ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29h20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549893.1| Oryza sativa (japonica cultivar-group), mRNA 133 4e-28
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
3dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
4dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
5gb|AY108371.1| Zea mays PCO102047 mRNA sequence 115 1e-22
6ref|XM_549890.1| Oryza sativa (japonica cultivar-group), mRNA 103 4e-19
7ref|XM_471701.1| Oryza sativa (japonica cultivar-group), predic... 66 8e-08
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
9emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 66 8e-08
10ref|NM_188329.1| Oryza sativa (japonica cultivar-group), Ozsa808... 60 5e-06
11dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
12ref|NM_188330.1| Oryza sativa (japonica cultivar-group), Ozsa808... 46 0.075
13ref|XM_471708.1| Oryza sativa (japonica cultivar-group), predic... 46 0.075
14ref|XM_471711.1| Oryza sativa (japonica cultivar-group), predic... 46 0.075
15emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 46 0.075
16ref|NM_015172.2| Homo sapiens BAT2 domain containing 1 (BAT2D1),... 44 0.30
17ref|XM_471702.1| Oryza sativa (japonica cultivar-group), predic... 44 0.30
18emb|AL021579.1|HS598F2 Human DNA sequence from clone RP4-598F2 o... 44 0.30
19emb|AL162004.1|HSM802522 Homo sapiens mRNA; cDNA DKFZp434M1616 (... 44 0.30
20dbj|AB029019.2| Homo sapiens mRNA for KIAA1096 protein, partial cds 44 0.30
21dbj|AK124374.1| Homo sapiens cDNA FLJ42383 fis, clone UTERU2036623 44 0.30
22gb|AF488829.1| Homo sapiens HBxAg transactivated protein 2 (XTP2... 44 0.30
23dbj|AK072639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
24emb|AL096857.1|HS598F21A Novel human mRNA from chromosome 1, whi... 44 0.30
25gb|AC129178.4| Mus musculus BAC clone RP23-217G18 from chromosom... 42 1.2
26gb|AC123654.9| Mus musculus chromosome 15, clone RP23-161D16, co... 40 4.7
27gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, com... 40 4.7
28gb|AC103693.2| Homo sapiens chromosome 18, clone CTD-2522C24, co... 40 4.7
29gb|AC097498.3| Homo sapiens BAC clone RP11-326N15 from 4, comple... 40 4.7
30emb|BX470176.11| Zebrafish DNA sequence from clone CH211-120C23 ... 40 4.7
31gb|AC008245.6| Homo sapiens chromosome 18, clone RP11-146N18, co... 40 4.7
32gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, com... 40 4.7
33gb|AC027290.31| Homo sapiens 12 BAC RP11-463O12 (Roswell Park Ca... 40 4.7
34emb|AL928682.11| Mouse DNA sequence from clone RP23-143K9 on chr... 40 4.7
35emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chr... 40 4.7
36emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chr... 40 4.7
37emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chro... 40 4.7 
>ref|XM_549893.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1806

 Score =  133 bits (67), Expect = 4e-28
 Identities = 130/151 (86%)
 Strand = Plus / Minus

                                                                        
Query: 189  tggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaattt 248
            |||| |||||||| ||||| || || || ||||||| ||||||||||||||||||||| |
Sbjct: 1687 tggtgccttccaaaactttgacaacctcagacatttgaggccttcttttgcaatcaatct 1628

                                                                        
Query: 249  gcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatgt 308
            ||||||||||||||||||| ||||| ||||||||||  || |||  |||| || |||| |
Sbjct: 1627 gcaaacaccacattgcgagtttcatcatctcaattatttcttgccggtgtacttgcatat 1568

                                           
Query: 309  cattactgttcttgtcaatcaaatctaccaa 339
            |||| |||| |||||||||||||||| ||||
Sbjct: 1567 cattgctgtgcttgtcaatcaaatctgccaa 1537
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 4e-28
 Identities = 130/151 (86%)
 Strand = Plus / Minus

                                                                          
Query: 189    tggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaattt 248
              |||| |||||||| ||||| || || || ||||||| ||||||||||||||||||||| |
Sbjct: 739779 tggtgccttccaaaactttgacaacctcagacatttgaggccttcttttgcaatcaatct 739720

                                                                          
Query: 249    gcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatgt 308
              ||||||||||||||||||| ||||| ||||||||||  || |||  |||| || |||| |
Sbjct: 739719 gcaaacaccacattgcgagtttcatcatctcaattatttcttgccggtgtacttgcatat 739660

