ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal29a19 |
|---|---|
| Clone Library Name | barley_pub |
>CRC_ARATH (Q8L925) Protein CRABS CLAW| Length = 181 Score = 33.5 bits (75), Expect = 0.48 Identities = 21/59 (35%), Positives = 23/59 (38%) Frame = +1 Query: 376 PLLQAPTSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLPKA 552 P LQ SLT F G + + S PSPS VVKP K LP A Sbjct: 63 PPLQGHVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSA 121
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = +1 Query: 388 APTSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLPKAPCKPL 567 A +S TS++H GV + RP R P + P++E V P P +SLP P PL Sbjct: 1973 ASSSSTSTRH-LQGVEFEM---RPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPL 2028 Query: 568 XP 573 P Sbjct: 2029 YP 2030
>JPH1_RABIT (Q9GKY8) Junctophilin-1 (Junctophilin type 1) (JP-1)| (Mitsugumin-72) (Mg72) Length = 662 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/56 (39%), Positives = 32/56 (57%) Frame = +1 Query: 400 LTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLPKAPCKPL 567 L S HG+ V H+ + P ++ S+PS S+ V KP+PNK S PK+ KP+ Sbjct: 547 LHSQYHGYY-VKLHAPQHPPVDAEDDDRSSPS-SSALVHKPSPNKWSPPKSVTKPV 600
>SETB1_MOUSE (O88974) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET) Length = 1307 Score = 30.8 bits (68), Expect = 3.1 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +1 Query: 388 APTSLTSSKHGFSGVLWHSSTYR-PQGSDRGPPSTPSPSNE*VVKPNPNKASLPKAPCKP 564 +PTS T S++ +G L + TYR P S P++ +P V P P P AP P Sbjct: 504 SPTSSTLSENVSAGKLGINQTYRSPLASVTSTPASAAPPVP-PVPPGPPTPPGPPAPPGP 562 Query: 565 LXP 573 L P Sbjct: 563 LAP 565
>TRPG_PENCH (P24773) Anthranilate synthase component 2 (EC 4.1.3.27)| (Anthranilate synthase component II) [Includes: Glutamine amidotransferase; Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3 Length = 752 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 571 VXEVYRVLLARMLYLDLA*RLIRCLDLECLEGLYHF 464 V E Y++L AR+ D +++ LD+E L LYH+ Sbjct: 366 VFEEYQILEARLAGADTVLLIVKMLDIELLTRLYHY 401
>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E1) (Cellulase E1) (Endocellulase E1) Length = 562 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Frame = +1 Query: 442 SSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLP-------KAPCKPLXPSRHPT 588 SS + P G+ P S PSPS P+P+ + P +P L P+ PT Sbjct: 393 SSIFDPVGASASPSSQPSPSVSPSPSPSPSASRTPTPTPTPTASPTPTLTPTATPT 448
>SLIK3_MOUSE (Q810B9) SLIT and NTRK-like protein 3 precursor| Length = 980 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +1 Query: 391 PTSLTSSKH-GFSGVLWHSSTYRPQGSDRGPPSTP-SPSNE*VVKPNPNKASLPKAPCKP 564 P+S+ SS H S V + SS +P+ + + P TP PS + P PN+ + +P Sbjct: 311 PSSMLSSVHFTASSVEYKSSNKQPKPTKQ--PRTPRPPSTSQALYPGPNQPPIAPYQTRP 368 Query: 565 LXPSRHPTG 591 P PTG Sbjct: 369 PIPIICPTG 377
>SLIK3_HUMAN (O94933) SLIT and NTRK-like protein 3 precursor| Length = 977 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +1 Query: 391 PTSLTSSKH-GFSGVLWHSSTYRPQGSDRGPPSTP-SPSNE*VVKPNPNKASLPKAPCKP 564 P+S+ SS H S V + SS +P+ + + P TP PS + P PN+ + +P Sbjct: 310 PSSMLSSVHFTASSVEYKSSNKQPKPTKQ--PRTPRPPSTSQALYPGPNQPPIAPYQTRP 367 Query: 565 LXPSRHPTG 591 P PTG Sbjct: 368 PIPIICPTG 376
