>HNF1A_CHICK (Q90867) Hepatocyte nuclear factor 1-alpha (HNF-1A) (HNF-1-alpha)|
          Length = 634

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSS 535
           P+PT+ P   P   + ++  P  SP    G R + +PA + ++SSS+
Sbjct: 292 PQPTSAPPLTPHNSSSLQPPPALSPTKVHGVRYNQQPASEAESSSSN 338

>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
 Frame = -3

Query: 690 KEXERPKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDAS----SSSPAKR 523
           +E   P+ T PP A   A+      P  S   GPG R  G P   L +S    SSS A  
Sbjct: 510 QENPSPQSTRPPLAPAGAKRAATHPPSDS---GPGGRGQGGPGTPLTSSAASASSSSASS 566

Query: 522 QANATNSVXXXXXXXXXXXXPRKTTGKLVFGSGGSQ 415
            +  T +                ++G  V   GG Q
Sbjct: 567 SSAPTPAGAASSAAGAASSSASASSGGAVGALGGRQ 602

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 660 PPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANATN 505
           PP+A  + + +  EEP+ +P  GPG      P++     S +PA+ +A  ++
Sbjct: 453 PPAAPRSIKVEAVEEPEAAPILGPGEPGPQAPSRTPSPRSPAPARVKAELSS 504

>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 551 MRHPLRLQSDKLMQPTVFSHQQPPPHRAPRLVKPREN 441
           +R P  LQ  + +QP +  +Q PPP   P L  PR +
Sbjct: 464 LRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAAPRHS 500

>PARP3_HUMAN (Q9Y6F1) Poly [ADP-ribose] polymerase 3 (EC 2.4.2.30) (PARP-3)|
           (NAD(+) ADP-ribosyltransferase 3) (Poly[ADP-ribose]
           synthetase 3) (pADPRT-3) (hPARP-3) (IRT1)
          Length = 533

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 509 PTVFSHQQPPPHRAPRLVKPRENLSLALAE 420
           P  F H QPPP  +P L++ ++++ L LA+
Sbjct: 262 PHNFGHSQPPPINSPELLQAKKDMLLVLAD 291

>CSK1_SCHPO (P36615) Serine/threonine-protein kinase csk1 (EC 2.7.11.22)|
           (CAK-activating kinase) (CAKAK)
          Length = 306

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 364 EERGAEIFSIHGKEVLLEGLNVQSMYLSLISTSYHKHHQGEEFSQLL 224
           E+ G     IH   +LL+ +N  + YLS  S ++ K H GEE  +L+
Sbjct: 121 EKHGILHRDIHPNNILLDSMNGPA-YLSDFSIAWSKQHPGEEVQELI 166

>TONB_NEIGO (O06432) Protein tonB|
          Length = 283

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 23/95 (24%), Positives = 37/95 (38%)
 Frame = -3

Query: 687 EXERPKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANAT 508
           + ++PK    P   P  E + E +P   P   P  +   KPA   + S ++ AK  +   
Sbjct: 95  DIQQPKEKPKPEEKPKPEPEPEAKPAPKPAEKPAEKPSEKPA---EHSGNASAKAGSEQG 151

Query: 507 NSVXXXXXXXXXXXXPRKTTGKLVFGSGGSQSSKG 403
           N                + +GK   GSGG++   G
Sbjct: 152 NGEGKGTGTKGDGTGRGEGSGK---GSGGAKGEHG 183

>OPGD_SHEON (Q8EI02) Probable glucans biosynthesis protein D precursor|
          Length = 540

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 184 WWSINASFLSTDPYVSHRGSV*LICKKYFNVWSWIFSEFLHILRLYALWXDFKGSFKA 11
           W    A  L+T+ YVSH+G +     K     SW   +  H  +  ALW +    F+A
Sbjct: 50  WLKGYAHTLATESYVSHKGEL----PKSLQGMSWDDYQQFHFKKKAALWREDDSEFRA 103

>PPIL3_NEUCR (Q6MWS8) Peptidyl-prolyl cis-trans isomerase-like 3 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 167

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 421 KPVIKRNRKGTRKGCKGGPEERGAEIFSIHGKEVLLEGLN 302
           +PV++ N +G       GP   G++ F +  K   L+GLN
Sbjct: 81  RPVLRHNERGIVSMANKGPNTNGSQFFILFDKAPHLDGLN 120

>ALGP_PSEAE (P15276) Transcriptional regulatory protein algP (Alginate|
           regulatory protein algR3)
          Length = 352

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -3

Query: 672 KPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANATNS 502
           KP A P+A PAA+    +     P T P  +    P+    ASS++ A   A +  +
Sbjct: 290 KPAAKPAAKPAAKPVAAKPAATKPATAPAAKPAATPSAPAAASSAASATPAAGSNGA 346

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSP 532
           P P  PPS  P ++    + P   P   PG  L   P  +L   SS+P
Sbjct: 626 PPPPLPPSQPPLSQGPATQAPSAQP--TPGEPLLAPPTTELKPESSNP 671

>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 707

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQV--EEEPKFSPFTGPGRRLDGKPAKDLDA---SSSSPAKRQAN 514
           P+PTAPP+A P   A V   E P  SP   P     G P     A   +S  PA+   N
Sbjct: 459 PQPTAPPTACPTWPATVRPSEHPTTSPTGAPSAGPTGPPTASPSAAPTASLDPAEDVCN 517

