>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1193

 Score =  146 bits (368), Expect = 6e-35
 Identities = 70/162 (43%), Positives = 102/162 (62%)
 Frame = -1

Query: 654  LTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRW 475
            +T V HYFD+         R  G   S YI D T     VRTL + + L+ R + LNP++
Sbjct: 1029 VTTVDHYFDTLGGIARAVKRARGEEASVYIGDQTRGGGTVRTLKDQIALETRARSLNPKY 1088

Query: 474  YEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPN 295
            YEG++K G EGVR+IE ++TNT+GWSAT+ QV+ WVY+  + TF+ DE MR+RL + NP 
Sbjct: 1089 YEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPE 1148

Query: 294  SFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 169
            +  ++ +  LEA+ R YW+   + L  L+    E+ED++EGI
Sbjct: 1149 ASVRMAERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190

>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1194

 Score =  144 bits (363), Expect = 2e-34
 Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
 Frame = -1

Query: 654  LTDVSHYFDS-----DPTKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKL 490
            +T V HYFD+       TK  QG    G+    YI D T     VRTL + + L+ R + 
Sbjct: 1029 VTTVDHYFDTLGGIARATKRAQG----GKETPVYIGDQTRGAGTVRTLQDQIALETRARS 1084

Query: 489  LNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLM 310
            LNP++YEG++K G EGVR+IE ++TNT+GWSAT+GQV+ WVY+  + TF+ D+EMR+RL 
Sbjct: 1085 LNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLA 1144

Query: 309  DTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 169
              N  +  ++ Q  LEA+ R YW+     L  L+    E+ED++EG+
Sbjct: 1145 SLNSAASSRMAQRLLEASDRNYWQPDPATLAALQAAADELEDRMEGV 1191

>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1279

 Score =  133 bits (334), Expect = 5e-31
 Identities = 57/164 (34%), Positives = 106/164 (64%), Gaps = 2/164 (1%)
 Frame = -1

Query: 654  LTDVSHYFDSDPTKLVQGLRKDGRAPSSYI--ADTTTANAQVRTLSETVRLDARTKLLNP 481
            ++D+ HYF S  +  +   R++ +     +   ++ T++ ++    +++R++ R+KLLNP
Sbjct: 1112 ISDIDHYFSSSGSLQLAARRRNTKTSDIKLNYVESFTSDIKLDEADKSLRVEYRSKLLNP 1171

Query: 480  RWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTN 301
            +W+EGM+K G+ G  EI  R+T  +GW A +  VD+WVY++   T+  D EMR+RL   N
Sbjct: 1172 KWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLN 1231

Query: 300  PNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 169
            P + + ++   LEA+GRG W+  +  +E L+E+Y+++ED++EG+
Sbjct: 1232 PQAIKNIVGRMLEAHGRGMWKADQSMIEELQEIYADLEDRLEGM 1275

>Y1441_METJA (Q58836) Hypothetical protein MJ1441|
          Length = 1226

 Score =  122 bits (306), Expect = 9e-28
 Identities = 58/139 (41%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
 Frame = -1

Query: 588  GRAPSSYIADTTTAN-AQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTN 412
            G    +Y  DT   N  +VRTL E +   + TKLLNP+W EGM + GY+G  +I KR+  
Sbjct: 1056 GEEVKAYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRIGR 1115

Query: 411  TVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETS 232
              GWSAT+ +V+NW+++E   TF+++EE RK   + N  +  ++ +  LEA  RG W+T+
Sbjct: 1116 VYGWSATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTT 1175

Query: 231  EDNLERLRELYSEVEDKIE 175
            E N+E L+  Y E+E  IE
Sbjct: 1176 EGNIEELKRAYLEIEGDIE 1194

>Y908_METJA (Q58318) Hypothetical protein MJ0908|
          Length = 1232

 Score =  108 bits (271), Expect = 1e-23
 Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
 Frame = -1

Query: 588  GRAPSSYIADTTTANAQVRT--LSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLT 415
            G+ P SY+ DT+  N  +RT  L E  +   RTK++NP+W EGM + GY+G  +  K + 
Sbjct: 1091 GKKPVSYVGDTSNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVD 1149

Query: 414  NTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWET 235
            +   W ATSG +D+W+YE+    ++ D++M +   + NP +   + +  LEA  RG W+ 
Sbjct: 1150 HMFAWDATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKA 1209

Query: 234  SEDNLERLRELYSEVEDKIE 175
             E+  E+LR+ Y E+E  IE
Sbjct: 1210 DEEMKEKLRKKYLEIEGMIE 1229

>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)|
            (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN
            subunit)
          Length = 1275

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
 Frame = -1

Query: 654  LTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTTANAQV-RTLSETVRLDARTKLLNPR 478
            L D   Y+  +        +  G  P+ Y  D +     V R+L E +    R +++NP+
Sbjct: 1111 LLDSDDYYQFEGGMSAAAEQLGGHRPAIYHNDHSRPEKPVIRSLEEEIGRVVRARVVNPK 1170

Query: 477  WYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNP 298
            W +G+M+ GY+G  EI   +     ++AT+G V +  +E A   FI DE +   + D NP
Sbjct: 1171 WIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRDHHFEAAYQAFIVDERVADFMRDKNP 1230

Query: 297  NSFRKLLQTFLEANGRGYW 241
             +F +L +  LEA  R  W
Sbjct: 1231 AAFAELAERLLEAIDRNLW 1249

>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -1

Query: 399 SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 220
           SA +   +N+ YEE  T   E  E+ +R +  + +   K + TFL+  GR      E   
Sbjct: 25  SAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKEMYTFLDKGGRSLTLRPEGTA 84

Query: 219 ERLR-----ELYSEVEDKIE 175
             +R     +LY EV   I+
Sbjct: 85  SVVRAFVEHKLYGEVSQPIK 104

>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4|
          Length = 980

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 456 SGYEGVREIEKRLTNTVGWSATSGQVDN---WVYEEA 355
           SG + + ++EK++ N V W  T  ++ N    VYEEA
Sbjct: 721 SGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEA 757

>UVRB_THET8 (Q56243) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 665

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
 Frame = -1

Query: 447 EGVREIEKRLTNTVGWSATSGQVDNWVY----EEANTTFIEDEEMRKRLMDT-------N 301
           EG    E+ L  T+G +A + + + W+Y     EA    IE+   R+ L +         
Sbjct: 520 EGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGIT 579

Query: 300 PNSFRKLLQTFLEANGRGYWE-------TSEDNLERLRELYSEVEDKIEGID 166
           P + RK ++  +     GY E       + ED  ER+ EL   +    E +D
Sbjct: 580 PETVRKEVRAVIRP--EGYEEAPLEADLSGEDLRERIAELELAMWQAAEALD 629

>PQQF_KLEPN (P27508) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)|
           (Pyrroloquinoline quinone biosynthesis protein F)
          Length = 761

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = +1

Query: 175 FDLVFNLRVELPEP-------FQVIL*--CLPVAS------AICF*EGLKQLPERIGISV 309
           FD  + L ++LPEP        Q IL    LPVAS      +I     + QLPER+G S 
Sbjct: 490 FDGSWQLTLQLPEPGRRPEAILQAILRQLALPVASLTPSPESIAIRHLMAQLPERLGTSG 549

Query: 310 HQ 315
           HQ
Sbjct: 550 HQ 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,658,146
Number of Sequences: 219361
Number of extensions: 1723589
Number of successful extensions: 5432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5430
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)