ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009335.1| Triticum aestivum clone wlm4.pk0009.a8:fis, full ... 341 2e-90
2ref|XM_506641.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 2e-07
3ref|XM_450347.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-07
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
5dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
6dbj|AK104755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
7dbj|AK067978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
8dbj|AK061499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
9emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, ... 58 4e-05
10gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 46 0.15
11ref|NM_124147.2| Arabidopsis thaliana binding / transporter AT5G... 44 0.59
12emb|BX830100.1|CNS0A264 Arabidopsis thaliana Full-length cDNA Co... 44 0.59
13emb|BX829593.1|CNS0A25C Arabidopsis thaliana Full-length cDNA Co... 44 0.59
14dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.59
15emb|CR354435.20| Zebrafish DNA sequence from clone CH211-113A14 ... 44 0.59
16ref|XM_850579.1| PREDICTED: Canis familiaris similar to hematopo... 42 2.3
17ref|XM_543618.2| PREDICTED: Canis familiaris similar to hematopo... 42 2.3
18emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 2.3
19dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
20dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
21gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 9.2
22ref|XM_423393.1| PREDICTED: Gallus gallus similar to Transcripti... 40 9.2
23ref|XM_423117.1| PREDICTED: Gallus gallus similar to Hermansky-P... 40 9.2
24ref|XM_362521.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 9.2
25ref|XM_459939.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 9.2
26gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's ... 40 9.2
27gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, com... 40 9.2
28emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in l... 40 9.2
29gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 9.2
30emb|AL954705.14| Human DNA sequence from clone RP13-15M17 on chr... 40 9.2
31gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 9.2
32ref|NM_001031580.1| Gallus gallus similar to Hermansky-Pudlak sy... 40 9.2
33emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 9.2
34emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 9.2
35emb|AJ720774.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.2
36gb|AC113613.4| Homo sapiens BAC clone RP11-511I21 from 4, comple... 40 9.2
37gb|AC092709.2| Homo sapiens chromosome 8, clone RP11-509P12, com... 40 9.2
38dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 40 9.2
39dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 9.2
40gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, com... 40 9.2
41gb|AF397467.1|AF397467 Ictalurus punctatus novel immune-type rec... 40 9.2
42gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123... 40 9.2
43emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in... 40 9.2
44gb|AC157935.3| Mus musculus chromosome 5, clone RP24-228K8, comp... 40 9.2
45gb|AC024246.8| Homo sapiens BAC clone RP11-643O14 from 2, comple... 40 9.2
46gb|AE009591.1| Brucella melitensis 16M chromosome I, section 148... 40 9.2
47gb|AF242862.1|AF242862S1 Homo sapiens coxsackie virus and adenov... 40 9.2
48gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 9.2
49dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, ... 40 9.2
50gb|AF200465.1|AF200465 Homo sapiens coxsackievirus and adenoviru... 40 9.2
51emb|CR925804.8| Zebrafish DNA sequence from clone CH211-151M7 in... 40 9.2
52gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, com... 40 9.2
53gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 40 9.2
54dbj|AP001670.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.2
55emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 9.2
56dbj|AP000963.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.2
57emb|AL663100.12| Human DNA sequence from clone RP5-1052J3 on chr... 40 9.2 
>gb|BT009335.1| Triticum aestivum clone wlm4.pk0009.a8:fis, full insert mRNA sequence
          Length = 1660

 Score =  341 bits (172), Expect = 2e-90
 Identities = 225/242 (92%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                        
Query: 434  ccttcgatggtgatcctgttgaaggagcgggaaatgccgtcacctcccttgaggctgtgg 493
            |||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||
Sbjct: 1126 ccttcgatggtgatcctgctgaaggagcgggaaatgccgtcgccccccttgaggttgtgg 1067

                                                                        
Query: 494  agttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggcaccctc 553
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 agctccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggcaccctc 1007

