ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29e01 |
|---|---|
| Clone Library Name | barley_pub |
>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;| Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3); Putative helicase (EC 3.6.1.-) (Putative NTP-binding protei Length = 3471 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 153 GVRCLHQKRMLGKSTLYRNYC 215 GVRC HQ + GK+ ++ NYC Sbjct: 24 GVRCAHQGWVSGKAVVFCNYC 44
>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;| Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3); Putative helicase (EC 3.6.1.-) (Putative NTP-binding protei Length = 3473 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 153 GVRCLHQKRMLGKSTLYRNYC 215 GVRC HQ + GK+ ++ NYC Sbjct: 24 GVRCAHQGWVSGKAVVFCNYC 44
>TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing protein 2 (Anti| Zuai-1) (AZU-1) Length = 1026 Score = 29.6 bits (65), Expect = 1.9 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Frame = +1 Query: 91 QTQPYDSKCLENAAAN-LRQPLEFDASTKNECW----ENPPSTEIIAFQRXKDKSSPDPS 255 + P DS E++ A L LEFD S W ENPP T+ I + P Sbjct: 322 EVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLRRPK 381 Query: 256 XGRTGEQTSLVRHHFFPSRHPPEPYFLP 339 +T E+ L P R P EP +P Sbjct: 382 MKKTPEK--LDNTPASPPRSPAEPNDIP 407
>CCG3_RAT (Q8VHX0) Voltage-dependent calcium channel gamma-3 subunit| (Neuronal voltage-gated calcium channel gamma-3 subunit) Length = 315 Score = 28.9 bits (63), Expect = 3.3 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Frame = +1 Query: 40 MYLRKIAQ*RFRAH-------TRTQTQPYDSKCLENAAANLRQPLEFDASTKNECWENPP 198 +Y+ K Q R R+H T + PY + +++ +P D S ++ + P Sbjct: 199 IYIEKHQQLRARSHSELLKKSTFARLPPYRYRFRRRSSSRSTEPRSRDLSPISKGFHTIP 258 Query: 199 STEIIAFQRXKDKSSPDPSXGRTGEQTSLVRHHFFPSRHPPEP 327 ST+I F S DPS G + R H F H P Sbjct: 259 STDISMF-----TLSRDPSKLTMGTLLNSDRDHAFLQFHNSTP 296
>CCG3_MOUSE (Q9JJV5) Voltage-dependent calcium channel gamma-3 subunit| (Neuronal voltage-gated calcium channel gamma-3 subunit) Length = 315 Score = 28.9 bits (63), Expect = 3.3 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Frame = +1 Query: 40 MYLRKIAQ*RFRAH-------TRTQTQPYDSKCLENAAANLRQPLEFDASTKNECWENPP 198 +Y+ K Q R R+H T + PY + +++ +P D S ++ + P Sbjct: 199 IYIEKHQQLRARSHSELLKKSTFARLPPYRYRFRRRSSSRSTEPRSRDLSPISKGFHTIP 258 Query: 199 STEIIAFQRXKDKSSPDPSXGRTGEQTSLVRHHFFPSRHPPEP 327 ST+I F S DPS G + R H F H P Sbjct: 259 STDISMF-----TLSRDPSKLTMGTLLNSDRDHAFLQFHNSTP 296
>HME2B_BRARE (P31533) Homeobox protein engrailed-2b (Zf-En-1) (Eng3)| Length = 261 Score = 28.5 bits (62), Expect = 4.3 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Frame = +1 Query: 73 RAHTRTQTQPYDSKCLENAAANLRQPLEFDASTKNECWENPPSTEIIAFQRXK---DKSS 243 RA T Q DS C + AA +QP+ + A + + PS+ + + K K Sbjct: 113 RAETGDQCLSSDSDCSQRCAAQAKQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKTPTKED 172 Query: 244 PDPSXGRTGEQTSLVRHHFFPSRHPPE 324 P T EQ +++ F +R+ E Sbjct: 173 KRPRTAFTAEQLQRLKNEFQNNRYLTE 199
>E41LA_MOUSE (P52963) Band 4.1-like protein 4A (NBL4 protein)| Length = 554 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = +1 Query: 91 QTQPYDSKCLENAAANLRQPLEFDASTKNECWENPPSTEIIA------FQRXKDKSSPDP 252 QTQP S + AN E EN +T+IIA F++ K+++SPDP Sbjct: 356 QTQPTGSNNINRITAN------------TENGENEGTTKIIAPSPVKSFKKAKNENSPDP 403 Query: 253 SXGRT 267 ++ Sbjct: 404 QRSKS 408
