccagttccatctttgcgtggaacagattcttcaa 32663705 Query: 323 gatccattctgcgccagctcccagccaaagatgacatctgatcaaccttgtcatacaacc 382 |||||||||||||||| |||||| ||||||||| | || ||||||||| |||||||| | Sbjct: 32663706 gatccattctgcgccaactcccactcaaagatgataactcatcaaccttatcatacaaac 32663765 Query: 383 caagaagaccgcctgtgtggacaaagaggactttccgcccattccacttggaaggattag 442 |||||||||| ||||| || ||||| || | ||| ||||| | |||||| | ||||||| Sbjct: 32663766 caagaagaccacctgtatgtacaaaaagaatttttcgcccttcccacttagctggattag 32663825 Query: 443 cagccatgtctttcagcattgcatatgctcccttcccactg 483 || ||||||||||||||||| |||||||| |||| |||||| Sbjct: 32663826 cacccatgtctttcagcattccatatgctgcctttccactg 32663866 Score = 178 bits (90), Expect = 2e-41 Identities = 96/98 (97%) Strand = Plus / Plus Query: 481 ctgtagactggatcaagcacaatgcctgttgctgcagctatatctttaacaaacttaagc 540 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 32664065 ctgtagactggatcaaggacaatgcctgttgctgtagctatatctttaacaaacttaagc 32664124 Query: 541 tcctcagctgtgttcatggcataacctaagcccttagc 578 |||||||||||||||||||||||||||||||||||||| Sbjct: 32664125 tcctcagctgtgttcatggcataacctaagcccttagc 32664162 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 578 cattttgaatgctgactatatcatgtgagtccaagccagattgtagtccatcaatcaggc 637 |||||| |||| |||||| ||||||||| ||| |||| || ||||||||||||||| Sbjct: 32664405 cattttcaatgttgactaaatcatgtgaacgcaaatcagaatgaagtccatcaatcaggt 32664464 Query: 638 cttgaacataatcatagaagtattcagggtcatcgcaaacagagaatgcatggac 692 |||||||||| || ||| ||| |||| ||||| ||||||||||| |||||||| Sbjct: 32664465 cttgaacataggaatggaaatatccaggatcatcacaaacagagaaagcatggac 32664519
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 208 bits (105), Expect = 2e-50 Identities = 192/221 (86%) Strand = Plus / Plus Query: 263 tggagcatagcaatcaaaacatcttaccagtgccatctttgcgcgggactgattcttcaa 322 |||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||| Sbjct: 91017 tggagcatagcaatcagaacatcttaccagttccatctttgcgtggaacagattcttcaa 91076 Query: 323 gatccattctgcgccagctcccagccaaagatgacatctgatcaaccttgtcatacaacc 382 |||||||||||||||| |||||| ||||||||| | || ||||||||| |||||||| | Sbjct: 91077 gatccattctgcgccaactcccactcaaagatgataactcatcaaccttatcatacaaac 91136 Query: 383 caagaagaccgcctgtgtggacaaagaggactttccgcccattccacttggaaggattag 442 |||||||||| ||||| || ||||| || | ||| ||||| | |||||| | ||||||| Sbjct: 91137 caagaagaccacctgtatgtacaaaaagaatttttcgcccttcccacttagctggattag 91196 Query: 443 cagccatgtctttcagcattgcatatgctcccttcccactg 483 || ||||||||||||||||| |||||||| |||| |||||| Sbjct: 91197 cacccatgtctttcagcattccatatgctgcctttccactg 91237 Score = 178 bits (90), Expect = 2e-41 Identities = 96/98 (97%) Strand = Plus / Plus Query: 481 ctgtagactggatcaagcacaatgcctgttgctgcagctatatctttaacaaacttaagc 540 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 91436 ctgtagactggatcaaggacaatgcctgttgctgtagctatatctttaacaaacttaagc 91495 Query: 541 tcctcagctgtgttcatggcataacctaagcccttagc 578 |||||||||||||||||||||||||||||||||||||| Sbjct: 91496 tcctcagctgtgttcatggcataacctaagcccttagc 91533 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 578 cattttgaatgctgactatatcatgtgagtccaagccagattgtagtccatcaatcaggc 637 |||||| |||| |||||| ||||||||| ||| |||| || ||||||||||||||| Sbjct: 91776 cattttcaatgttgactaaatcatgtgaacgcaaatcagaatgaagtccatcaatcaggt 91835 Query: 638 cttgaacataatcatagaagtattcagggtcatcgcaaacagagaatgcatggac 692 |||||||||| || ||| ||| |||| ||||| ||||||||||| |||||||| Sbjct: 91836 cttgaacataggaatggaaatatccaggatcatcacaaacagagaaagcatggac 91890
>ref|NM_103738.4| Arabidopsis thaliana catalytic AT1G48420 mRNA, complete cds Length = 1375 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1132 agatgccatttgatcaaccttatcatacaacccaagaag 1094 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 834 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 794
>gb|AY093325.1| Arabidopsis thaliana unknown protein (At1g48420) mRNA, complete cds Length = 1224 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1074 agatgccatttgatcaaccttatcatacaacccaagaag 1036 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 776 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 736
