ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal28p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|D45075.1|PNI2OMTC Panicum miliaceum mRNA for 2-oxoglutarate/... 48 0.010
2dbj|D45074.1|PNI2OMTB Panicum miliaceum mRNA for 2-oxoglutarate/... 48 0.010
3dbj|D45073.1|PNI2OMTA Panicum miliaceum mRNA for 2-oxoglutarate/... 48 0.010
4gb|AC005075.2|AC005075 Homo sapiens BAC clone CTA-219E16 from 7,... 42 0.63
5gb|BT016874.1| Zea mays clone Contig707 mRNA sequence 40 2.5
6gb|BT016861.1| Zea mays clone Contig694 mRNA sequence 40 2.5
7gb|AY644469.1| Saccharum officinarum mitochondrial 2-oxoglutarat... 40 2.5
8gb|AY103946.1| Zea mays PCO074099 mRNA sequence 40 2.5
9gb|AE010338.1| Methanopyrus kandleri AV19 section 37 of 157 of t... 38 9.8
10gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
11ref|XM_751706.1| Ustilago maydis 521 hypothetical protein (UM006... 38 9.8
12emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chro... 38 9.8
13emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4,... 38 9.8
14emb|AL672225.15| Mouse DNA sequence from clone RP23-384G1 on chr... 38 9.8
15dbj|AK083869.1| Mus musculus 12 days embryo spinal ganglion cDNA... 38 9.8
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
18gb|AC104621.5| Homo sapiens BAC clone RP11-409K3 from 2, complet... 38 9.8
19dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.8
20dbj|AK058511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.8
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
22gb|AF010583.1|AF010583 Oryza sativa 2-oxoglutarate/malate transl... 38 9.8
23emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on ch... 38 9.8
24emb|AL929408.3| Mouse DNA sequence from clone RP23-456B2 on chro... 38 9.8

>dbj|D45075.1|PNI2OMTC Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator,
            complete cds
          Length = 2371

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 169  cttctcgaccttctggatctgattcaag 196
            |||||||| |||||||||||||||||||
Sbjct: 2049 cttctcgaacttctggatctgattcaag 2022



to top

>dbj|D45074.1|PNI2OMTB Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator,
            complete cds
          Length = 1783

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 169  cttctcgaccttctggatctgattcaag 196
            |||||||| |||||||||||||||||||
Sbjct: 1502 cttctcgaacttctggatctgattcaag 1475



to top

>dbj|D45073.1|PNI2OMTA Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator,
            complete cds
          Length = 1446

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 169  cttctcgaccttctggatctgattcaag 196
            |||||||| |||||||||||||||||||
Sbjct: 1029 cttctcgaacttctggatctgattcaag 1002



to top

>gb|AC005075.2|AC005075 Homo sapiens BAC clone CTA-219E16 from 7, complete sequence
          Length = 118334

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     tataggtacaaagaagctaca 113
              |||||||||||||||||||||
Sbjct: 118058 tataggtacaaagaagctaca 118078



to top

>gb|BT016874.1| Zea mays clone Contig707 mRNA sequence
          Length = 1051

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 169 cttctcgaccttctggatctgattcaag 196
           |||||| | |||||||||||||||||||
Sbjct: 364 cttctcaaacttctggatctgattcaag 391



to top

>gb|BT016861.1| Zea mays clone Contig694 mRNA sequence
          Length = 1412

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 169 cttctcgaccttctggatctgattcaag 196
           |||||| | |||||||||||||||||||
Sbjct: 368 cttctcaaacttctggatctgattcaag 395



to top

>gb|AY644469.1| Saccharum officinarum mitochondrial 2-oxoglutarate/malate
            translocator mRNA, complete cds; nuclear gene for
            mitochondrial product
          Length = 1416

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 169  cttctcgaccttctggatctgattcaag 196
            |||||| | |||||||||||||||||||
Sbjct: 1077 cttctcaatcttctggatctgattcaag 1050



to top

>gb|AY103946.1| Zea mays PCO074099 mRNA sequence
          Length = 1530

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 169  cttctcgaccttctggatctgattcaag 196
            |||||| | |||||||||||||||||||
Sbjct: 1075 cttctcaaacttctggatctgattcaag 1048



to top

>gb|AE010338.1| Methanopyrus kandleri AV19 section 37 of 157 of the complete genome
          Length = 13014

