Clone Information

BLAST Search Result

Clone Name	rbaal29f21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_463324.1\| Oryza sativa (japonica cultivar-group), predic...	131	3e-27
2	dbj\|AK111947.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
3	dbj\|AK111703.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
5	dbj\|AP003334.4\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
6	dbj\|AK111702.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	3e-21
7	ref\|XM_476026.1\| Oryza sativa (japonica cultivar-group), predic...	100	1e-17
8	dbj\|AK111994.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	1e-17
9	dbj\|AK111911.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	1e-17
10	gb\|AC130728.2\| Oryza sativa (japonica cultivar-group) chromosome...	96	2e-16
11	gb\|AC130727.1\| Oryza sativa (japonica cultivar-group) chromosome...	96	2e-16
12	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	2e-16
13	gb\|AY103921.1\| Zea mays PCO126557 mRNA sequence	74	6e-10
14	gb\|BT019119.1\| Zea mays clone Contig731.F mRNA sequence	66	2e-07
15	gb\|DQ196179.1\|DQ196179S1 Triticum monococcum cultivar DV92 putat...	56	2e-04
16	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.58
17	dbj\|AP003714.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.58
18	ref\|NM_191682.1\| Oryza sativa (japonica cultivar-group), predic...	42	2.3
19	gb\|AC113548.22\| Mus musculus chromosome 9, clone RP23-268F15, co...	42	2.3
20	emb\|AL772178.2\| Human DNA sequence from clone RP13-248L12 on chr...	42	2.3
21	dbj\|AP003273.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
22	gb\|AC164699.2\| Echinops telfairi, clone Echinops telfairi -24221...	40	9.0
23	gb\|AC123549.5\| Mus musculus BAC clone RP24-91K17 from chromosome...	40	9.0
24	gb\|AC004417.1\| Homo sapiens BAC clone CTA-325M7 from 7, complete...	40	9.0
25	gb\|AC080144.11\| Mus musculus chromosome 6, clone RP23-237K24, co...	40	9.0
26	emb\|CT025376.2\| Xenopus tropicalis finished cDNA, clone TGas140b22	40	9.0
27	ref\|XM_764935.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	9.0
28	emb\|AL133375.25\| Human DNA sequence from clone RP3-330M21 on chr...	40	9.0
29	emb\|AL024505.1\|HS112L6 Human DNA sequence from clone RP1-112L6 o...	40	9.0
30	gb\|AE014175.1\| Mus musculus piebald deletion region section 3 of...	40	9.0
31	gb\|AC153384.4\| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cance...	40	9.0
32	gb\|AC145987.2\| Pan troglodytes BAC clone RP43-165D6 from chromos...	40	9.0
33	gb\|AC099744.3\| Papio anubis clone RP41-65E12, complete sequence	40	9.0
34	dbj\|BS000207.2\| Pan troglodytes chromosome 22 clone:PTB-155J22, ...	40	9.0
35	dbj\|BS000206.1\| Pan troglodytes chromosome 22 clone:RP43-160M11,...	40	9.0
36	ref\|NM_031739.1\| Rattus norvegicus potassium voltage gated chann...	40	9.0
37	gb\|AY919674.1\| Homo sapiens amyloid beta (A4) precursor protein ...	40	9.0
38	dbj\|AP001695.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.0
39	gb\|U42975.1\|RNU42975 Rattus norvegicus Shal-related potassium ch...	40	9.0
40	gb\|L48619.1\|RATKV43R Rattus norvegicus voltage-gated K+ channel ...	40	9.0
41	dbj\|AP000143.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	40	9.0
42	dbj\|D87675.1\| Homo sapiens DNA for amyloid precursor protein, co...	40	9.0
43	dbj\|AP001594.1\| Homo sapiens genomic DNA, chromosome 21, clone:K...	40	9.0
44	dbj\|AP001439.1\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	9.0
45	dbj\|AP000090.1\| Homo sapiens genomic DNA of 21q22.1, APP related...	40	9.0

>ref|XM_463324.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1506

 Score =  131 bits (66), Expect = 3e-27
 Identities = 216/266 (81%)
 Strand = Plus / Minus

                                                                        
Query: 396  tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
            |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 1406 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 1347

                                                                        
Query: 456  aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
            |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 1346 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 1287

                                                                        
Query: 516  aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaa 575
            |  |||||||||||||||||| ||||||||||| || |  ||| |||||||||||| |  
Sbjct: 1286 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaacatt 1227