                                             
Query: 309    cattactgttcttgtcaatcaaatctaccaa 339
              |||| |||| |||||||||||||||| ||||
Sbjct: 739659 cattgctgtgcttgtcaatcaaatctgccaa 739629



 Score =  103 bits (52), Expect = 4e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                          
Query: 188    atggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaatt 247
              ||||| ||||||||  |||| || || || ||||||| |||||| ||||||||||| || 
Sbjct: 729808 atggtgccttccaatgcttttacaacctcagacatttgaggcctccttttgcaatcgatc 729749

                                                                          
Query: 248    tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
              ||||||||||||||||| |  ||||| ||||| ||||| || |||| |||| || |||||
Sbjct: 729748 tgcaaacaccacattgcaaatttcatcatctctattacttcttgctcgtgtacttgcatg 729689

                                              
Query: 308    tcattactgttcttgtcaatcaaatctaccaa 339
              |||||| | |  ||||||||||||||||||||
Sbjct: 729688 tcattattatctttgtcaatcaaatctaccaa 729657



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                           
Query: 226     aggccttcttttgcaatcaatttgcaaacaccacattgcgagcttcatgatctcaattac 285
               ||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||  || ||
Sbjct: 5728660 aggccttctgttgcaatcactctgcaagcaccacattgcaagcttcattatctttatcac 5728601

                     
Query: 286     atcctg 291
               ||||||
Sbjct: 5728600 atcctg 5728595



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                  
Query: 248     tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgt 298
               |||||||||||||| || |||||||| | |||||| || |||| |||||||
Sbjct: 5733139 tgcaaacaccacatggcaagcttcatcacctcaatcacttcctccttgtgt 5733089
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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score =  133 bits (67), Expect = 4e-28
 Identities = 130/151 (86%)
 Strand = Plus / Minus

                                                                         
Query: 189   tggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaattt 248
             |||| |||||||| ||||| || || || ||||||| ||||||||||||||||||||| |
Sbjct: 16979 tggtgccttccaaaactttgacaacctcagacatttgaggccttcttttgcaatcaatct 16920

                                                                         
Query: 249   gcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatgt 308
             ||||||||||||||||||| ||||| ||||||||||  || |||  |||| || |||| |
Sbjct: 16919 gcaaacaccacattgcgagtttcatcatctcaattatttcttgccggtgtacttgcatat 16860

                                            
Query: 309   cattactgttcttgtcaatcaaatctaccaa 339
             |||| |||| |||||||||||||||| ||||
Sbjct: 16859 cattgctgtgcttgtcaatcaaatctgccaa 16829



 Score =  103 bits (52), Expect = 4e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                        
Query: 188  atggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaatt 247
            ||||| ||||||||  |||| || || || ||||||| |||||| ||||||||||| || 
Sbjct: 7008 atggtgccttccaatgcttttacaacctcagacatttgaggcctccttttgcaatcgatc 6949

                                                                        
Query: 248  tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
            ||||||||||||||||| |  ||||| ||||| ||||| || |||| |||| || |||||
Sbjct: 6948 tgcaaacaccacattgcaaatttcatcatctctattacttcttgctcgtgtacttgcatg 6889

                                            
Query: 308  tcattactgttcttgtcaatcaaatctaccaa 339
            |||||| | |  ||||||||||||||||||||
Sbjct: 6888 tcattattatctttgtcaatcaaatctaccaa 6857
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0032H19
          Length = 126434

 Score =  133 bits (67), Expect = 4e-28
 Identities = 130/151 (86%)
 Strand = Plus / Minus

                                                                          
Query: 189    tggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaattt 248
              |||| |||||||| ||||| || || || ||||||| ||||||||||||||||||||| |
Sbjct: 123523 tggtgccttccaaaactttgacaacctcagacatttgaggccttcttttgcaatcaatct 123464

                                                                          
Query: 249    gcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatgt 308
              ||||||||||||||||||| ||||| ||||||||||  || |||  |||| || |||| |
Sbjct: 123463 gcaaacaccacattgcgagtttcatcatctcaattatttcttgccggtgtacttgcatat 123404

                                             
Query: 309    cattactgttcttgtcaatcaaatctaccaa 339
              |||| |||| |||||||||||||||| ||||
Sbjct: 123403 cattgctgtgcttgtcaatcaaatctgccaa 123373



 Score =  103 bits (52), Expect = 4e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                          
Query: 188    atggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaatt 247
              ||||| ||||||||  |||| || || || ||||||| |||||| ||||||||||| || 
Sbjct: 113552 atggtgccttccaatgcttttacaacctcagacatttgaggcctccttttgcaatcgatc 113493

