| Clone Name | rbaal29e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1577 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1578 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1619 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full insert sequence Length = 1578 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full insert sequence Length = 1577 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full insert sequence Length = 1618 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator, complete cds Length = 1564 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 87 aactcaaactcaaccctatgatagtaaa 114 |||||||||||||||||||||| ||||| Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
>emb|X95864.1|TTANT2 T.turgidum ant gene (1494bp) Length = 1494 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 316 ccgcctgagccgtacttcttgccgaag 342 ||||| ||||||||||||||||||||| Sbjct: 1470 ccgccggagccgtacttcttgccgaag 1444
>emb|X95863.1|TTANT1 T.turgidum ant gene (1549bp) Length = 1549 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 316 ccgcctgagccgtacttcttgccgaag 342 ||||| ||||||||||||||||||||| Sbjct: 1525 ccgccggagccgtacttcttgccgaag 1499
>emb|X80023.1|TTADPATP T.turgidum mRNA for ADP/ATP carrier Length = 1035 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 316 ccgcctgagccgtacttcttgccgaag 342 ||||| ||||||||||||||||||||| Sbjct: 1025 ccgccggagccgtacttcttgccgaag 999
>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence Length = 1550 Score = 44.1 bits (22), Expect = 0.29 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 281 ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340 ||||||||||||||||||| | || | || ||| ||||| |||||||||||||| |||| Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1225 Query: 341 ag 342 || Sbjct: 1224 ag 1223
>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP translocase) Length = 1511 Score = 44.1 bits (22), Expect = 0.29 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 281 ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340 ||||||||||||||||||| | || | || ||| ||||| |||||||||||||| |||| Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1210 Query: 341 ag 342 || Sbjct: 1209 ag 1208
>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator Length = 2098 Score = 44.1 bits (22), Expect = 0.29 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 281 ctcttgttcgtcatcatttcttcccctctaggcacccgcctgagccgtacttcttgccga 340 ||||||||||||||||||| | || | || ||| ||||| |||||||||||||| |||| Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagca-ccgccggagccgtacttctttccga 1878 Query: 341 ag 342 || Sbjct: 1877 ag 1876
>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence Length = 138057 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 acagacttctcttgttcgtcatcat 297 ||||||||||||||||||| ||||| Sbjct: 10958 acagacttctcttgttcgttatcat 10982
>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence Length = 165247 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 acagacttctcttgttcgtcatcat 297 ||||||||||||||||||| ||||| Sbjct: 22002 acagacttctcttgttcgttatcat 21978
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12, ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene, tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19, ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An d48 Length = 82868 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 ctggagttcgatgcctccacc 171 ||||||||||||||||||||| Sbjct: 45484 ctggagttcgatgcctccacc 45504
>gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 map 6, complete sequence Length = 170323 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tatgatagtaaatgtttaga 122 |||||||||||||||||||| Sbjct: 46767 tatgatagtaaatgtttaga 46748
>gb|AC018559.31| Mus musculus strain 129/Sv chromosome 6 clone ct7-596k8, complete sequence Length = 111775 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tatgatagtaaatgtttaga 122 |||||||||||||||||||| Sbjct: 52814 tatgatagtaaatgtttaga 52795
>gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 210211 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tatgatagtaaatgtttaga 122 |||||||||||||||||||| Sbjct: 201918 tatgatagtaaatgtttaga 201899
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 catactcgaactcaaactcaaccc 102 ||||||| |||||||||||||||| Sbjct: 48909 catactcaaactcaaactcaaccc 48932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,691,113 Number of Sequences: 3902068 Number of extensions: 2691113 Number of successful extensions: 49055 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 48999 Number of HSP's gapped (non-prelim): 46 length of query: 342 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 320 effective length of database: 17,147,199,772 effective search space: 5487103927040 effective search space used: 5487103927040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)