>gb|AY062659.1| Arabidopsis thaliana Unknown protein (At1g48420; F11A17.2) mRNA, complete cds Length = 1295 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1129 agatgccatttgatcaaccttatcatacaacccaagaag 1091 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 831 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 791
>emb|BX814218.1|CNS0ADFS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZD10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1294 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1108 agatgccatttgatcaaccttatcatacaacccaagaag 1070 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 810 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 770
>emb|BX817146.1|CNS0AD8B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1312 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1122 agatgccatttgatcaaccttatcatacaacccaagaag 1084 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 824 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 784
>emb|BX815176.1|CNS0ACUT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1281 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 1066 agatgccatttgatcaaccttatcatacaacccaagaag 1028 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 768 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 728
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete sequence Length = 102078 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 7222 agatgccatttgatcaaccttatcatacaacccaagaag 7184 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 6654 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 6614
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I, complete sequence Length = 95295 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 351 agatgacatctgatcaaccttgtcatacaacccaagaag 389 ||||| ||| ||||||||||| ||||||||||||||||| Sbjct: 11734 agatgccatttgatcaaccttatcatacaacccaagaag 11772 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 649 tcatagaagtattcagggtcatcgcaaacagagaatgcatg 689 ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 12302 tcatagaagtaatcaggatcatcgcaaaccgagaaagcatg 12342
>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205032 Score = 44.1 bits (22), Expect = 0.61 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 54 atagaaca-aaaaagaaacagaaggcattt 82 |||||||| ||||||||||||||||||||| Sbjct: 137545 atagaacacaaaaagaaacagaaggcattt 137574
>gb|AC123692.25| Mus musculus chromosome 15, clone RP23-326B14, complete sequence Length = 202833 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 102 ctttattttcaaatggcagaaa 123 |||||||||||||||||||||| Sbjct: 35723 ctttattttcaaatggcagaaa 35702
>gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome 17, complete sequence Length = 204253 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 367 accttgtcatacaacccaagaagacc 392 ||||| |||||||||||||||||||| Sbjct: 184603 accttttcatacaacccaagaagacc 184628
>gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome 17, complete sequence Length = 190880 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 367 accttgtcatacaacccaagaagacc 392 ||||| |||||||||||||||||||| Sbjct: 77983 accttttcatacaacccaagaagacc 77958
>gb|AC159338.10| Mus musculus 6 BAC RP24-540A24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173081 Score = 44.1 bits (22), Expect = 0.61 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 54 atagaaca-aaaaagaaacagaaggcattt 82 |||||||| ||||||||||||||||||||| Sbjct: 42196 atagaacacaaaaagaaacagaaggcattt 42167
>ref|XM_728693.1| Plasmodium chabaudi chabaudi hypothetical protein (PC107534.00.0) partial mRNA Length = 631 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 acatagaacaaaaaagaaaca 72 ||||||||||||||||||||| Sbjct: 290 acatagaacaaaaaagaaaca 310
>ref|XM_728787.1| Plasmodium chabaudi chabaudi hypothetical protein (PC402306.00.0) partial mRNA Length = 633 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 acatagaacaaaaaagaaaca 72 ||||||||||||||||||||| Sbjct: 292 acatagaacaaaaaagaaaca 312