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/76 (23%), Positives = 32/76 (42%) Frame = +1 Query: 91 QTQPYDSKCLENAAANLRQPLEFDASTKNECWENPPSTEIIAFQRXKDKSSPDPSXGRTG 270 + + +DS L+ + QP ++D S + E PP +I + K+K +P+ G Sbjct: 2380 EDEDHDSLILQGDDRDCLQPEDYDTSLQEENDRTPPPDDIF-YDVMKEKENPEFPHGGMD 2438 Query: 271 EQTSLVRHHFFPSRHP 318 E + P P Sbjct: 2439 ESLGVENKVCCPQGFP 2454
>LEPA_AGRT5 (Q8UIQ2) GTP-binding protein lepA| Length = 608 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +2 Query: 128 LPPTYDNLWSSMPPPKTNVGKIHPLQKLL 214 +P + + + +PPPK++VG+ PL+ LL Sbjct: 178 IPDVLEAIVNRLPPPKSDVGENGPLKALL 206
>HDA2_YEAST (Q06629) HDA1 complex subunit 2 (Histone deacetylase complex 1| subunit 2) Length = 674 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 15 PNLVGFEDNVFKENCPVTIQGTYSNSNST 101 PNL + + K+ P ++ T SNSNST Sbjct: 181 PNLPTVDSTINKDGTPNSVSSTSSNSNST 209
>CCG3_MACFA (Q4R589) Voltage-dependent calcium channel gamma-3 subunit| (Neuronal voltage-gated calcium channel gamma-3 subunit) Length = 315 Score = 27.7 bits (60), Expect = 7.4 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Frame = +1 Query: 40 MYLRKIAQ*RFRAH-------TRTQTQPYDSKCLENAAANLRQPLEFDASTKNECWENPP 198 +Y+ K Q R ++H T + PY + +++ +P D S ++ + P Sbjct: 199 IYIEKHQQLRAKSHSEFLKKSTFARLPPYRYRFRRRSSSRSTEPRSRDLSPISKGFHTIP 258 Query: 199 STEIIAFQRXKDKSSPDPSXGRTGEQTSLVRHHFFPSRHPPEP 327 ST+I F S DPS G + R H F H P Sbjct: 259 STDISMF-----TLSRDPSKITMGTLLNSDRDHAFLQFHNSTP 296
>CCG3_HUMAN (O60359) Voltage-dependent calcium channel gamma-3 subunit| (Neuronal voltage-gated calcium channel gamma-3 subunit) Length = 315 Score = 27.7 bits (60), Expect = 7.4 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Frame = +1 Query: 40 MYLRKIAQ*RFRAH-------TRTQTQPYDSKCLENAAANLRQPLEFDASTKNECWENPP 198 +Y+ K Q R ++H T + PY + +++ +P D S ++ + P Sbjct: 199 IYIEKHQQLRAKSHSEFLKKSTFARLPPYRYRFRRRSSSRSTEPRSRDLSPISKGFHTIP 258 Query: 199 STEIIAFQRXKDKSSPDPSXGRTGEQTSLVRHHFFPSRHPPEP 327 ST+I F S DPS G + R H F H P Sbjct: 259 STDISMF-----TLSRDPSKITMGTLLNSDRDHAFLQFHNSTP 296
>LV4D_HUMAN (P01718) Ig lambda chain V-IV region Kern| Length = 106 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 219 EGNNFCRGWIFPTFVFGGGIELQRLS 142 E + FC+ W T +FGGG +L LS Sbjct: 81 EADYFCQTWDTITAIFGGGTKLTVLS 106
>TGFR2_RAT (P38438) TGF-beta receptor type-2 precursor (EC 2.7.11.30)| (TGF-beta receptor type II) (TGFR-2) (TGF-beta type II receptor) Length = 567 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Frame = +1 Query: 145 QPLEFDASTKNECWENPPSTEIIA---FQRXKDKSSPDPSXGRTGEQTSL 285 Q ++ T ECW++ P + A +R + PD GR+ Q + Sbjct: 508 QGIQIVCETLTECWDHDPEARLTAQCVAERFSELEHPDRLSGRSCSQEKI 557
>KV6A_MOUSE (P01675) Ig kappa chain V-VI region XRPC 44| Length = 107 Score = 27.3 bits (59), Expect = 9.6 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = -1 Query: 207 FCRGWIFPTFVFGGGIELQ 151 +C+ W +P + FGGG +L+ Sbjct: 86 YCQQWNYPLWTFGGGTKLE 104 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,189,325 Number of Sequences: 219361 Number of extensions: 1078933 Number of successful extensions: 3033 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3033 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