                                                                          
Query: 248    tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
              ||||||||||||||||| |  ||||| ||||| ||||| || |||| |||| || |||||
Sbjct: 113492 tgcaaacaccacattgcaaatttcatcatctctattacttcttgctcgtgtacttgcatg 113433

                                              
Query: 308    tcattactgttcttgtcaatcaaatctaccaa 339
              |||||| | |  ||||||||||||||||||||
Sbjct: 113432 tcattattatctttgtcaatcaaatctaccaa 113401
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>gb|AY108371.1| Zea mays PCO102047 mRNA sequence
          Length = 738

 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                       
Query: 194 ccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaatttgcaaa 253
           |||||||||||||| || || ||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 328 ccttccaagacttttacgacctcggacattttgggccttcgtttgcaatcaatctgcaaa 387

                                         
Query: 254 caccacattgcgagcttcatgatctcaatt 283
           |||||||||||||||||||| |||| ||||
Sbjct: 388 caccacattgcgagcttcatcatctgaatt 417



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 64  atttcacctggggcctgatacatgtgaagctagaggtggaactga 108
           ||||||||| |||||||| || | |||||||||||||||| ||||
Sbjct: 198 atttcaccttgggcctgacacttctgaagctagaggtggagctga 242
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>ref|XM_549890.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1959

 Score =  103 bits (52), Expect = 4e-19
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                        
Query: 188  atggtaccttccaagactttaactacgtcggacattttaggccttcttttgcaatcaatt 247
            ||||| ||||||||  |||| || || || ||||||| |||||| ||||||||||| || 
Sbjct: 1841 atggtgccttccaatgcttttacaacctcagacatttgaggcctccttttgcaatcgatc 1782

                                                                        
Query: 248  tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
            ||||||||||||||||| |  ||||| ||||| ||||| || |||| |||| || |||||
Sbjct: 1781 tgcaaacaccacattgcaaatttcatcatctctattacttcttgctcgtgtacttgcatg 1722

                                            
Query: 308  tcattactgttcttgtcaatcaaatctaccaa 339
            |||||| | |  ||||||||||||||||||||
Sbjct: 1721 tcattattatctttgtcaatcaaatctaccaa 1690
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>ref|XM_471701.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2199

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 241  atcaatttgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgc 300
            |||| ||||||| ||||||||||| |||||||| || | ||| || |||| || ||||| 
Sbjct: 2025 atcattttgcaagcaccacattgcaagcttcatcatttgaatcacttcctcctggtgtga 1966

                                         
Query: 301  tagcatgtcattactgttcttgtcaatca 329
             | |||||||||||||| |||||||||||
Sbjct: 1965 gaccatgtcattactgtgcttgtcaatca 1937
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 241      atcaatttgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgc 300
                |||| ||||||| ||||||||||| |||||||| || | ||| || |||| || ||||| 
Sbjct: 13564244 atcattttgcaagcaccacattgcaagcttcatcatttgaatcacttcctcctggtgtga 13564303

                                             
Query: 301      tagcatgtcattactgttcttgtcaatca 329
                 | |||||||||||||| |||||||||||
Sbjct: 13564304 gaccatgtcattactgtgcttgtcaatca 13564332



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                            
Query: 248      tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
                ||||| ||||||||||| |||||||| || | ||| || |||| || |||||  | ||||
Sbjct: 13605376 tgcaagcaccacattgcaagcttcatcatttgaatcacttcctcctggtgtgacaccatg 13605435

                                      
Query: 308      tcattactgttcttgtcaatca 329
                |||||||||| ||| |||||||
Sbjct: 13605436 tcattactgtgcttatcaatca 13605457



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 246      tttgcaaacaccacattgcgagcttca 272
                ||||||| |||||||||||||||||||
Sbjct: 13638995 tttgcaagcaccacattgcgagcttca 13639021



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 246      tttgcaaacaccacattgcgagcttca 272
                ||||||| |||||||||||||||||||
Sbjct: 13619508 tttgcaagcaccacattgcgagcttca 13619534



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 248      tgcaaacaccacattgcgagcttcat 273
                ||||| ||||||||||||||||||||
Sbjct: 13573924 tgcaagcaccacattgcgagcttcat 13573949
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>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10,
             complete sequence
          Length = 133238

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                         
Query: 241   atcaatttgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgc 300
             |||| ||||||| ||||||||||| |||||||| || | ||| || |||| || ||||| 
Sbjct: 90707 atcattttgcaagcaccacattgcaagcttcatcatttgaatcacttcctcctggtgtga 90766