                                                                        
Query: 554  acatgcatcgacccttgcttcacggggccggcgccgtcctcctggttcctcgcagcttgc 613
            ||||||||||||||||||||| |||||||| ||| |   ||||||||||||  |||||||
Sbjct: 1006 acatgcatcgacccttgcttcgcggggccgacgctg---tcctggttcctcagagcttgc 950

                                                                        
Query: 614  tgcttcacatagttgtacagctgctggtggaaaggatggtcgtacgagtagcagtcgact 673
            |||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct: 949  tgcttcacatagttgtacagctcctggtggaatggatgatcatacgagtagcagtcgact 890

              
Query: 674  tc 675
            ||
Sbjct: 889  tc 888



 Score =  208 bits (105), Expect = 2e-50
 Identities = 243/281 (86%), Gaps = 21/281 (7%)
 Strand = Plus / Minus

                                                                        
Query: 89   ttccctgccatgagaagcatggaaacagtaacgcgcaaatggtacattacatccattagc 148
            |||||||||||||||||||||||||||||||| |||||||||||||     |||||||| 
Sbjct: 1471 ttccctgccatgagaagcatggaaacagtaactcgcaaatggtaca-----tccattaga 1417

                                                                        
Query: 149  agggttaatcatagctaaattactaccaccatcttacgacaacacgatacagactcaact 208
              ||||||||| | |||| |||||||||   |||| ||||| ||||||||||||||| ||
Sbjct: 1416 caggttaatcaaa-ctaa-ttactacca---tctt-cgacaccacgatacagactca-ct 1364

                                                                        
Query: 209  cggttattagaatccgatgttttactactgctgctactacttcctctaccgacatgatcc 268
            |||||||||||||||||||     |||||||||   ||||||||||||| || |||||||
Sbjct: 1363 cggttattagaatccgatg-----ctactgctg---ctacttcctctactgatatgatcc 1312

                                                                        
Query: 269  tagtcgagccttgcagccagcggttacaatgcaagcaagaaccgccataaaccccagaga 328
            || |||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||  
Sbjct: 1311 tactcgagctttgcagccagcggttacaacgcaagcaagaaccgttataaaccccagaat 1252

                                                     
Query: 329  aatcttctggcgtcaaataagatagcgataagcgattacct 369
            ||||||||||||||||||||||||   ||||||||||||||
Sbjct: 1251 aatcttctggcgtcaaataagata-aaataagcgattacct 1212
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>ref|XM_506641.1| PREDICTED Oryza sativa (japonica cultivar-group), P0523B07.38-1 mRNA
          Length = 1718

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 489  tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
            ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 1155

                                     
Query: 549  ccctcacatgcatcgacccttgctt 573
            |   ||||||||| || ||||||||
Sbjct: 1154 catccacatgcattgagccttgctt 1130
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>ref|XM_450347.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1718

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 489  tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
            ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 1155

                                     
Query: 549  ccctcacatgcatcgacccttgctt 573
            |   ||||||||| || ||||||||
Sbjct: 1154 catccacatgcattgagccttgctt 1130
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                           
Query: 489     tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
               ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 4296000 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 4296059

                                        
Query: 549     ccctcacatgcatcgacccttgctt 573
               |   ||||||||| || ||||||||
Sbjct: 4296060 catccacatgcattgagccttgctt 4296084



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 229      tttactactgctgctactact 249
                |||||||||||||||||||||
Sbjct: 20638711 tttactactgctgctactact 20638731
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0523B07
          Length = 170510

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                          
Query: 489    tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
              ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 119759 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 119818

                                       
Query: 549    ccctcacatgcatcgacccttgctt 573
              |   ||||||||| || ||||||||
Sbjct: 119819 catccacatgcattgagccttgctt 119843
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>dbj|AK104755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G03, full
            insert sequence
          Length = 1718

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 489  tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
            ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 1155

                                     
Query: 549  ccctcacatgcatcgacccttgctt 573
            |   ||||||||| || ||||||||
Sbjct: 1154 catccacatgcattgagccttgctt 1130
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>dbj|AK067978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123M11, full
            insert sequence
          Length = 2332

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 489  tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
            ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 1708 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 1649

