ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal28o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ191684.1| Squilla empusa mitochondrion, complete genome 38 8.8
2emb|AL357515.26| Human DNA sequence from clone RP11-397G5 on chr... 38 8.8
3emb|AL672090.5| Mouse DNA sequence from clone RP23-322K21 on chr... 38 8.8
4gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl... 38 8.8
5emb|AL807401.11| Mouse DNA sequence from clone RP23-133C12 on ch... 38 8.8

>gb|DQ191684.1| Squilla empusa mitochondrion, complete genome
          Length = 15828

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    atgacaattcatacaagaa 44
             |||||||||||||||||||
Sbjct: 15516 atgacaattcatacaagaa 15534



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>emb|AL357515.26| Human DNA sequence from clone RP11-397G5 on chromosome 6 Contains the
             3' end of the AMD1 gene for S-adenosylmethionine
             decarboxylase 1, two novel genes, a glutathione
             S-transferase M2 (muscle) (GSTM2) pseudogene and three CpG
             islands, complete sequence
          Length = 190440

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tgacaattcatacaagaaa 45
             |||||||||||||||||||
Sbjct: 33024 tgacaattcatacaagaaa 33006



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>emb|AL672090.5| Mouse DNA sequence from clone RP23-322K21 on chromosome X, complete
             sequence
          Length = 211450

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tacctgattcaggatgcta 149
             |||||||||||||||||||
Sbjct: 12776 tacctgattcaggatgcta 12794



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>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    acatggctttgcctacctg 136
              |||||||||||||||||||
Sbjct: 153270 acatggctttgcctacctg 153252



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>emb|AL807401.11| Mouse DNA sequence from clone RP23-133C12 on chromosome X, complete
             sequence
          Length = 110261

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tacctgattcaggatgcta 149
             |||||||||||||||||||
Sbjct: 14873 tacctgattcaggatgcta 14891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 863,488
Number of Sequences: 3902068
Number of extensions: 863488
Number of successful extensions: 50410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50402
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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