>FTSK_HAEIN (P45264) DNA translocase ftsK| Length = 529 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +1 Query: 418 GFSGVLWHSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNK 534 G+SG L H + ++ Q + R PSTP PS + ++K PN+ Sbjct: 16 GYSGSLIHPA-FQQQTTKREKPSTPLPSLDLLLKYPPNE 53
>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major| surface antigen) Length = 1162 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Frame = +1 Query: 346 TTRNTDAIRAPLLQAPTSLTSSKHGFSGVLWHSSTYRP-QGSDRGPPSTPSPSNE*VVKP 522 T ++ A P A +S S+ + HS+ P S G PSTP+ S+ Sbjct: 722 TPADSSAHSTPSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHGTPSTPADSSAHSTPS 781 Query: 523 NPNKASLPKAPCKPLXPSRHPTGS 594 P +S P P+ S H T S Sbjct: 782 TPADSSAHGTPSTPVDSSAHSTPS 805 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Frame = +1 Query: 394 TSLTSSKHGFSGVLWHSSTYRP-----QGSDRGPPSTPSPSNE*VVKPNPNKASLPKAPC 558 T + SS HG SS + S G PSTP+ S+ P +S P Sbjct: 686 TPVDSSAHGAPSTPADSSAHGTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPS 745 Query: 559 KPLXPSRHPTGS 594 P S H T S Sbjct: 746 TPADSSAHSTPS 757
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/67 (35%), Positives = 29/67 (43%) Frame = +1 Query: 376 PLLQAPTSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLPKAP 555 P QAP+SL S G S V P S P S+P P + + + ASLP P Sbjct: 841 PCPQAPSSLLPSSSGASQV--------PFPSPSLPTSSPLPFSPSYPQVPLHPASLPTCP 892 Query: 556 CKPLXPS 576 P PS Sbjct: 893 SPPPLPS 899
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 478 PPSTPSPSNE*VVKPNPNKASLPKAPCKPLXPSRHPTGS 594 PPS P+P + + P+P + SLP P PS P+ S Sbjct: 139 PPSPPTPRSSTPI-PHPPRRSLPSPPSPSPSPSPSPSPS 176
>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)| Length = 641 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +1 Query: 439 HSSTYRPQGSDRGPPSTPSPSNE*VVKPNPNKASLPKAPCKPLXPSRHPTG 591 HS + S + P +P+++ P P L P PL P PTG Sbjct: 379 HSDSTAAASSQQQAPPQSAPASQIQAPPMPGPPPLGPPPAPPLRPPGPPTG 429
>TEGP_EHV1V (Q6S6V5) Probable tegument phosphoprotein| Length = 219 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 394 TSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSP 498 T +S++G G +TY P G+ G PS PSP Sbjct: 67 TYTAASENGDPGFTLGDNTYGPNGAASGCPSPPSP 101
>TEGP_EHV1K (P32513) Probable tegument phosphoprotein| Length = 219 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 394 TSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSP 498 T +S++G G +TY P G+ G PS PSP Sbjct: 67 TYTAASENGDPGFTLGDNTYGPNGAASGCPSPPSP 101
>TEGP_EHV1B (P28930) Probable tegument phosphoprotein| Length = 219 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 394 TSLTSSKHGFSGVLWHSSTYRPQGSDRGPPSTPSP 498 T +S++G G +TY P G+ G PS PSP Sbjct: 67 TYTAASENGDPGFTLGDNTYGPNGAASGCPSPPSP 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,253,408 Number of Sequences: 219361 Number of extensions: 1541977 Number of successful extensions: 4948 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4911 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