>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG island, complete sequence Length = 174615 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 aaaaagaaacagaaggcatttaaat 86 ||||||||||||||||||| ||||| Sbjct: 18098 aaaaagaaacagaaggcatctaaat 18074
>emb|AL356053.14| Human DNA sequence from clone RP11-453G10 on chromosome 10 Contains part of a novel gene (FLJ13031) (FLJ40349), complete sequence Length = 176355 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 aaaaagaaacagaaggcatttaaat 86 |||||||||||||||||||| |||| Sbjct: 25874 aaaaagaaacagaaggcattcaaat 25850
>emb|AL160399.13| Human DNA sequence from clone RP11-161N21 on chromosome 6, complete sequence Length = 126595 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 61 aaaaaagaaacagaaggcatttaaataagaaat 93 ||||| |||| ||||||||||||||| |||||| Sbjct: 79510 aaaaatgaaatagaaggcatttaaatcagaaat 79542
>emb|AL136325.6| Human DNA sequence from clone RP5-983F16 on chromosome 1p21.3-22.2 Contains a eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene and a CpG island, complete sequence Length = 133052 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 ataagaaatacagatagcttt 105 ||||||||||||||||||||| Sbjct: 19680 ataagaaatacagatagcttt 19700
>gb|AC164662.6| Mus musculus 10 BAC RP24-279D11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154482 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 tacatagaacaaaaaagaaacagaa 75 |||| |||||||||||||||||||| Sbjct: 14411 tacagagaacaaaaaagaaacagaa 14387
>gb|AC010600.6| Homo sapiens chromosome 5 clone CTC-564D18, complete sequence Length = 173349 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 tgcacttcactcttgtatatc 146 ||||||||||||||||||||| Sbjct: 109760 tgcacttcactcttgtatatc 109780
>gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, complete sequence Length = 90526 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 ataagaaatacagatagcttt 105 ||||||||||||||||||||| Sbjct: 60026 ataagaaatacagatagcttt 60046
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 atagaacaaaaaagaaacaga 74 ||||||||||||||||||||| Sbjct: 34726457 atagaacaaaaaagaaacaga 34726477 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 tctattctgaattttctttcacaaa 195 ||||||||||| ||||||||||||| Sbjct: 31828582 tctattctgaaatttctttcacaaa 31828606
>gb|AC092680.2| Homo sapiens BAC clone RP11-694B12 from 2, complete sequence Length = 200028 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 atagaacaaaaaagaaacaga 74 ||||||||||||||||||||| Sbjct: 53684 atagaacaaaaaagaaacaga 53704
>gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complete sequence Length = 126219 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ttacatagaacaaaaaagaaa 70 ||||||||||||||||||||| Sbjct: 12733 ttacatagaacaaaaaagaaa 12713
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 atagaacaaaaaagaaacaga 74 ||||||||||||||||||||| Sbjct: 41697 atagaacaaaaaagaaacaga 41717
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 tctattctgaattttctttcacaaa 195 ||||||||||| ||||||||||||| Sbjct: 14660 tctattctgaaatttctttcacaaa 14684
>gb|AC008430.3|AC008430 Homo sapiens chromosome 5 clone CTC-310F2, complete sequence Length = 199912 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 tgcacttcactcttgtatatc 146 ||||||||||||||||||||| Sbjct: 159071 tgcacttcactcttgtatatc 159091
>dbj|AK101271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032P22, full insert sequence Length = 2328 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 tctattctgaattttctttcacaaa 195 ||||||||||| ||||||||||||| Sbjct: 1652 tctattctgaaatttctttcacaaa 1676
>dbj|AK099226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M20, full insert sequence Length = 2037 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 tctattctgaattttctttcacaaa 195 ||||||||||| ||||||||||||| Sbjct: 1472 tctattctgaaatttctttcacaaa 1496
>dbj|AK067990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122J07, full insert sequence Length = 2230 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 tctattctgaattttctttcacaaa 195 ||||||||||| ||||||||||||| Sbjct: 1649 tctattctgaaatttctttcacaaa 1673