                                          
Query: 301   tagcatgtcattactgttcttgtcaatca 329
              | |||||||||||||| |||||||||||
Sbjct: 90767 gaccatgtcattactgtgcttgtcaatca 90795



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                          
Query: 248    tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgtgctagcatg 307
              ||||| ||||||||||| |||||||| || | ||| || |||| || |||||  | ||||
Sbjct: 131839 tgcaagcaccacattgcaagcttcatcatttgaatcacttcctcctggtgtgacaccatg 131898

                                    
Query: 308    tcattactgttcttgtcaatca 329
              |||||||||| ||| |||||||
Sbjct: 131899 tcattactgtgcttatcaatca 131920



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 248    tgcaaacaccacattgcgagcttcat 273
              ||||| ||||||||||||||||||||
Sbjct: 100387 tgcaagcaccacattgcgagcttcat 100412
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>ref|NM_188329.1| Oryza sativa (japonica cultivar-group), Ozsa8080 predicted mRNA
          Length = 2268

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 226  aggccttcttttgcaatcaatttgcaaacaccacattgcgagcttcatgatctcaattac 285
            ||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||  || ||
Sbjct: 2172 aggccttctgttgcaatcactctgcaagcaccacattgcaagcttcattatctttatcac 2113

                  
Query: 286  atcctg 291
            ||||||
Sbjct: 2112 atcctg 2107
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 226   aggccttcttttgcaatcaatttgcaaacaccacattgcgagcttcatgatctcaattac 285
             ||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||  || ||
Sbjct: 53362 aggccttctgttgcaatcactctgcaagcaccacattgcaagcttcattatctttatcac 53303

                   
Query: 286   atcctg 291
             ||||||
Sbjct: 53302 atcctg 53297



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 248   tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgt 298
             |||||||||||||| || |||||||| | |||||| || |||| |||||||
Sbjct: 57841 tgcaaacaccacatggcaagcttcatcacctcaatcacttcctccttgtgt 57791
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>ref|NM_188330.1| Oryza sativa (japonica cultivar-group), Ozsa8081 predicted mRNA
          Length = 2538

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 248  tgcaaacaccacattgcgagcttcatgatctcaattacatcctgcttgtgt 298
            |||||||||||||| || |||||||| | |||||| || |||| |||||||
Sbjct: 2357 tgcaaacaccacatggcaagcttcatcacctcaatcacttcctccttgtgt 2307
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>ref|XM_471708.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2469

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 246  tttgcaaacaccacattgcgagcttca 272
            ||||||| |||||||||||||||||||
Sbjct: 2290 tttgcaagcaccacattgcgagcttca 2264
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>ref|XM_471711.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2517

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 246  tttgcaaacaccacattgcgagcttca 272
            ||||||| |||||||||||||||||||
Sbjct: 2338 tttgcaagcaccacattgcgagcttca 2312
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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
             complete sequence
          Length = 187359

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 246   tttgcaaacaccacattgcgagcttca 272
             ||||||| |||||||||||||||||||
Sbjct: 33603 tttgcaagcaccacattgcgagcttca 33629



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 246   tttgcaaacaccacattgcgagcttca 272
             ||||||| |||||||||||||||||||
Sbjct: 14116 tttgcaagcaccacattgcgagcttca 14142
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>ref|NM_015172.2| Homo sapiens BAT2 domain containing 1 (BAT2D1), mRNA
          Length = 10383

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   gaagctagaggtggaactgagg 110
            ||||||||||||||||||||||
Sbjct: 5518 gaagctagaggtggaactgagg 5497
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>ref|XM_471702.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2796

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 248  tgcaaacaccacattgcgagcttcat 273
            ||||| ||||||||||||||||||||
Sbjct: 2615 tgcaagcaccacattgcgagcttcat 2590
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>emb|AL021579.1|HS598F2 Human DNA sequence from clone RP4-598F2 on chromosome 1q23.1-24.3
             Contains part of the gene for HBxAg transactivated protein
             2 (XTP2), complete sequence
          Length = 99886

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 89    gaagctagaggtggaactgagg 110
             ||||||||||||||||||||||
Sbjct: 67617 gaagctagaggtggaactgagg 67596
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>emb|AL162004.1|HSM802522 Homo sapiens mRNA; cDNA DKFZp434M1616 (from clone DKFZp434M1616)
          Length = 5630

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 89  gaagctagaggtggaactgagg 110
           ||||||||||||||||||||||
Sbjct: 895 gaagctagaggtggaactgagg 874
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>dbj|AB029019.2| Homo sapiens mRNA for KIAA1096 protein, partial cds
          Length = 7421