                                     
Query: 549  ccctcacatgcatcgacccttgctt 573
            |   ||||||||| || ||||||||
Sbjct: 1648 catccacatgcattgagccttgctt 1624
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>dbj|AK061499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D09, full
            insert sequence
          Length = 1718

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 489  tgtggagttccgactggatcgtctccatgatcttggcctcctccaggtccggcgtcggca 548
            ||||||| ||||| | |||||||||||||||||||||||| ||||| || || || ||||
Sbjct: 1214 tgtggagctccgattcgatcgtctccatgatcttggcctcttccagatcaggtgtgggca 1155

                                     
Query: 549  ccctcacatgcatcgacccttgctt 573
            |   ||||||||| || ||||||||
Sbjct: 1154 catccacatgcattgagccttgctt 1130
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>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete
            sequence
          Length = 83989

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                        
Query: 505  gatcgtctccatgatcttggcctcctccaggtccggcgtcggcaccctcacatgcatcga 564
            |||||||||||||||||||||||| ||||| || || || |||||   ||||||||| ||
Sbjct: 2688 gatcgtctccatgatcttggcctcttccagatcaggtgtgggcacatccacatgcattga 2629

                     
Query: 565  cccttgctt 573
             ||||||||
Sbjct: 2628 gccttgctt 2620
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>gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH077A05, complete sequence
          Length = 113253

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 617   ttcacatagttgtacagctgctggtggaaaggatg 651
             |||||||||||||| ||||| || |||||||||||
Sbjct: 21821 ttcacatagttgtatagctgttgatggaaaggatg 21787
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>ref|NM_124147.2| Arabidopsis thaliana binding / transporter AT5G47730 mRNA, complete
            cds
          Length = 1804

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 614  tgcttcacatagttgtacagctgctggtggaaaggatg 651
            ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 1307 tgcttcacatagttgtatagctgttgatggaagggatg 1270
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>emb|BX830100.1|CNS0A264 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB59ZH10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1273

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 614 tgcttcacatagttgtacagctgctggtggaaaggatg 651
           ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 889 tgcttcacatagttgtatagctgttgatggaagggatg 852
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>emb|BX829593.1|CNS0A25C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 658

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 614 tgcttcacatagttgtacagctgctggtggaaaggatg 651
           ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 398 tgcttcacatagttgtatagctgttgatggaagggatg 361
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>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
          Length = 82503

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 614   tgcttcacatagttgtacagctgctggtggaaaggatg 651
             ||||||||||||||||| ||||| || ||||| |||||
Sbjct: 12027 tgcttcacatagttgtatagctgttgatggaagggatg 12064
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>emb|CR354435.20| Zebrafish DNA sequence from clone CH211-113A14 in linkage group 25,
              complete sequence
          Length = 167326

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 228    ttttactactgctgctactact 249
              ||||||||||||||||||||||
Sbjct: 162001 ttttactactgctgctactact 161980
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>ref|XM_850579.1| PREDICTED: Canis familiaris similar to hematopoietic protein 1,
           transcript variant 2 (LOC486492), mRNA
          Length = 3714

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 143 attagcagggttaatcatagc 163
           |||||||||||||||||||||
Sbjct: 789 attagcagggttaatcatagc 769
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>ref|XM_543618.2| PREDICTED: Canis familiaris similar to hematopoietic protein 1,
           transcript variant 1 (LOC486492), mRNA
          Length = 3744

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 143 attagcagggttaatcatagc 163
           |||||||||||||||||||||
Sbjct: 789 attagcagggttaatcatagc 769
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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tactactgctgctactacttc 251
              |||||||||||||||||||||
Sbjct: 114496 tactactgctgctactacttc 114516



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tactactgctgctactacttc 251
              |||||||||||||||||||||
Sbjct: 114367 tactactgctgctactacttc 114387