>emb|AL355540.12| Human DNA sequence from clone RP5-1104A8 on chromosome 1. Contains part of a novel gene, ESTs, STSs and GSSs, complete sequence Length = 120219 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 aaaaagaaacagaaggcatttaaat 86 |||||||||||||||||||| |||| Sbjct: 44851 aaaaagaaacagaaggcattcaaat 44875
>gb|AC153496.4| Mus musculus 10 BAC RP23-373D1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 149839 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 tacatagaacaaaaaagaaacagaa 75 |||| |||||||||||||||||||| Sbjct: 116722 tacagagaacaaaaaagaaacagaa 116746
>gb|AC145963.5| Gallus gallus BAC clone CH261-20A24 from chromosome unknown, complete sequence Length = 185318 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 aaaagaaacagaaggcattta 83 ||||||||||||||||||||| Sbjct: 74827 aaaagaaacagaaggcattta 74847
>gb|AC101952.15| Mus musculus chromosome 5, clone RP24-155B4, complete sequence Length = 163118 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 ggccttgaacataatcatag 654 |||||||||||||||||||| Sbjct: 91188 ggccttgaacataatcatag 91169
>ref|NM_180718.1| Arabidopsis thaliana AAO1 (ALDEHYDE OXIDASE 1) AT5G20960 (AAO1) transcript variant AT5G20960.1 mRNA, complete cds Length = 4484 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatgcctgttgctgcagct 519 |||||||||||||||||||| Sbjct: 2561 caatgcctgttgctgcagct 2580
>ref|NM_122105.2| Arabidopsis thaliana AAO1 (ALDEHYDE OXIDASE 1) AT5G20960 (AAO1) transcript variant AT5G20960.2 mRNA, complete cds Length = 4426 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatgcctgttgctgcagct 519 |||||||||||||||||||| Sbjct: 2561 caatgcctgttgctgcagct 2580
>gb|AC011761.15| Drosophila melanogaster clone BACH50G05, complete sequence Length = 108727 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tatactcttaagaataatga 225 |||||||||||||||||||| Sbjct: 54281 tatactcttaagaataatga 54300
>ref|XM_364253.1| Magnaporthe grisea 70-15 hypothetical protein (MG09098.4) partial mRNA Length = 3153 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cagtgccatctttgcgcggg 309 |||||||||||||||||||| Sbjct: 87 cagtgccatctttgcgcggg 106
>gb|AC146138.2| Pan troglodytes BAC clone RP43-3D14 from 7, complete sequence Length = 176823 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 174400 agaacaaaaaagaaacagaa 174381
>gb|BT013578.1| Lycopersicon esculentum clone 132323R, mRNA sequence Length = 1492 Score = 40.1 bits (20), Expect = 9.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 446 ccatgtctttcagcattgcatatgctcccttcccactgtagactggatcaag 497 |||||||||||| |||| |||| ||| | || ||||||||||| || ||||| Sbjct: 1103 ccatgtctttcatcattccataagctgctttaccactgtagacagggtcaag 1052
>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence Length = 237814 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aaataagaaatacagatagc 102 |||||||||||||||||||| Sbjct: 92613 aaataagaaatacagatagc 92594
>gb|AC140437.3| Mus musculus BAC clone RP23-88N2 from chromosome 8, complete sequence Length = 171402 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tacatagaacaaaaaagaaa 70 |||||||||||||||||||| Sbjct: 165457 tacatagaacaaaaaagaaa 165438
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence Length = 209706 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caaaaaagaaacagaaggca 79 |||||||||||||||||||| Sbjct: 189498 caaaaaagaaacagaaggca 189517
>emb|AL731813.23| Human DNA sequence from clone RP11-354N9 on chromosome 9, complete sequence Length = 69434 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 catttaaataagaaatacag 97 |||||||||||||||||||| Sbjct: 22698 catttaaataagaaatacag 22717
>gb|AC136833.3| Rattus norvegicus 1 BAC CH230-184E24 (Children's Hospital Oakland Research Institute) complete sequence Length = 186074 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acaaaaaagaaacagaaggc 78 |||||||||||||||||||| Sbjct: 66396 acaaaaaagaaacagaaggc 66415
>emb|AL590375.5| Human DNA sequence from clone RP11-546A8 on chromosome X, complete sequence Length = 63324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aaaaaagaaacagaaggcat 80 |||||||||||||||||||| Sbjct: 37524 aaaaaagaaacagaaggcat 37505