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 162  cgacacgcttctcgacctt 180
            |||||||||||||||||||
Sbjct: 7378 cgacacgcttctcgacctt 7396



to top

>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03
             map S20262S, complete sequence
          Length = 149553

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 166   acgcttctcgaccttctggatct 188
             ||||||||||| |||||||||||
Sbjct: 82633 acgcttctcgagcttctggatct 82611



to top

>ref|XM_751706.1| Ustilago maydis 521 hypothetical protein (UM00652.1) partial mRNA
          Length = 2400

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 158  aggccgacacgcttctcga 176
            |||||||||||||||||||
Sbjct: 1010 aggccgacacgcttctcga 1028



to top

>emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chromosome 6p12.3-21.1
             Contains the 3' end of a gene for a  novel protein similar
             to seven transmembrane receptor (Rhodopsin family),
             complete sequence
          Length = 131967

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    atttatataggtacaaaga 106
             |||||||||||||||||||
Sbjct: 88332 atttatataggtacaaaga 88314



to top

>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12,
            complete sequence
          Length = 138715

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 129  ggcaaggatagcatagcat 147
            |||||||||||||||||||
Sbjct: 5688 ggcaaggatagcatagcat 5706



to top

>emb|AL672225.15| Mouse DNA sequence from clone RP23-384G1 on chromosome 11 Contains the
             5' end of the Spnb2 gene for spectrin beta 2 and a CpG
             island, complete sequence
          Length = 172823

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    actgctgatttatataggt 99
             |||||||||||||||||||
Sbjct: 36263 actgctgatttatataggt 36245



to top

>dbj|AK083869.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130032O11
           product:unclassifiable, full insert sequence
          Length = 4614

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  actgctgatttatataggt 99
           |||||||||||||||||||
Sbjct: 353 actgctgatttatataggt 371



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 129     ggcaaggatagcatagcat 147
               |||||||||||||||||||
Sbjct: 9407567 ggcaaggatagcatagcat 9407585



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 166      acgcttctcgaccttctggatct 188
                ||||||||||| |||||||||||
Sbjct: 13366280 acgcttctcgagcttctggatct 13366258



to top

>gb|AC104621.5| Homo sapiens BAC clone RP11-409K3 from 2, complete sequence
          Length = 28670

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   tacactattacaatttgtc 128
             |||||||||||||||||||
Sbjct: 18003 tacactattacaatttgtc 18021



to top

>dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132N13, full
            insert sequence
          Length = 1354

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 166  acgcttctcgaccttctggatct 188
            ||||||||||| |||||||||||
Sbjct: 1075 acgcttctcgagcttctggatct 1053



to top

>dbj|AK058511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G08, full
           insert sequence
          Length = 1246

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 166 acgcttctcgaccttctggatct 188
           ||||||||||| |||||||||||
Sbjct: 958 acgcttctcgagcttctggatct 936



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 166      acgcttctcgaccttctggatct 188
                ||||||||||| |||||||||||
Sbjct: 13446459 acgcttctcgagcttctggatct 13446437



to top

>gb|AF010583.1|AF010583 Oryza sativa 2-oxoglutarate/malate translocator mRNA, partial cds
          Length = 949

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 154 ttaaaggccgacacgcttctcgaccttctggatct 188
           ||||||||| | || |||||||| |||||||||||
Sbjct: 657 ttaaaggcctaaacccttctcgagcttctggatct 623



to top

>emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on chromosome 4, complete
              sequence
          Length = 182520

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 141    atagcatggcactttaaag 159
              |||||||||||||||||||
Sbjct: 132944 atagcatggcactttaaag 132962



to top

>emb|AL929408.3| Mouse DNA sequence from clone RP23-456B2 on chromosome 4, complete
              sequence
          Length = 196915

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     gtacagattttgtctatca 74
              |||||||||||||||||||
Sbjct: 187977 gtacagattttgtctatca 187959


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,395,178
Number of Sequences: 3902068
Number of extensions: 1395178
Number of successful extensions: 93756
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93642
Number of HSP's gapped (non-prelim): 114
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top