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tactactgctgctactacttc 251
              |||||||||||||||||||||
Sbjct: 114274 tactactgctgctactacttc 114294
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   tttactactgctgctactact 249
             |||||||||||||||||||||
Sbjct: 32322 tttactactgctgctactact 32342
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    tttactactgctgctactact 249
              |||||||||||||||||||||
Sbjct: 104369 tttactactgctgctactact 104389
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    cgggccttcgatggtgatcc 449
              ||||||||||||||||||||
Sbjct: 377747 cgggccttcgatggtgatcc 377766
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>ref|XM_423393.1| PREDICTED: Gallus gallus similar to Transcription factor-like 1
           (LOC425660), mRNA
          Length = 1852

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 511 ctccatgatcttggcctcctccag 534
           |||| |||||||||||||||||||
Sbjct: 568 ctccgtgatcttggcctcctccag 545
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>ref|XM_423117.1| PREDICTED: Gallus gallus similar to Hermansky-Pudlak syndrome 1
           protein isoform a; Hermansky-Pudlak syndrome gene;
           Hermansky-Pudlak syndrome (LOC425344), mRNA
          Length = 1235

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 actactgctgctactacttcctct 255
           |||||||||||| |||||||||||
Sbjct: 845 actactgctgctcctacttcctct 868
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>ref|XM_362521.1| Magnaporthe grisea 70-15 hypothetical protein (MG08104.4) partial
            mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 519  tcttggcctcctccaggtcc 538
            ||||||||||||||||||||
Sbjct: 1021 tcttggcctcctccaggtcc 1002
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>ref|XM_459939.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E15136g)
            partial mRNA
          Length = 1104

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 1049 ttactactgctgctactact 1068
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>gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 176067

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 38268 ttactactgctgctactact 38287
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>gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, complete sequence
          Length = 172155

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   tactactgctgctactactt 250
             ||||||||||||||||||||
Sbjct: 14668 tactactgctgctactactt 14649
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>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1,
             complete sequence
          Length = 80060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 43544 ttactactgctgctactact 43563



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 43127 ttactactgctgctactact 43146



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 42833 ttactactgctgctactact 42852
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gaaccgccataaaccccaga 326
              ||||||||||||||||||||
Sbjct: 152833 gaaccgccataaaccccaga 152852
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>emb|AL954705.14| Human DNA sequence from clone RP13-15M17 on chromosome 1, complete
            sequence
          Length = 66275

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 5655 ttactactgctgctactact 5674
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 376     gcggcgcgatctcgggcgct 395
               ||||||||||||||||||||
Sbjct: 2872645 gcggcgcgatctcgggcgct 2872664
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>ref|NM_001031580.1| Gallus gallus similar to Hermansky-Pudlak syndrome 1 homolog;
            hermansky-Pudlak syndrome (LOC429879), mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  actactgctgctactacttcctct 255
            |||||||||||| |||||||||||
Sbjct: 1846 actactgctgctcctacttcctct 1869
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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
               hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     ttactactgctgctactact 249
               ||||||||||||||||||||
Sbjct: 1153280 ttactactgctgctactact 1153299
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     ttactactgctgctactact 249
               ||||||||||||||||||||
Sbjct: 1788629 ttactactgctgctactact 1788648
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>emb|AJ720774.1| Gallus gallus mRNA for hypothetical protein, clone 25f7
          Length = 2403

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  actactgctgctactacttcctct 255
            |||||||||||| |||||||||||
Sbjct: 1846 actactgctgctcctacttcctct 1869
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>gb|AC113613.4| Homo sapiens BAC clone RP11-511I21 from 4, complete sequence
          Length = 86568

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6871 ttactactgctgctactact 6890
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>gb|AC092709.2| Homo sapiens chromosome 8, clone RP11-509P12, complete sequence
          Length = 178904

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 230    ttactactgctgctactacttcctctac 257
              |||||||| || ||||||||||||||||
Sbjct: 118671 ttactactactactactacttcctctac 118644
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>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308
          Length = 51359

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   agttgtacagctgctggtgg 643
             ||||||||||||||||||||
Sbjct: 15060 agttgtacagctgctggtgg 15041
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 510     tctccatgatcttggcctcctcca 533
               |||||||| |||||||||||||||
Sbjct: 1020484 tctccatggtcttggcctcctcca 1020507
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>gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, complete sequence
          Length = 185315