>emb|AL353779.11| Human DNA sequence from clone RP1-43O17 on chromosome 1 Contains the LEP7 gene for late envelope protein 7, two small proline rich-like (epidermal differentiation complex) 1B (SPRL1B) pseudogenes, the gene for a novel protein, the LEP6 gene for late envelope protein 6, the LEP5 gene for late envelope protein 5, the LEP4 gene for late envelope protein 4 and the LEP3 gene for late envelope protein 3, complete sequence Length = 96013 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 58 aacaaaaaagaaacagaaggcatttaaa 85 ||||||||||||||| ||||||| |||| Sbjct: 74275 aacaaaaaagaaacacaaggcatgtaaa 74302
>emb|AL136964.8| Human DNA sequence from clone RP11-346C4 on chromosome 13 Contains the 5' end of a novel gene, a novel gene and 2 CpG islands,, complete sequence Length = 171991 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ctgtatattatataactaaa 41 |||||||||||||||||||| Sbjct: 77515 ctgtatattatataactaaa 77496
>gb|AC158941.4| Mus musculus chromosome 5, clone RP23-227I15, complete sequence Length = 180169 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 ggccttgaacataatcatag 654 |||||||||||||||||||| Sbjct: 26744 ggccttgaacataatcatag 26763
>emb|X13303.1|KPNIF Klebsiella pneumoniae DNA for nif gene cluster Length = 24206 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 18419 tattcagggtcatcgcaaac 18400
>gb|AC004522.3| Homo sapiens PAC clone RP4-604G5 from 7, complete sequence Length = 100097 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 1351 agaacaaaaaagaaacagaa 1370
>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5 Length = 262202 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaatacagatagctttattt 109 |||||||||||||||||||| Sbjct: 18635 aaatacagatagctttattt 18616
>gb|AY128924.1| Arabidopsis thaliana unknown protein (At4g02940) mRNA, complete cds Length = 1870 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 1809 agaacaaaaaagaaacagaa 1790
>gb|AC079943.18| Homo sapiens 3 BAC RP11-290K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 139556 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 61 aaaaaagaaacagaaggcatttaaataagaaa 92 |||||||||||| |||||||| ||| |||||| Sbjct: 107220 aaaaaagaaacaaaaggcattcaaagaagaaa 107251
>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome Length = 1166239 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaacaaaaaagaaacagaag 76 |||||||||||||||||||| Sbjct: 425595 gaacaaaaaagaaacagaag 425576
>gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129740 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ctgtatattatataactaaa 41 |||||||||||||||||||| Sbjct: 25987 ctgtatattatataactaaa 26006
>gb|AY093043.1| Arabidopsis thaliana unknown protein (At4g02940) mRNA, complete cds Length = 2089 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 1964 agaacaaaaaagaaacagaa 1945
>gb|AC109592.3| Homo sapiens BAC clone RP11-750O22 from 4, complete sequence Length = 86314 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 acataatcatagaagtattc 662 |||||||||||||||||||| Sbjct: 74191 acataatcatagaagtattc 74210
>gb|AC093619.5| Homo sapiens BAC clone RP13-741A20 from 7, complete sequence Length = 42967 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 42318 agaacaaaaaagaaacagaa 42337
>gb|AC026337.29| Homo sapiens 2 BAC RP11-105E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171004 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 caaagatgacatctgatcaa 367 |||||||||||||||||||| Sbjct: 154232 caaagatgacatctgatcaa 154251
>gb|AC146015.4| Pan troglodytes BAC clone RP43-129D8 from chromosome 7, complete sequence Length = 151463 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 agaacaaaaaagaaacagaa 75 |||||||||||||||||||| Sbjct: 48392 agaacaaaaaagaaacagaa 48373
>gb|S59063.1| nifL=nitrogen fixation positive activator protein [Klebsiella pneumoniae, Genomic, 1560 nt] Length = 1560 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 73 tattcagggtcatcgcaaac 54
>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10, complete sequence Length = 228624 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttcaaatggcagaaagatgc 128 |||||||||||||||||||| Sbjct: 117010 ttcaaatggcagaaagatgc 117029
