ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29b08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK108690.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D03, full insert sequence Length = 1299 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Minus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 381 gatgcctgtccagaagaaagcctctccgacctcgccttgttagctctttccatgtaatct 322 Query: 306 tgatgagagtcatgctttgcccctcgggtcatgaggtaccagggaaccccgaaaatggcg 365 || || || | ||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 321 tggtgcgactgatgctttgcccctcgggtcatgaggtaccaggggacgccgaagatggcg 262 Query: 366 gcgaagatggcgatgcctgcgacgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 261 gcgaagatggcgatgccggcgacgacgtgcttcttctcgccgctgtacagg 211
>dbj|AK062903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F07, full insert sequence Length = 640 Score = 220 bits (111), Expect = 4e-54 Identities = 156/171 (91%) Strand = Plus / Minus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 346 gatgcctgtccagaagaaagcctctccgacctcgccttgttagctctttccatgtaatct 287 Query: 306 tgatgagagtcatgctttgcccctcgggtcatgaggtaccagggaaccccgaaaatggcg 365 || || || | ||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct: 286 tggtgcgactgatgctttgcccctcgggtcatgaggtaccaggggacgccgaagatggcg 227 Query: 366 gcgaagatggcgatgcctgcgacgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 226 gcgaagatggcgatgccggcgacgacgtgcttcttctcgccgctgtacagg 176
>dbj|AK111355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G12, full insert sequence Length = 521 Score = 198 bits (100), Expect = 1e-47 Identities = 154/172 (89%) Strand = Plus / Minus Query: 245 tgatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatc 304 ||||| ||||||||||||||| || ||||||||||||||||||||| |||| ||||| Sbjct: 228 tgatgactgtccagaagaaagtctctccgacctcgccttgttagctttttccatgtaatc 169 Query: 305 ttgatgagagtcatgctttgcccctcgggtcatgaggtaccagggaaccccgaaaatggc 364 ||| ||||| | |||||||| ||||||| |||||| |||||||||||| ||||| ||||| Sbjct: 168 ttggtgagattgatgctttgtccctcggctcatgaagtaccagggaacgccgaagatggc 109 Query: 365 ggcgaagatggcgatgcctgcgacgacgtgcttcttctctccgctgtacagg 416 |||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 108 ggcgaagatggcgatgccggcgacgacgtgcttcttctcgccgctgtacagg 57
>gb|AY111250.1| Zea mays CL14815_1 mRNA sequence Length = 431 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| || || |||||||||||||| |||| |||||| Sbjct: 159 gatgactgtccagaagaaagcctctctgatctcgccttgttagccttttccatgtaatct 218 Query: 306 tgatgagagtcatgctttgcccctcgggtcatgaggtaccagggaaccccgaaaatggcg 365 || ||||| | ||||||||||||||| ||||||| |||||| || || ||||| | ||| Sbjct: 219 tggtgagattgatgctttgcccctcgcgtcatgaagtaccatgggacgccgaagacggca 278 Query: 366 gcgaagatggcgatgcctgcgacgacgtgcttcttctctccgctgta 412 ||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 279 gcgaagatggcgatgccggcgacgacgtgcttcttctcgccactgta 325
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||| Sbjct: 22675296 cctcgggtcatgaggtaccaggggacgccgaagatggcggcgaagatggcgatgccggcg 22675237 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 22675236 acgacgtgcttcttctcgccgctgtacagg 22675207 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 22676431 gatgcctgtccagaagaaagcctctccgacctcgccttgttagctctttccatgtaatct 22676372 Query: 306 tgatgagagtcatgctttgcccct 329 || || || | ||||||||||||| Sbjct: 22676371 tggtgcgactgatgctttgcccct 22676348
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||| Sbjct: 22603487 cctcgggtcatgaggtaccaggggacgccgaagatggcggcgaagatggcgatgccggcg 22603428 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 22603427 acgacgtgcttcttctcgccgctgtacagg 22603398 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 22604622 gatgcctgtccagaagaaagcctctccgacctcgccttgttagctctttccatgtaatct 22604563 Query: 306 tgatgagagtcatgctttgcccct 329 || || || | ||||||||||||| Sbjct: 22604562 tggtgcgactgatgctttgcccct 22604539
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||| Sbjct: 120416 cctcgggtcatgaggtaccaggggacgccgaagatggcggcgaagatggcgatgccggcg 120357 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 120356 acgacgtgcttcttctcgccgctgtacagg 120327 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 246 gatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatct 305 |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct: 121551 gatgcctgtccagaagaaagcctctccgacctcgccttgttagctctttccatgtaatct 121492 Query: 306 tgatgagagtcatgctttgcccct 329 || || || | ||||||||||||| Sbjct: 121491 tggtgcgactgatgctttgcccct 121468
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 |||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct: 10440328 cctcggctcatgaagtaccagggaacgccgaagatggcggcgaagatggcgatgccggcg 10440387 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 10440388 acgacgtgcttcttctcgccgctgtacagg 10440417 Score = 73.8 bits (37), Expect = 5e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 245 tgatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatc 304 ||||| ||||||||||||||| || ||||||||||||||||||||| |||| ||||| Sbjct: 10438299 tgatgactgtccagaagaaagtctctccgacctcgccttgttagctttttccatgtaatc 10438358 Query: 305 ttgatgagagtcatgctttgcccct 329 ||| ||||| | |||||||| |||| Sbjct: 10438359 ttggtgagattgatgctttgtccct 10438383