                                                                        
Query: 576  gtcgaactggacaacacagcttccttcggtgcggacagatctggtctgactggtgacttc 635
            |||||||| || |||| ||| || || |  | |||||  ||||| || || || ||||||
Sbjct: 1226 gtcgaactagagaacaaagcatcttttgaagtggacatgtctggcctaaccggggacttc 1167

                                      
Query: 636  tgtttcgataagctgcctgcatttat 661
            ||||| ||||||||||| ||||||||
Sbjct: 1166 tgttttgataagctgccagcatttat 1141



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1494 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 1438

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>dbj|AK111947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E09, full
           insert sequence
          Length = 1340

 Score =  131 bits (66), Expect = 3e-27
 Identities = 216/266 (81%)
 Strand = Plus / Minus

                                                                       
Query: 396 tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
           |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 746 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 687

                                                                       
Query: 456 aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
           |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 686 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 627

                                                                       
Query: 516 aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaa 575
           |  |||||||||||||||||| ||||||||||| || |  ||| |||||||||||| |  
Sbjct: 626 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaacatt 567

                                                                       
Query: 576 gtcgaactggacaacacagcttccttcggtgcggacagatctggtctgactggtgacttc 635
           |||||||| || |||| ||| || || |  | |||||  ||||| || || || ||||||
Sbjct: 566 gtcgaactagagaacaaagcatcttttgaagtggacatgtctggcctaaccggggacttc 507

                                     
Query: 636 tgtttcgataagctgcctgcatttat 661
           ||||| ||||||||||| ||||||||
Sbjct: 506 tgttttgataagctgccagcatttat 481



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                    
Query: 323 cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
           |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 834 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 778



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 113  cctttatttcgccagccagcccccatttctttgggtaagcaggctgcc 160
            ||||||||| ||||||||||| ||| | ||| |||| |||||||||||
Sbjct: 1010 cctttatttagccagccagcctccagtacttcgggtcagcaggctgcc 963

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>dbj|AK111703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011C07, full
            insert sequence
          Length = 1851

 Score =  131 bits (66), Expect = 3e-27
 Identities = 216/266 (81%)
 Strand = Plus / Minus

                                                                        
Query: 396  tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
            |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 1596 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 1537

                                                                        
Query: 456  aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
            |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 1536 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 1477

                                                                        
Query: 516  aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaa 575
            |  |||||||||||||||||| ||||||||||| || |  ||| |||||||||||| |  
Sbjct: 1476 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaacatt 1417

                                                                        
Query: 576  gtcgaactggacaacacagcttccttcggtgcggacagatctggtctgactggtgacttc 635
            |||||||| || |||| ||| || || |  | |||||  ||||| || || || ||||||
Sbjct: 1416 gtcgaactagagaacaaagcatcttttgaagtggacatgtctggcctaaccggggacttc 1357

                                      
Query: 636  tgtttcgataagctgcctgcatttat 661
            ||||| ||||||||||| ||||||||
Sbjct: 1356 tgttttgataagctgccagcatttat 1331



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1684 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 1628

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                            
Query: 396      tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
                |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 21879459 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 21879400

                                                                            
Query: 456      aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
                |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 21879399 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 21879340

                                                                        
Query: 516      aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaa 571
                |  |||||||||||||||||| ||||||||||| || |  ||| ||||||||||||
Sbjct: 21879339 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaa 21879284



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                         
Query: 323      cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
                |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 21879547 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 21879491



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 113      cctttatttcgccagccagcccccatttctttgggtaagcaggctgcc 160
                ||||||||| ||||||||||| ||| | ||| |||| |||||||||||
Sbjct: 21879723 cctttatttagccagccagcctccagtacttcgggtcagcaggctgcc 21879676



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 630      gacttctgtttcgataagctgcctgcatttat 661
                ||||||||||| ||||||||||| ||||||||
Sbjct: 21879104 gacttctgttttgataagctgccagcatttat 21879073



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 518      atctcggctactagaaacagcaggtcgccttga 550
                |||||||||||| ||||||||||| | ||||||
Sbjct: 29429055 atctcggctacttgaaacagcaggcctccttga 29429023

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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                          
Query: 396    tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
              |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 108752 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 108693

                                                                          
Query: 456    aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
              |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 108692 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 108633

                                                                      
Query: 516    aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaa 571
              |  |||||||||||||||||| ||||||||||| || |  ||| ||||||||||||
Sbjct: 108632 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaa 108577



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                       
Query: 323    cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
              |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 108840 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 108784



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 113    cctttatttcgccagccagcccccatttctttgggtaagcaggctgcc 160
              ||||||||| ||||||||||| ||| | ||| |||| |||||||||||
Sbjct: 109016 cctttatttagccagccagcctccagtacttcgggtcagcaggctgcc 108969