>APOA_MACMU (P14417) Apolipoprotein(a) (EC 3.4.21.-) (Apo(a)) (Lp(a)) (Fragment)|
          Length = 1420

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = +3

Query: 357  LSSGPPLH---PFRVPFLFLLMTGFRQSQRQVFPWFYEARCSVRWRLLMAEHCWLH*LVA 527
            LS  P  H   P R P   L     R    ++ PW Y    SVRW     E+C L     
Sbjct: 865  LSMTPHRHRRIPLRYPNAGLTRNYCRNRDAEIRPWCYTMDPSVRW-----EYCNLTQCPV 919

Query: 528  LQAKRMTHPDL*QACHPGAYQDQ*RG*T*VPPQLEPLQQD 647
             ++  +T P +       A  +Q       PP+  P+ QD
Sbjct: 920  TESSVLTTPTVVPVPSTEAPSEQ------APPEKSPVVQD 953

>DPOD1_BOVIN (P28339) DNA polymerase delta catalytic subunit (EC 2.7.7.7)|
          Length = 1106

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 663 APPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANATN 505
           APP+ DP  E  + ++ +   +  P R L G P    D   S P  R    TN
Sbjct: 82  APPALDPQMEPLIFQQLEIDHYVAPARPLPGAPPPSQD---SVPILRAFGVTN 131

>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD8) (CHD-8) (Helicase with
           SNF2 domain 1)
          Length = 2302

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 678 RPKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRL 577
           +P+P  PPS  P   + V++     P   PG+RL
Sbjct: 82  QPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRL 115

>Y195_VIBCH (Q9KVF1) Hypothetical protein VC0195|
          Length = 302

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 253 HQGEEFSQLLFSFLIPFGSWGIFWWSINASFL 158
           H   +F  LL + L+  G+W IF WSINA+ +
Sbjct: 72  HTPRKFWLLLVTALLVGGNWLIFIWSINANHM 103

>ACN1_CAEEL (Q18581) Inactive angiotensin-converting enzyme-related protein|
           precursor (ACE-like non-metallopeptidase protein 1)
          Length = 906

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANATNS 502
           P+P   P  +P  E + E EP  +P   P  + D   ++D    + + A  Q +  N+
Sbjct: 65  PEPEPKPEPEPEPEPKPEPEPSPTPEPEPAIKFDNIESEDYGDVAETAASTQPDELNT 122

>MUTS_TREPA (O83348) DNA mismatch repair protein mutS|
          Length = 900

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 566 LLKIWMRHPLRLQSD--KLMQPTVFSHQQP 483
           LL+ W+ HPLR Q +  K +   VF H +P
Sbjct: 308 LLRYWLHHPLRSQEEIQKRLSAVVFFHHRP 337

>HAP1_RAT (P54256) Huntingtin-associated protein 1 (HAP-1)|
          Length = 629

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 669 PTAPPSADPAAEAQVEEEPKFSPFTGPGRR 580
           PT  P+ADPA E   E +P  +  TG G++
Sbjct: 25  PTTQPAADPAPEPSAEPKPAPAQGTGSGQK 54

>CLFB_STAAU (O86476) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 913

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANA 511
           P P   P   P  E   + EP+ SP   P    D     D D+ S S ++  +++
Sbjct: 556 PSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDS 610

>CLFB_STAAN (Q7A382) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 877

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANA 511
           P P   P   P  E   + EP+ SP   P    D     D D+ S S ++  +++
Sbjct: 556 PSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDS 610

>CLFB_STAAM (Q99R07) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 877

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANA 511
           P P   P   P  E   + EP+ SP   P    D     D D+ S S ++  +++
Sbjct: 556 PSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDS 610

>CLFB_STAAC (Q5HCR7) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 913

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 675 PKPTAPPSADPAAEAQVEEEPKFSPFTGPGRRLDGKPAKDLDASSSSPAKRQANA 511
           P P   P   P  E   + EP+ SP   P    D     D D+ S S ++  +++
Sbjct: 556 PSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDS 610

>Y215_METTH (O26317) Hypothetical protein MTH215|
          Length = 204

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -2

Query: 286 LSLISTSYHKHHQGEEFSQLLFSFLIPFGSWGIFWWSI-------NASFLST 152
           ++ I  S  ++ +G  F        + FGS+G+FWWS+       N  FL T
Sbjct: 61  IAQILASVMEYRKGNTFGT------VAFGSYGLFWWSLVLLLVIPNLKFLET 106

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 25.4 bits (54), Expect(2) = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 681  ERPKPTAPPSADPAAEAQVEEEPK 610
            E+PK   PPSA P    + + +PK
Sbjct: 2437 EKPKQADPPSAQPNQTQEKQGQPK 2460



 Score = 22.3 bits (46), Expect(2) = 9.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 521  KLMQPTVFSHQQPPPHRAP 465
            KL QP   S  QPPP   P
Sbjct: 2480 KLPQPAAPSLPQPPPQAPP 2498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,178,607
Number of Sequences: 219361
Number of extensions: 1801049
Number of successful extensions: 6417
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6330
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)