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   gaagctagaggtggaactgagg 110
            ||||||||||||||||||||||
Sbjct: 2464 gaagctagaggtggaactgagg 2443
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>dbj|AK124374.1| Homo sapiens cDNA FLJ42383 fis, clone UTERU2036623
          Length = 2282

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   gaagctagaggtggaactgagg 110
            ||||||||||||||||||||||
Sbjct: 1186 gaagctagaggtggaactgagg 1165
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>gb|AF488829.1| Homo sapiens HBxAg transactivated protein 2 (XTP2) mRNA, complete cds
          Length = 8106

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   gaagctagaggtggaactgagg 110
            ||||||||||||||||||||||
Sbjct: 5252 gaagctagaggtggaactgagg 5231
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>dbj|AK072639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133I20, full
           insert sequence
          Length = 4259

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 248 tgcaaacaccacattgcgagcttcat 273
           ||||| ||||||||||||||||||||
Sbjct: 130 tgcaagcaccacattgcgagcttcat 155
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>emb|AL096857.1|HS598F21A Novel human mRNA from chromosome 1, which has similarities to BAT2
            genes
          Length = 10174

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   gaagctagaggtggaactgagg 110
            ||||||||||||||||||||||
Sbjct: 5309 gaagctagaggtggaactgagg 5288
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>gb|AC129178.4| Mus musculus BAC clone RP23-217G18 from chromosome 16, complete
             sequence
          Length = 185769

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    catgtgaagctagaggtggaa 104
             |||||||||||||||||||||
Sbjct: 55054 catgtgaagctagaggtggaa 55074
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>gb|AC123654.9| Mus musculus chromosome 15, clone RP23-161D16, complete sequence
          Length = 182376

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tgatacatgtgaagctagag 98
             ||||||||||||||||||||
Sbjct: 50102 tgatacatgtgaagctagag 50083
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>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence
          Length = 154928

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    tctgcattcatggtaccttc 198
              ||||||||||||||||||||
Sbjct: 138757 tctgcattcatggtaccttc 138776
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>gb|AC103693.2| Homo sapiens chromosome 18, clone CTD-2522C24, complete sequence
          Length = 193404

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 273    tgatctcaattacatcctgcttgt 296
              ||||||||||||||||||| ||||
Sbjct: 162132 tgatctcaattacatcctgattgt 162109
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>gb|AC097498.3| Homo sapiens BAC clone RP11-326N15 from 4, complete sequence
          Length = 144511

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   attcacttgatttgtggcaa 155
             ||||||||||||||||||||
Sbjct: 39475 attcacttgatttgtggcaa 39456
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>emb|BX470176.11| Zebrafish DNA sequence from clone CH211-120C23 in linkage group 7,
             complete sequence
          Length = 176596

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gtggaactgaggagagcaca 118
             ||||||||||||||||||||
Sbjct: 92236 gtggaactgaggagagcaca 92217
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>gb|AC008245.6| Homo sapiens chromosome 18, clone RP11-146N18, complete sequence
          Length = 183749

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  tgatctcaattacatcctgcttgt 296
            ||||||||||||||||||| ||||
Sbjct: 2287 tgatctcaattacatcctgattgt 2264
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>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence
          Length = 185594

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tctgcattcatggtaccttc 198
             ||||||||||||||||||||
Sbjct: 99560 tctgcattcatggtaccttc 99541
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>gb|AC027290.31| Homo sapiens 12 BAC RP11-463O12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177332

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    ttttctcatttcacctgggg 76
             ||||||||||||||||||||
Sbjct: 60245 ttttctcatttcacctgggg 60264
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>emb|AL928682.11| Mouse DNA sequence from clone RP23-143K9 on chromosome X, complete
             sequence
          Length = 135431

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tgatacatgtgaagctagag 98
             ||||||||||||||||||||
Sbjct: 84356 tgatacatgtgaagctagag 84375
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>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete
             sequence
          Length = 185591

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tctgcattcatggtaccttc 198
             ||||||||||||||||||||
Sbjct: 99552 tctgcattcatggtaccttc 99533
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>emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chromosome X, complete
             sequence
          Length = 140246

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     ttacataagaatatctcatg 25
             ||||||||||||||||||||
Sbjct: 91928 ttacataagaatatctcatg 91909
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>emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chromosome X, complete
             sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    ctgatacatgtgaagctaga 97
             ||||||||||||||||||||
Sbjct: 62460 ctgatacatgtgaagctaga 62479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,298,006
Number of Sequences: 3902068
Number of extensions: 3298006
Number of successful extensions: 63251
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63131
Number of HSP's gapped (non-prelim): 120
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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