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 630    gacttctgtttcgataagctgcctgcatttat 661
              ||||||||||| ||||||||||| ||||||||
Sbjct: 108397 gacttctgttttgataagctgccagcatttat 108366

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>dbj|AK111702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G21, full
            insert sequence
          Length = 2953

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                        
Query: 396  tgcctggggtcagagtagtcaagcgtgtgtgaggccctccgtggagctgagtttctctgg 455
            |||||||||||||| ||||| ||| | ||||||  ||| |||||||  |   |||| |||
Sbjct: 2698 tgcctggggtcagaatagtcgagcatctgtgagctcctacgtggaggagcacttctttgg 2639

                                                                        
Query: 456  aatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgcttggc 515
            |||||||| |||||  |||||||||  || ||||| |||||||||||||| |||||| ||
Sbjct: 2638 aatgtcccaggacttgcatctggtgtgcggctacgtgatggttcagcttcgctgctttgc 2579

                                                                    
Query: 516  aaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaa 571
            |  |||||||||||||||||| ||||||||||| || |  ||| ||||||||||||
Sbjct: 2578 agttctcggctactagaaacaacaggtcgccttaaggatccgcttgaccgacccaa 2523



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2786 cctatcgttggcatcaaaatttaggccttggatgcctcttatagtggactcatagtt 2730



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 630  gacttctgtttcgataagctgcctgcatttat 661
            ||||||||||| ||||||||||| ||||||||
Sbjct: 2343 gacttctgttttgataagctgccagcatttat 2312

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>ref|XM_476026.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1422

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 118/140 (84%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 453  tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
            ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 1262 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 1203

                                                                        
Query: 513  ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
            ||    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||||
Sbjct: 1202 ggt---tctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaa 1146

                                
Query: 573  aaagtcgaactggacaacac 592
            |||||||||||||| |||||
Sbjct: 1145 aaagtcgaactggagaacac 1126



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 1410 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 1354

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>dbj|AK111994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D10, full
            insert sequence
          Length = 2161

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 118/140 (84%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 453  tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
            ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 1447 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 1388

                                                                        
Query: 513  ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
            ||    |||||||||||||| |||||||| ||||||||| || ||| |||||| ||||||
Sbjct: 1387 ggt---tctcggctactagagacagcaggccgccttgaggacccgcttgaccgtcccaaa 1331

                                
Query: 573  aaagtcgaactggacaacac 592
            |||||||||||||| |||||
Sbjct: 1330 aaagtcgaactggagaacac 1311



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 1595 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 1539

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>dbj|AK111911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M05, full
            insert sequence
          Length = 2164

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 118/140 (84%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 453  tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
            ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 1453 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 1394

                                                                        
Query: 513  ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
            ||    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||||
Sbjct: 1393 ggt---tctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaa 1337

                                
Query: 573  aaagtcgaactggacaacac 592
            |||||||||||||| |||||
Sbjct: 1336 aaagtcgaactggagaacac 1317



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 323  cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
            |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 1601 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 1545

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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
              complete sequence
          Length = 142196

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                          
Query: 453    tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
              ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 130189 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 130248

                                                                          
Query: 513    ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
              ||    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||||
Sbjct: 130249 ggt---tctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaa 130305

                            
Query: 573    aaagtcgaactgga 586
              ||||||||||||||
Sbjct: 130306 aaagtcgaactgga 130319



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                       
Query: 323    cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
              |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 130041 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 130097

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>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                         
Query: 453   tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
             ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 41740 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 41681

                                                                         
Query: 513   ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
             ||    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||||
Sbjct: 41680 ggt---tctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaa 41624

                           
Query: 573   aaagtcgaactgga 586
             ||||||||||||||
Sbjct: 41623 aaagtcgaactgga 41610



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 323   cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
             |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 41888 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 41832

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                            
Query: 453      tggaatgtccctggactcacatctggtgcacgactacgcgatggttcagcttcactgctt 512
                ||||||| ||| |||||  |||||| || ||||||||| ||  | ||||||||| |||||
Sbjct: 29351532 tggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgctt 29351591

                                                                            
Query: 513      ggcaaatctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaa 572
                ||    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||||
Sbjct: 29351592 ggt---tctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaa 29351648

                              
Query: 573      aaagtcgaactgga 586
                ||||||||||||||
Sbjct: 29351649 aaagtcgaactgga 29351662



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                         
Query: 323      cctatcattggcatcgaaatttaggccttggatgccccttatagtggactcgtagtt 379
                |||||||| | |||||||||||||||| |||||||||| ||| || |||||||||||
Sbjct: 29351384 cctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagtt 29351440

