>RNH1_CRIFA (Q07762) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 494

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 349 SSYVVYKGEVPEVYDDWEECRRQVHRFSGNSYK 251
           S YVV  G    +Y  W++C  QV  FSG  YK
Sbjct: 155 SFYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYK 187

>IBMP_CERV (P05401) Inclusion body matrix protein (Viroplasmin)|
          Length = 496

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 343 YVVYKGEVPEVYDDWEECRRQVHRFSGNSYK 251
           YVVY G    +YD W   ++  ++  G SYK
Sbjct: 135 YVVYNGPYAGIYDHWGTAKKATNKIPGVSYK 165

>YCF1_PINTH (P41647) Hypothetical 205.3 kDa protein ycf1 (ORF 1756)|
          Length = 1756

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 325 EVPEVYDDWEECRRQVH 275
           +VPE Y DWEE RR++H
Sbjct: 844 QVPEFYKDWEEMRREMH 860

>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 180 EEEPDEDQFHHDDAHRDRNPLLCDGSLDIEL*CEDKL 70
           E+E DE++  ++D H +    L DG LD++L  ED++
Sbjct: 496 EDEEDEEKIQNEDYHHE----LSDGDLDLDLVYEDEV 528

>RNH1_SCHPO (Q9UST8) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 264

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 343 YVVYKGEVPEVYDDWEECRRQVHRFSGNSYK 251
           Y V +G    +Y  W+E   QV  + GN YK
Sbjct: 9   YAVARGRNTGIYSTWDEASDQVKGYGGNRYK 39

>RNH1_HUMAN (O60930) Ribonuclease H1 (EC 3.1.26.4) (RNase H1) (Ribonuclease H|
           type II)
          Length = 286

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 343 YVVYKGEVPEVYDDWEECRRQVHRFSGNSYK 251
           Y V +G    V+  W ECR QV RF    +K
Sbjct: 29  YAVRRGRKTGVFLTWNECRAQVDRFPAARFK 59

>ABTAP_HUMAN (Q9H501) ABT1-associated protein|
          Length = 851

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 198 EREVGAEEEPDEDQFHHDDAHRDRNPLLCDGSLDIEL*CEDKLATRGL 55
           + E   +EE DED+   DD   D  P L  G  +IE   ED+  T  L
Sbjct: 275 DEEEDEDEEEDEDEDSEDDDKSDSGPDLARGKGNIETSSEDEDDTADL 322

>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 572 GPSTSKN--TNLDSHHDSTMNAEGAYCQEYQDHPEPGMHDQAGVDEDIMTSNV 420
           G  T K+  ++L+     T+   G++ Q+  DHP+P +      ++D +TS V
Sbjct: 773 GKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKV 825


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,858,255
Number of Sequences: 219361
Number of extensions: 1795071
Number of successful extensions: 4954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4940
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)