ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29f03 |
|---|---|
| Clone Library Name | barley_pub |
>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor homolog) (ERR) (Ecotropic retrovirus receptor homolog) Length = 629 Score = 60.8 bits (146), Expect = 3e-09 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F PF+P+LP++ I +N YL++ L GTW+R VW+++G +Y YG HS Sbjct: 558 FKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWMLIGFIIYFGYGLWHS 608
>CTR1_MOUSE (Q09143) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor) (ERR) (Ecotropic retrovirus receptor) Length = 622 Score = 60.8 bits (146), Expect = 3e-09 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F PFVP+LPV+ I +N YL++ L GTW+R VW+++G +Y YG HS Sbjct: 551 FKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIGFTIYFGYGIWHS 601
>CTR2_MOUSE (P18581) Low-affinity cationic amino acid transporter 2 (CAT-2)| (CAT2) (TEA protein) (T-cell early activation protein) (20.5) Length = 657 Score = 60.5 bits (145), Expect = 4e-09 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F+ PF+P LP IL+N YL++ L TW+R +W+ +G +Y YG HS Sbjct: 555 FMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHS 605
>CTR2_HUMAN (P52569) Low-affinity cationic amino acid transporter 2 (CAT-2)| (CAT2) Length = 658 Score = 60.1 bits (144), Expect = 5e-09 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F+ PF+P LP IL+N YL++ L TW+R +W+ +G +Y YG HS Sbjct: 556 FMVPFLPFLPTFTILVNIYLMVQLSADTWVRFSIWMAIGFLIYFSYGIRHS 606
>CTR3_HUMAN (Q8WY07) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 619 Score = 59.3 bits (142), Expect = 8e-09 Identities = 24/51 (47%), Positives = 34/51 (66%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F P +PLLP+M I +N YL++ + GTW R GVW+++G +Y YG HS Sbjct: 539 FKVPALPLLPLMSIFVNIYLMMQMTAGTWARFGVWMLIGFAIYFGYGIQHS 589
>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 618 Score = 58.9 bits (141), Expect = 1e-08 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F P VPLLP++ I +N YL++ + GTW R G+W+++G +Y YG HS Sbjct: 538 FKVPAVPLLPLVSIFVNVYLMMQMTAGTWARFGIWMLIGFAIYFGYGIQHS 588
>CTR1_RAT (P30823) High-affinity cationic amino acid transporter 1 (CAT-1)| (CAT1) (System Y+ basic amino acid transporter) (Ecotropic retroviral leukemia receptor) (ERR) (Ecotropic retrovirus receptor) Length = 624 Score = 58.5 bits (140), Expect = 1e-08 Identities = 24/51 (47%), Positives = 34/51 (66%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F PFVP+LPV+ I +N YL++ L GTW+R VW+++ +Y YG HS Sbjct: 553 FKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIAFAIYFGYGVWHS 603
>CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 619 Score = 57.0 bits (136), Expect = 4e-08 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F P VPLLP++ I +N YL++ + TW R GVW+++G +Y YG HS Sbjct: 539 FKVPVVPLLPLVSIFVNVYLMMQMTADTWARFGVWMLIGFAIYFGYGIQHS 589
>CTR4_HUMAN (O43246) Cationic amino acid transporter 4 (CAT-4) (CAT4)| Length = 635 Score = 53.9 bits (128), Expect = 4e-07 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = -1 Query: 545 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVFVYIFYGRTHS 393 F P VPL+P + I++N L++ L TW+R +WL+MG+ VY YG HS Sbjct: 540 FQIPMVPLIPALSIVLNICLMLKLSYLTWVRFSIWLLMGLAVYFGYGIRHS 590
>ADCY1_MOUSE (O88444) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1118 Score = 31.6 bits (70), Expect = 1.9 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Frame = -3 Query: 582 RRWKALIWSFWRIHLPIRSTAA--GDVHSHKHILAHKSRGWHVDAGRGMAGNGGLRVHFL 409 R+W+ +WS + A G VH K LA + + V+ G G N LR H + Sbjct: 411 RKWQYDVWSNDVTLANVMEAAGLPGKVHITKTTLACLNGDYEVEPGHGHERNTFLRTHNI 470 Query: 408 RTDPQLADGRRVRLPGSGKRDIR----------VFVFIRVCGLEKLYMISSPF 280 T + RR PG DI+ ++ +++ K++ PF Sbjct: 471 ETFFIVPSHRRKIFPGLILSDIKPAKRMKFKTVCYLLVQLMHCRKMFKAEIPF 523