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>gb|AY103921.1| Zea mays PCO126557 mRNA sequence
          Length = 1468

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 519 tctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaagtc 578
           |||||||||||||| |||||||| ||||||||  |  ||| ||| || ||||||||||||
Sbjct: 790 tctcggctactagatacagcaggccgccttgacgatccgcttgaacgtcccaaaaaagtc 731

                            
Query: 579 gaactggacaacacagc 595
           |||||||| ||||||||
Sbjct: 730 gaactggagaacacagc 714

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>gb|BT019119.1| Zea mays clone Contig731.F mRNA sequence
          Length = 1034

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 519 tctcggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaagtc 578
           |||||||||||||| |||||||| ||||||||  |  ||| ||| || ||||||| ||||
Sbjct: 512 tctcggctactagagacagcaggccgccttgacgatccgcttgagcgtcccaaaagagtc 453

                            
Query: 579 gaactggacaacacagc 595
           |||||||| ||||||||
Sbjct: 452 gaactggagaacacagc 436

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>gb|DQ196179.1|DQ196179S1 Triticum monococcum cultivar DV92 putative protein kinase ADK1
           gene, partial cds
          Length = 839

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 523 ggctactagaaacagcaggtcgccttgagaacacgcctgaccgacccaaaaaagtcgaac 582
           |||| ||||| |||||||||||||||||| |  ||| |||||| ||||  ||||||||||
Sbjct: 80  ggctgctagagacagcaggtcgccttgaggatccgcttgaccgtcccagcaaagtcgaac 139

               
Query: 583 tgga 586
           ||||
Sbjct: 140 tgga 143

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 152      caggctgcctcaccgctgcagc 173
                ||||||||||||||||||||||
Sbjct: 21322817 caggctgcctcaccgctgcagc 21322796

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>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0656E03
          Length = 181786

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 152    caggctgcctcaccgctgcagc 173
              ||||||||||||||||||||||
Sbjct: 118193 caggctgcctcaccgctgcagc 118172

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>ref|NM_191682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1419

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 518  atctcggctactagaaacagcaggtcgccttga 550
            |||||||||||| ||||||||||| | ||||||
Sbjct: 1194 atctcggctacttgaaacagcaggcctccttga 1162

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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 138    tttctttgggtaagcaggctg 158
              |||||||||||||||||||||
Sbjct: 128451 tttctttgggtaagcaggctg 128471

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>emb|AL772178.2| Human DNA sequence from clone RP13-248L12 on chromosome X, complete
             sequence
          Length = 19345

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   tcacatggtgaagtagttcag 208
             |||||||||||||||||||||
Sbjct: 10742 tcacatggtgaagtagttcag 10722

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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F09
          Length = 138277

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 518    atctcggctactagaaacagcaggtcgccttga 550
              |||||||||||| ||||||||||| | ||||||
Sbjct: 124117 atctcggctacttgaaacagcaggcctccttga 124085

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>gb|AC164699.2| Echinops telfairi, clone Echinops telfairi -24221157A1, complete
            sequence
          Length = 38044

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 136  catttctttgggtaagcaggctgc 159
            |||||| |||||||||||||||||
Sbjct: 8940 catttcattgggtaagcaggctgc 8963

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>gb|AC123549.5| Mus musculus BAC clone RP24-91K17 from chromosome 6, complete sequence
          Length = 182759

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    agaagatactggtagtgaaa 297
              ||||||||||||||||||||
Sbjct: 136482 agaagatactggtagtgaaa 136501

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>gb|AC004417.1| Homo sapiens BAC clone CTA-325M7 from 7, complete sequence
          Length = 127514

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   tggacaacacagcttccttc 602
             ||||||||||||||||||||
Sbjct: 89244 tggacaacacagcttccttc 89225

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>gb|AC080144.11| Mus musculus chromosome 6, clone RP23-237K24, complete sequence
          Length = 184091

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    agaagatactggtagtgaaa 297
              ||||||||||||||||||||
Sbjct: 154569 agaagatactggtagtgaaa 154550

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>emb|CT025376.2| Xenopus tropicalis finished cDNA, clone TGas140b22
          Length = 2062

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  aaaaggaaaactgtacagag 63
           ||||||||||||||||||||
Sbjct: 145 aaaaggaaaactgtacagag 164

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>ref|XM_764935.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_77_8372_11872)
            partial mRNA
          Length = 3501

