ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.019
2ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.019
3ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.019
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
5dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
7dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
8dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
9dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
10dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 48 0.019
11emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp) 46 0.073
12emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp) 46 0.073
13emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier 46 0.073
14gb|BT016455.1| Zea mays clone Contig288 mRNA sequence 44 0.29
15emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide t... 44 0.29
16emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide tr... 44 0.29
17gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 42 1.1
18gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 42 1.1
19emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 1.1
20gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 m... 40 4.5
21gb|AC018559.31| Mus musculus strain 129/Sv chromosome 6 clone ct... 40 4.5
22gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Canc... 40 4.5
23dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 4.5

>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 87       aactcaaactcaaccctatgatagtaaa 114
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500



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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 87    aactcaaactcaaccctatgatagtaaa 114
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845



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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 87  aactcaaactcaaccctatgatagtaaa 114
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465



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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505



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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 87   aactcaaactcaaccctatgatagtaaa 114
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450



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>emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp)
          Length = 1494

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 316  ccgcctgagccgtacttcttgccgaag 342
            ||||| |||||||||||||||||||||
Sbjct: 1470 ccgccggagccgtacttcttgccgaag 1444



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>emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp)
          Length = 1549

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 316  ccgcctgagccgtacttcttgccgaag 342
            ||||| |||||||||||||||||||||
Sbjct: 1525 ccgccggagccgtacttcttgccgaag 1499



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>emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier
          Length = 1035

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 316  ccgcctgagccgtacttcttgccgaag 342
            ||||| |||||||||||||||||||||
Sbjct: 1025 ccgccggagccgtacttcttgccgaag 999



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>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence
          Length = 1550

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340
            ||||||||||||||||||| |  || | || ||| ||||| |||||||||||||| ||||
Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1225

              
Query: 341  ag 342
            ||
Sbjct: 1224 ag 1223



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>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP
            translocase)
          Length = 1511

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340
            ||||||||||||||||||| |  || | || ||| ||||| |||||||||||||| ||||
Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1210

              
Query: 341  ag 342
            ||
Sbjct: 1209 ag 1208



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>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator
          Length = 2098

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340
            ||||||||||||||||||| |  || | || ||| ||||| |||||||||||||| ||||
Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1878

              
Query: 341  ag 342
            ||
Sbjct: 1877 ag 1876



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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 273   acagacttctcttgttcgtcatcat 297
             ||||||||||||||||||| |||||
Sbjct: 10958 acagacttctcttgttcgttatcat 10982



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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 273   acagacttctcttgttcgtcatcat 297
             ||||||||||||||||||| |||||
Sbjct: 22002 acagacttctcttgttcgttatcat 21978



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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ctggagttcgatgcctccacc 171
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504



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>gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 map 6, complete sequence
          Length = 170323

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tatgatagtaaatgtttaga 122
             ||||||||||||||||||||
Sbjct: 46767 tatgatagtaaatgtttaga 46748



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>gb|AC018559.31| Mus musculus strain 129/Sv chromosome 6 clone ct7-596k8, complete
             sequence
          Length = 111775

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tatgatagtaaatgtttaga 122
             ||||||||||||||||||||
Sbjct: 52814 tatgatagtaaatgtttaga 52795



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>gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 210211

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    tatgatagtaaatgtttaga 122
              ||||||||||||||||||||
Sbjct: 201918 tatgatagtaaatgtttaga 201899



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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    catactcgaactcaaactcaaccc 102
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,691,113
Number of Sequences: 3902068
Number of extensions: 2691113
Number of successful extensions: 49055
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 48999
Number of HSP's gapped (non-prelim): 46
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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