>STR_KLEPN (P13082) Streptomycin 3''-kinase (EC 2.7.1.87) (Streptomycin| 3''-phosphotransferase) (SPH) Length = 266 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = -3 Query: 516 GDVHSHKHILAHKSRGWHVDAGRGMAGNGGLRVHFLRTDPQLADGRRVRLPGSGKRDIRV 337 GD+H H+++L RGW G+ G + T+P L+D R G+ + R+ Sbjct: 153 GDLH-HENVLDFGDRGWLAIDPHGLLGERTFDYANIFTNPDLSDPGRPLAILPGRLEARL 211 Query: 336 FVFIRVCGLE 307 + + G E Sbjct: 212 SIVVATTGFE 221
>ADCY1_BOVIN (P19754) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1134 Score = 31.2 bits (69), Expect = 2.5 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Frame = -3 Query: 582 RRWKALIWSFWRIHLPIRSTAA--GDVHSHKHILAHKSRGWHVDAGRGMAGNGGLRVHFL 409 R+W+ +WS + A G VH K LA + + V+ G G N L+ H + Sbjct: 414 RKWQYDVWSNDVTLANVMEAAGLPGKVHITKTTLACLNGDYEVEPGHGHERNSFLKTHNI 473 Query: 408 RTDPQLADGRRVRLPGSGKRDIR----------VFVFIRVCGLEKLYMISSPF 280 T + RR PG DI+ ++ +++ K++ PF Sbjct: 474 ETFFIVPSHRRKIFPGLILSDIKPAKRMKFKTVCYLLVQLMHCRKMFKAEIPF 526
>VL1_HPV05 (P06917) Major capsid protein L1| Length = 516 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Frame = +1 Query: 82 FIHINYLQSSNEAHIYDDDDDISTNYNVHSFRICRILQTPCRG------LPCRMQQQQRG 243 F + ++SN + DD T+++ ++ + TPC G +PC QQ G Sbjct: 124 FNKVKDTENSNAYITFSKDDRQDTSFDPKQIQMFIVGCTPCIGEHWDKAVPCAENDQQTG 183 Query: 244 KIPPIRV 264 PPI + Sbjct: 184 LCPPIEL 190
>VL1_HPV5B (P26537) Major capsid protein L1| Length = 525 Score = 30.8 bits (68), Expect = 3.2 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = +1 Query: 127 YDDDDDISTNYNVHSFRICRILQTPCRG------LPCRMQQQQRGKIPPIRV 264 + DD ++T+++ ++ + TPC G +PC QQ G PPI + Sbjct: 148 FSKDDRLNTSFDPKQIQMFIVGCTPCIGEHWDKAVPCAKNDQQTGLCPPIEL 199
>ADCY1_HUMAN (Q08828) Adenylate cyclase type 1 (EC 4.6.1.1) (Adenylate cyclase| type I) (ATP pyrophosphate-lyase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1119 Score = 30.4 bits (67), Expect = 4.2 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Frame = -3 Query: 582 RRWKALIWSFWRIHLPIRSTAA--GDVHSHKHILAHKSRGWHVDAGRGMAGNGGLRVHFL 409 R+W+ +WS + A G VH K LA + + V+ G G N L+ H + Sbjct: 412 RKWQYDVWSNDVTLANVMEAAGLPGKVHITKTTLACLNGDYEVEPGYGHERNSFLKTHNI 471 Query: 408 RTDPQLADGRRVRLPGSGKRDIR----------VFVFIRVCGLEKLYMISSPF 280 T + RR PG DI+ ++ +++ K++ PF Sbjct: 472 ETFFIVPSHRRKIFPGLILSDIKPAKRMKFKTVCYLLVQLMHCRKMFKAEIPF 524
>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)| (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) Length = 981 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 486 QVCVYENAHHRQQWNEWADESSRMTK*VPSIVLVDPGEHT 605 QVC++ + HR +W DE PS +V G H+ Sbjct: 615 QVCLWNSMEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHS 654
>DNAJ2_MYCPA (Q73T77) Chaperone protein dnaJ 2| Length = 392 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 411 LRTDPQLADGRRVRLPGSGKRDIR 340 +R P + DG+R+RLPG G+ +R Sbjct: 244 VRIPPGVEDGQRIRLPGQGEAGLR 267
>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor| Length = 569 Score = 29.3 bits (64), Expect = 9.4 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 533 FVPLLPVMCILINTYLLINLGGGTWMRVGVWLVMGVF 423 F+PL+ +CI + N+G GT ++G WL++ F Sbjct: 245 FLPLVKSLCIACGS----NVGDGTERKLGAWLMLTCF 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,608,474 Number of Sequences: 219361 Number of extensions: 2062644 Number of successful extensions: 5528 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5525 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