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   gaaagcagcatctcaacgca 42
            ||||||||||||||||||||
Sbjct: 1865 gaaagcagcatctcaacgca 1846

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>emb|AL133375.25| Human DNA sequence from clone RP3-330M21 on chromosome 6 Contains the
             3' end of the SRF gene for serum response factor (c-fos
             serum response element-binding transcription factor), a
             gene for a novel protein (KIAA0076 KIAA0708), the gene for
             a putative c-Myc-responsive protein (RCL), the gene for
             KIAA1855 protein and CpG islands, complete sequence
          Length = 117071

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   ccagccagcccccatttctttggg 147
             ||||||||||||||| ||||||||
Sbjct: 55642 ccagccagcccccatctctttggg 55665

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>emb|AL024505.1|HS112L6 Human DNA sequence from clone RP1-112L6 on chromosome 6q16, complete
              sequence
          Length = 144097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 581    actggacaacacagcttcct 600
              ||||||||||||||||||||
Sbjct: 105307 actggacaacacagcttcct 105326

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>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
              sequence
          Length = 404829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     aaggaaaactgtacagaggcaaaa 69
              |||||||||||||| |||||||||
Sbjct: 117010 aaggaaaactgtactgaggcaaaa 117033

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>gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203979

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    tctctggaatgtccctggac 468
              ||||||||||||||||||||
Sbjct: 158185 tctctggaatgtccctggac 158166

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>gb|AC145987.2| Pan troglodytes BAC clone RP43-165D6 from chromosome 7, complete
             sequence
          Length = 158415

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   tggacaacacagcttccttc 602
             ||||||||||||||||||||
Sbjct: 89261 tggacaacacagcttccttc 89242

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>gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence
          Length = 173295

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   tggacaacacagcttccttc 602
             ||||||||||||||||||||
Sbjct: 49267 tggacaacacagcttccttc 49248

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>dbj|BS000207.2| Pan troglodytes chromosome 22 clone:PTB-155J22, map 22, complete
            sequences
          Length = 193476

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gcagatcatatactatacac 260
            ||||||||||||||||||||
Sbjct: 5379 gcagatcatatactatacac 5398

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>dbj|BS000206.1| Pan troglodytes chromosome 22 clone:RP43-160M11, map 22, complete
              sequences
          Length = 181571

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gcagatcatatactatacac 260
              ||||||||||||||||||||
Sbjct: 156150 gcagatcatatactatacac 156169

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>ref|NM_031739.1| Rattus norvegicus potassium voltage gated channel, Shal-related
            family, member 3 (Kcnd3), mRNA
          Length = 7258

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  agacttgtgcctggggtcag 408
            ||||||||||||||||||||
Sbjct: 2794 agacttgtgcctggggtcag 2813

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>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II,
             Alzheimer disease) (APP) gene, complete cds
          Length = 293960

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 34190 gcagatcatatactatacac 34171

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>dbj|AP001695.1| Homo sapiens genomic DNA, chromosome 21q, section 39/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gcagatcatatactatacac 260
              ||||||||||||||||||||
Sbjct: 206401 gcagatcatatactatacac 206420

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>gb|U42975.1|RNU42975 Rattus norvegicus Shal-related potassium channel Kv4.3 mRNA, complete
            cds
          Length = 7258

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  agacttgtgcctggggtcag 408
            ||||||||||||||||||||
Sbjct: 2794 agacttgtgcctggggtcag 2813

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>gb|L48619.1|RATKV43R Rattus norvegicus voltage-gated K+ channel (Kv43) mRNA, complete cds
          Length = 4262

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  agacttgtgcctggggtcag 408
            ||||||||||||||||||||
Sbjct: 2359 agacttgtgcctggggtcag 2378

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>dbj|AP000143.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 8/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 41170 gcagatcatatactatacac 41189

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>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds
          Length = 301692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 41442 gcagatcatatactatacac 41423

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>dbj|AP001594.1| Homo sapiens genomic DNA, chromosome 21, clone:KB580H10, APP-D21S292
             region, complete sequence
          Length = 100634

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 11836 gcagatcatatactatacac 11855

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>dbj|AP001439.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2,, clone:S459,
             LL56-APP region, complete sequence
          Length = 83661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 42219 gcagatcatatactatacac 42238

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>dbj|AP000090.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 7/7
          Length = 121597

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagatcatatactatacac 260
             ||||||||||||||||||||
Sbjct: 80156 gcagatcatatactatacac 80175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,980,500
Number of Sequences: 3902068
Number of extensions: 4980500
Number of successful extensions: 83194
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82984
Number of HSP's gapped (non-prelim): 199
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result