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 |||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct: 141286 cctcggctcatgaagtaccagggaacgccgaagatggcggcgaagatggcgatgccggcg 141345 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 141346 acgacgtgcttcttctcgccgctgtacagg 141375 Score = 73.8 bits (37), Expect = 5e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 245 tgatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatc 304 ||||| ||||||||||||||| || ||||||||||||||||||||| |||| ||||| Sbjct: 139257 tgatgactgtccagaagaaagtctctccgacctcgccttgttagctttttccatgtaatc 139316 Query: 305 ttgatgagagtcatgctttgcccct 329 ||| ||||| | |||||||| |||| Sbjct: 139317 ttggtgagattgatgctttgtccct 139341
>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06 Length = 175416 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 327 cctcgggtcatgaggtaccagggaaccccgaaaatggcggcgaagatggcgatgcctgcg 386 |||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct: 62919 cctcggctcatgaagtaccagggaacgccgaagatggcggcgaagatggcgatgccggcg 62978 Query: 387 acgacgtgcttcttctctccgctgtacagg 416 ||||||||||||||||| |||||||||||| Sbjct: 62979 acgacgtgcttcttctcgccgctgtacagg 63008 Score = 73.8 bits (37), Expect = 5e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 245 tgatggctgtccagaagaaagcctatccgacctcgccttgttagctcgctccacataatc 304 ||||| ||||||||||||||| || ||||||||||||||||||||| |||| ||||| Sbjct: 60890 tgatgactgtccagaagaaagtctctccgacctcgccttgttagctttttccatgtaatc 60949 Query: 305 ttgatgagagtcatgctttgcccct 329 ||| ||||| | |||||||| |||| Sbjct: 60950 ttggtgagattgatgctttgtccct 60974
>gb|AC098973.2| Homo sapiens chromosome 3 clone RP11-286D1, complete sequence Length = 216172 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tggctgtccagaagaaagcct 268 ||||||||||||||||||||| Sbjct: 155910 tggctgtccagaagaaagcct 155930
>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete sequence Length = 177882 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 caagattaagccttcagattc 174 ||||||||||||||||||||| Sbjct: 139066 caagattaagccttcagattc 139046
>gb|AC116788.14| Mus musculus chromosome 8, clone RP24-296N13, complete sequence Length = 164158 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 tctactgttactgtattacaataa 94 |||||||||| ||||||||||||| Sbjct: 92781 tctactgttagtgtattacaataa 92804
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tctactgttactgtattaca 90 |||||||||||||||||||| Sbjct: 32087 tctactgttactgtattaca 32068
>gb|AC131335.11| Mus musculus chromosome 8, clone RP23-32D9, complete sequence Length = 190133 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gaacaaaatttctactgtta 80 |||||||||||||||||||| Sbjct: 44555 gaacaaaatttctactgtta 44574
>emb|AL445486.10| Human DNA sequence from clone RP11-139K1 on chromosome 10 Contains part of the TCF7L2 gene for transcription factor 7-like 2 (T-cell specific, HMG-box) and a ribosomal protein S15 (RPS15) pseudogene, complete sequence Length = 101839 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 caaaaaagactactatgaga 53 |||||||||||||||||||| Sbjct: 5018 caaaaaagactactatgaga 4999
>ref|XM_504385.1| Yarrowia lipolytica CLIB122, YALI0E25201g predicted mRNA Length = 4068 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 gaagatggcgatgcctgcgacgac 391 |||||||| ||||||||||||||| Sbjct: 759 gaagatggtgatgcctgcgacgac 736
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 gatgcctgcgacgacgtgct 396 |||||||||||||||||||| Sbjct: 160304 gatgcctgcgacgacgtgct 160285
>gb|AC096629.11| Bos taurus clone rp42-152a4, complete sequence Length = 191756 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 caggacgtgatctatcctgg 432 |||||||||||||||||||| Sbjct: 179457 caggacgtgatctatcctgg 179476
>gb|AC092858.21| Bos taurus clone rp42-147e22, complete sequence Length = 165590 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 caggacgtgatctatcctgg 432 |||||||||||||||||||| Sbjct: 22564 caggacgtgatctatcctgg 22583
>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183357 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ctccttcattctttcagtga 247 |||||||||||||||||||| Sbjct: 29094 ctccttcattctttcagtga 29113
>gb|BC109580.1| Bos taurus cDNA clone MGC:133945 IMAGE:8056717, complete cds Length = 1777 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cagctccttcattctttcag 244 |||||||||||||||||||| Sbjct: 613 cagctccttcattctttcag 594
>gb|AC182231.2| Mus musculus BAC clone RP23-356C18 from chromosome 8, complete sequence Length = 206310 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gaacaaaatttctactgtta 80 |||||||||||||||||||| Sbjct: 174196 gaacaaaatttctactgtta 174215
>gb|AC092874.2| Sus scrofa clone RP44-326F1, complete sequence Length = 164404 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctactgttactgtattacaa 91 |||||||||||||||||||| Sbjct: 50247 ctactgttactgtattacaa 50228
>dbj|AK109079.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-G11, full insert sequence Length = 1040 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 ccgaaaatggcggcgaagatggcg 377 |||| ||||||||||||||||||| Sbjct: 123 ccgataatggcggcgaagatggcg 100
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaaagactactatga 51 |||||||||||||||||||| Sbjct: 44379 agcaaaaaagactactatga 44360
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 gaagatggcgatgcctgcgacgac 391 |||||||| ||||||||||||||| Sbjct: 3019941 gaagatggtgatgcctgcgacgac 3019964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,873,100 Number of Sequences: 3902068 Number of extensions: 3873100 Number of successful extensions: 65316 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65155 Number of HSP's gapped (non-prelim): 160 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