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 230   ttactactgctgctactacttcctctac 257
             |||||||| || ||||||||||||||||
Sbjct: 25699 ttactactactactactacttcctctac 25672
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>gb|AF397467.1|AF397467 Ictalurus punctatus novel immune-type receptor 2 (NITR2) and novel
            immune-type receptor 4 (NITR4) genes, complete cds
          Length = 10115

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6765 ttactactgctgctactact 6746



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6708 ttactactgctgctactact 6689



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6558 ttactactgctgctactact 6539



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6501 ttactactgctgctactact 6482



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6444 ttactactgctgctactact 6425



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6411 ttactactgctgctactact 6392
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>gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123C21 map 15q21.3, complete
              sequence
          Length = 186846

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 111550 ttactactgctgctactact 111569
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>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23,
              complete sequence
          Length = 203127

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 111599 ttactactgctgctactact 111580
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>gb|AC157935.3| Mus musculus chromosome 5, clone RP24-228K8, complete sequence
          Length = 147812

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   tactactgctgctactactt 250
             ||||||||||||||||||||
Sbjct: 62721 tactactgctgctactactt 62740
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>gb|AC024246.8| Homo sapiens BAC clone RP11-643O14 from 2, complete sequence
          Length = 92320

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aaatggtacattacatccat 144
             ||||||||||||||||||||
Sbjct: 20223 aaatggtacattacatccat 20204
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>gb|AE009591.1| Brucella melitensis 16M chromosome I, section 148 of 195 of the
            complete sequence
          Length = 10362

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  cgggccttcgatggtgatcc 449
            ||||||||||||||||||||
Sbjct: 6109 cgggccttcgatggtgatcc 6090
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>gb|AF242862.1|AF242862S1 Homo sapiens coxsackie virus and adenovirus receptor (CXADR) gene,
            exon 1
          Length = 10651

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttactactgctgctactact 249
            ||||||||||||||||||||
Sbjct: 6939 ttactactgctgctactact 6920
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    cgggccttcgatggtgatcc 449
              ||||||||||||||||||||
Sbjct: 399502 cgggccttcgatggtgatcc 399521
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>dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, map 22, complete
              sequences
          Length = 225055

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 158927 ttactactgctgctactact 158908
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>gb|AF200465.1|AF200465 Homo sapiens coxsackievirus and adenovirus receptor (CXADR) gene,
             complete cds; and ANA gene, partial cds
          Length = 121798

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 33215 ttactactgctgctactact 33196
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>emb|CR925804.8| Zebrafish DNA sequence from clone CH211-151M7 in linkage group 14,
              complete sequence
          Length = 144393

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 118017 ttactactgctgctactact 117998
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>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence
          Length = 194339

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 127622 ttactactgctgctactact 127603
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    gatagcgataagcgattacc 368
              ||||||||||||||||||||
Sbjct: 426630 gatagcgataagcgattacc 426649
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>dbj|AP001670.1| Homo sapiens genomic DNA, chromosome 21q, section 14/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ttactactgctgctactact 249
              ||||||||||||||||||||
Sbjct: 145775 ttactactgctgctactact 145756
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    cgggccttcgatggtgatcc 449
              ||||||||||||||||||||
Sbjct: 395869 cgggccttcgatggtgatcc 395888
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>dbj|AP000963.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B827P19,
             LL56-APP region, complete sequence
          Length = 61926

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 54165 ttactactgctgctactact 54146
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>emb|AL663100.12| Human DNA sequence from clone RP5-1052J3 on chromosome 1, complete
             sequence
          Length = 80421

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ttactactgctgctactact 249
             ||||||||||||||||||||
Sbjct: 64681 ttactactgctgctactact 64662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,384,441
Number of Sequences: 3902068
Number of extensions: 4384441
Number of successful extensions: 82798
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82417
Number of HSP's gapped (non-prelim): 377
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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