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aacagaaggcatttaaataa 88 |||||||||||||||||||| Sbjct: 28290505 aacagaaggcatttaaataa 28290524
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 agagattacatagaacaaaa 64 |||||||||||||||||||| Sbjct: 4202049 agagattacatagaacaaaa 4202068 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aacagaaggcatttaaataa 88 |||||||||||||||||||| Sbjct: 3604916 aacagaaggcatttaaataa 3604897
>gb|AC069333.8| Homo sapiens BAC clone RP11-634D21 from 2, complete sequence Length = 87829 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 caaagatgacatctgatcaa 367 |||||||||||||||||||| Sbjct: 24475 caaagatgacatctgatcaa 24494
>dbj|AB162343.1| Oncorhynchus mykiss genes, MHC class I b region, complete cds Length = 110760 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 atagcaatcaaaacatctta 288 |||||||||||||||||||| Sbjct: 5548 atagcaatcaaaacatctta 5529
>gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70G19, complete sequence Length = 194813 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tttaaataagaaatacagat 99 |||||||||||||||||||| Sbjct: 153105 tttaaataagaaatacagat 153124
>gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143417 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ctgtatattatataactaaa 41 |||||||||||||||||||| Sbjct: 39679 ctgtatattatataactaaa 39698
>gb|AC175664.2| Mus musculus BAC clone RP24-391A3 from chromosome 8, complete sequence Length = 168189 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tacatagaacaaaaaagaaa 70 |||||||||||||||||||| Sbjct: 138622 tacatagaacaaaaaagaaa 138641
>gb|AF450503.1| Bothrops erythromelas berythractivase (ery1) mRNA, complete cds Length = 2326 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 cacaatgcctgttgctgcag 517 |||||||||||||||||||| Sbjct: 1882 cacaatgcctgttgctgcag 1863
>dbj|AB191036.1| Xenopus laevis gene for tudor repeat protein Xtr, partial cds Length = 17591 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 caagactgtatattatataa 36 |||||||||||||||||||| Sbjct: 16892 caagactgtatattatataa 16911
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aacagaaggcatttaaataa 88 |||||||||||||||||||| Sbjct: 74233 aacagaaggcatttaaataa 74214
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 agagattacatagaacaaaa 64 |||||||||||||||||||| Sbjct: 85671 agagattacatagaacaaaa 85690
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aacagaaggcatttaaataa 88 |||||||||||||||||||| Sbjct: 142866 aacagaaggcatttaaataa 142847
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 agagattacatagaacaaaa 64 |||||||||||||||||||| Sbjct: 23103 agagattacatagaacaaaa 23122
>emb|AL844869.5| Mouse DNA sequence from clone RP23-437K18 on chromosome X, complete sequence Length = 207432 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gaaggcatttaaataagaaataca 96 |||||||||||||||| ||||||| Sbjct: 44002 gaaggcatttaaataataaataca 44025
>emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chromosome X, complete sequence Length = 159365 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ttaagaataatgacatttct 232 |||||||||||||||||||| Sbjct: 132848 ttaagaataatgacatttct 132829
>dbj|AB005804.1| Arabidopsis thaliana AAO1 mRNA for aldehyde oxidase, complete cds Length = 4484 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatgcctgttgctgcagct 519 |||||||||||||||||||| Sbjct: 2561 caatgcctgttgctgcagct 2580
>emb|Y00525.1|KPNIFL1 Klebsiella pneumoniae nifL gene for regulatory protein Length = 1530 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 53 tattcagggtcatcgcaaac 34
>gb|J01743.1|KPNNIFLAP Klebsiella pneumoniae NifF and NifL genes, partial cds Length = 564 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 439 tattcagggtcatcgcaaac 420
>emb|CR352256.11| Zebrafish DNA sequence from clone CH211-218G23 in linkage group 11, complete sequence Length = 111902 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agactgtatattatataactaaac 42 ||||||||||||||||| |||||| Sbjct: 19366 agactgtatattatatacctaaac 19389
