ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal29d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_453649.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D13156g ... 38 5.7
2gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Canc... 38 5.7
3emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 5.7
4gb|AC108748.7| Homo sapiens 3 BAC RP11-280H21 (Roswell Park Canc... 38 5.7

>ref|XM_453649.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D13156g predicted mRNA
          Length = 3288

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 18  atgatgttccttcataagc 36
           |||||||||||||||||||
Sbjct: 792 atgatgttccttcataagc 774



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>gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170269

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 99    actnaatttatttctcaaaagg 120
             ||| ||||||||||||||||||
Sbjct: 35724 actcaatttatttctcaaaagg 35703



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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1715506

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      atgatgttccttcataagc 36
               |||||||||||||||||||
Sbjct: 1127398 atgatgttccttcataagc 1127416



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>gb|AC108748.7| Homo sapiens 3 BAC RP11-280H21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 60995

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   tttatttctcaaaaggcag 123
             |||||||||||||||||||
Sbjct: 30983 tttatttctcaaaaggcag 30965


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 609,869
Number of Sequences: 3902068
Number of extensions: 609869
Number of successful extensions: 43757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43749
Number of HSP's gapped (non-prelim): 8
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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