>gb|AE003570.4| Drosophila melanogaster chromosome X, section 69 of 74 of the complete sequence Length = 300051 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tatactcttaagaataatga 225 |||||||||||||||||||| Sbjct: 50697 tatactcttaagaataatga 50678
>dbj|AP006293.2| Homo sapiens genomic DNA, chromosome 9 clone:RP11-818I20, complete sequence Length = 155000 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 catttaaataagaaatacag 97 |||||||||||||||||||| Sbjct: 64440 catttaaataagaaatacag 64459
>dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691L4, complete sequence Length = 181140 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gcacaatgcctgttgctgca 516 |||||||||||||||||||| Sbjct: 56776 gcacaatgcctgttgctgca 56757
>dbj|AP006220.1| Homo sapiens genomic DNA, chromosome 18, clone:RP11-791E5, complete sequence Length = 118000 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tttaaataagaaatacagat 99 |||||||||||||||||||| Sbjct: 111883 tttaaataagaaatacagat 111902
>emb|AL845438.21| Zebrafish DNA sequence from clone CH211-120G21 in linkage group 10, complete sequence Length = 175059 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttcaaatggcagaaagatgc 128 |||||||||||||||||||| Sbjct: 93436 ttcaaatggcagaaagatgc 93455
>gb|AF039895.1|AF039895 Arabidopsis thaliana putative aldehyde oxidase (AO1) mRNA, complete cds Length = 4205 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatgcctgttgctgcagct 519 |||||||||||||||||||| Sbjct: 2507 caatgcctgttgctgcagct 2526
>gb|AF085949.1|HUMYR76A02 Homo sapiens full length insert cDNA clone YR76A02 Length = 470 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 gcacaatgcctgttgctgca 516 |||||||||||||||||||| Sbjct: 374 gcacaatgcctgttgctgca 393
>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence Length = 150957 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aacagaaggcatttaaataa 88 |||||||||||||||||||| Sbjct: 82813 aacagaaggcatttaaataa 82832
>emb|CR847941.14| Zebrafish DNA sequence from clone CH211-275J6 in linkage group 5, complete sequence Length = 151835 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acaaaaaagaaacagaaggc 78 |||||||||||||||||||| Sbjct: 20125 acaaaaaagaaacagaaggc 20144
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gaagcggtttctggagcata 271 |||||||||||||||||||| Sbjct: 4525 gaagcggtttctggagcata 4506
>emb|CT030211.4| M.truncatula DNA sequence from clone MTH2-85A3 on chromosome 3, complete sequence Length = 78707 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 catatactcttaagaataat 223 |||||||||||||||||||| Sbjct: 70830 catatactcttaagaataat 70811
>dbj|AP006660.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16J06, TM0346, complete sequence Length = 107098 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gcatttaaataagaaataca 96 |||||||||||||||||||| Sbjct: 73903 gcatttaaataagaaataca 73922
>gb|M17922.1|MUSUPAA Mouse Murine urokinase-type plasminogen activator protein gene, complete cds Length = 9950 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 cttagcattttgaatgctga 592 |||||||||||||||||||| Sbjct: 6870 cttagcattttgaatgctga 6889
>gb|K01474.1|KPNNIFL K.pneumoniae nifL (nitrogen fixation gene) promoter region Length = 479 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 282 tattcagggtcatcgcaaac 263
>dbj|AB020874.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 6/10 Length = 100000 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 catttaaataagaaatacag 97 |||||||||||||||||||| Sbjct: 69474 catttaaataagaaatacag 69493
>dbj|D00339.1|KPNNIFLA Klebsiella oxytoca genes for NifF protein, NifL protein, NifA protein, NifB protein, complete and partial cds Length = 4140 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 658 tattcagggtcatcgcaaac 677 |||||||||||||||||||| Sbjct: 520 tattcagggtcatcgcaaac 501 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,149,872 Number of Sequences: 3902068 Number of extensions: 8149872 Number of successful extensions: 179308 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 178810 Number of HSP's gapped (non-prelim): 496 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)